Wall clock time and date at job start Mon Mar 30 2020 07:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99607 * 2 1 4 4 H 1.48506 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 300.00076 * 3 2 1 6 6 H 1.48506 * 109.47035 * 60.00491 * 3 2 1 7 7 C 1.37871 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47646 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47600 * 180.02562 * 10 9 7 12 12 C 1.52990 * 109.47353 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47398 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99488 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00290 * 180.02562 * 13 12 11 16 16 C 1.46498 * 119.99828 * 180.27728 * 15 13 12 17 17 H 1.08999 * 110.05292 * 325.41873 * 16 15 13 18 18 C 1.54381 * 110.07258 * 86.90924 * 16 15 13 19 19 C 1.55019 * 104.18265 * 142.76238 * 18 16 15 20 20 C 1.54996 * 102.84801 * 322.33360 * 19 18 16 21 21 C 1.53476 * 110.06834 * 203.93490 * 16 15 13 22 22 C 1.52579 * 121.05690 * 96.54160 * 21 16 15 23 23 C 1.52561 * 121.08634 * 24.83031 * 21 16 15 24 24 H 0.96996 * 120.00393 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 26 26 H 1.09005 * 109.46634 * 299.99918 * 9 7 2 27 27 H 1.08999 * 109.46950 * 59.99410 * 10 9 7 28 28 H 1.09003 * 109.46788 * 300.00484 * 10 9 7 29 29 H 1.08998 * 109.47142 * 59.99377 * 11 10 9 30 30 H 1.09011 * 109.46657 * 299.99934 * 11 10 9 31 31 H 1.08998 * 109.47508 * 59.99597 * 12 11 10 32 32 H 1.09002 * 109.47337 * 299.99883 * 12 11 10 33 33 H 0.97001 * 119.99727 * 359.97438 * 15 13 12 34 34 H 1.09000 * 110.48357 * 261.48017 * 18 16 15 35 35 H 1.08994 * 110.48464 * 24.11305 * 18 16 15 36 36 H 1.08994 * 110.75288 * 203.98550 * 19 18 16 37 37 H 1.08996 * 110.85813 * 80.73545 * 19 18 16 38 38 H 1.08992 * 110.51049 * 278.89974 * 20 19 18 39 39 H 1.08994 * 110.62269 * 156.24039 * 20 19 18 40 40 H 1.09001 * 117.50123 * 356.97479 * 22 21 16 41 41 H 1.08996 * 117.51459 * 142.06364 * 22 21 16 42 42 H 1.08995 * 117.50634 * 217.88681 * 23 21 16 43 43 H 1.08992 * 117.50467 * 2.93304 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4746 -6.1499 -0.0005 13 6 1.7212 -7.4551 -0.0005 14 8 0.5084 -7.4551 -0.0005 15 7 2.3951 -8.6223 0.0005 16 6 1.6626 -9.8910 -0.0056 17 1 0.7428 -9.7943 0.5711 18 6 1.3372 -10.3079 -1.4560 19 6 1.4991 -11.8496 -1.4535 20 6 2.7170 -12.0668 -0.5198 21 6 2.5375 -11.0070 0.5814 22 6 2.4138 -11.4161 2.0461 23 6 3.6694 -10.6913 1.5543 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8898 27 1 2.8720 -3.6043 0.8894 28 1 2.8720 -3.6043 -0.8905 29 1 0.8540 -5.0446 -0.8913 30 1 0.8534 -5.0451 0.8887 31 1 3.1007 -6.0923 0.8898 32 1 3.1019 -6.0922 -0.8901 33 1 3.3651 -8.6222 0.0009 34 1 0.3144 -10.0314 -1.7120 35 1 2.0419 -9.8518 -2.1512 36 1 1.7118 -12.2173 -2.4572 37 1 0.6103 -12.3325 -1.0472 38 1 3.6480 -11.9005 -1.0616 39 1 2.6989 -13.0691 -0.0919 40 1 1.7188 -10.8529 2.6690 41 1 2.5043 -12.4763 2.2822 42 1 4.5858 -11.2749 1.4670 43 1 3.8007 -9.6515 1.8534 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601703874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:48 Heat of formation + Delta-G solvation = -50.991010 kcal Electronic energy + Delta-G solvation = -19612.819396 eV Core-core repulsion = 16657.049154 eV Total energy + Delta-G solvation = -2955.770243 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.39127 -38.70154 -34.95099 -34.56352 -33.67213 -32.57131 -29.88301 -27.95612 -26.06292 -25.08003 -22.94631 -22.33253 -21.12426 -20.09805 -19.94844 -19.25065 -16.90033 -16.38658 -16.09375 -15.70690 -15.49118 -15.23066 -14.47585 -14.22154 -14.04527 -13.48130 -13.12967 -12.93215 -12.62062 -12.34334 -11.95116 -11.86945 -11.65275 -11.56464 -11.38113 -11.25480 -10.97923 -10.93809 -10.62651 -10.50689 -10.46496 -10.38299 -10.24183 -9.70386 -9.58583 -9.18846 -9.07700 -8.94308 -8.28933 -5.93483 -3.95896 2.77476 3.03188 3.34338 3.41405 3.45440 3.53291 4.00648 4.27003 4.46623 4.50525 4.56566 4.85839 4.89991 4.94858 5.23649 5.29436 5.30069 5.33658 5.37068 5.41020 5.42729 5.49377 5.55823 5.60831 5.68489 5.78037 5.81188 5.89113 5.93854 6.03640 6.17423 6.34121 6.45214 6.58948 6.87404 7.05533 7.23051 7.51603 7.76655 7.92724 8.08315 8.33161 8.50160 9.12146 9.67736 11.17936 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.045326 B = 0.002739 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.595354 B =10219.231915 C =10451.800604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.139 4.139 13 C 0.511 3.489 14 O -0.536 6.536 15 N -0.732 5.732 16 C 0.175 3.825 17 H 0.091 0.909 18 C -0.133 4.133 19 C -0.121 4.121 20 C -0.086 4.086 21 C -0.143 4.143 22 C -0.161 4.161 23 C -0.168 4.168 24 H 0.259 0.741 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.399 0.601 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.033 -26.760 0.111 27.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.179 4.179 13 C 0.299 3.701 14 O -0.411 6.411 15 N -0.385 5.385 16 C 0.071 3.929 17 H 0.109 0.891 18 C -0.171 4.171 19 C -0.159 4.159 20 C -0.124 4.124 21 C -0.144 4.144 22 C -0.198 4.198 23 C -0.205 4.205 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.234 0.766 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.987 -26.620 0.114 27.522 hybrid contribution 0.932 0.945 0.039 1.328 sum 7.919 -25.675 0.153 26.869 Atomic orbital electron populations 1.69985 1.06047 1.26379 1.51087 1.25045 0.94840 0.99238 0.95501 0.86559 0.80079 0.83945 0.77538 1.19784 1.21051 1.21060 1.21326 0.93015 0.91206 1.50188 0.92715 1.19102 0.94075 0.91291 0.97309 1.21648 0.99064 0.94037 1.00033 1.21442 0.97018 0.92710 1.02920 1.21794 1.00083 0.92132 1.03884 1.21118 0.88496 0.85629 0.74862 1.90700 1.14241 1.87661 1.48536 1.46241 1.10130 1.05328 1.76755 1.20973 0.94556 0.81342 0.96065 0.89144 1.22790 1.02528 0.95514 0.96300 1.22455 0.98104 0.95882 0.99483 1.21864 0.98669 0.96982 0.94883 1.22018 1.02043 0.98759 0.91551 1.22981 1.00655 1.01020 0.95173 1.22916 0.92847 1.01857 1.02860 0.93110 0.96584 0.96604 0.93511 0.93507 0.91827 0.91859 0.89269 0.89213 0.76649 0.90842 0.91024 0.91237 0.91189 0.91078 0.91451 0.88583 0.88523 0.88505 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.79 13.29 55.43 0.74 -27.06 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 11 C -0.10 -1.88 4.50 -26.74 -0.12 -2.00 16 12 C -0.14 -1.89 5.70 -27.89 -0.16 -2.05 16 13 C 0.51 7.26 7.82 -10.98 -0.09 7.17 16 14 O -0.54 -9.91 15.65 5.55 0.09 -9.82 16 15 N -0.73 -7.63 4.58 -52.86 -0.24 -7.87 16 16 C 0.18 1.77 3.08 -66.96 -0.21 1.56 16 17 H 0.09 1.12 7.59 -51.93 -0.39 0.73 16 18 C -0.13 -1.25 6.55 -24.94 -0.16 -1.41 16 19 C -0.12 -0.86 6.91 -24.61 -0.17 -1.04 16 20 C -0.09 -0.56 6.58 -25.22 -0.17 -0.73 16 21 C -0.14 -1.10 2.31 -154.25 -0.36 -1.45 16 22 C -0.16 -1.17 10.23 -26.90 -0.28 -1.45 16 23 C -0.17 -1.14 9.48 -26.91 -0.26 -1.40 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.06 1.24 8.10 -51.92 -0.42 0.82 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.40 3.16 7.66 -40.82 -0.31 2.85 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.39 8.11 -51.93 -0.42 -0.04 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.10 0.70 7.37 -51.93 -0.38 0.32 16 LS Contribution 349.11 15.07 5.26 5.26 Total: -1.00 -33.36 349.11 -9.63 -42.99 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -7.81 Total: -1.76 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -2.64 Total: -18.79 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.49 Total: -34.93 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.36 -9.63 -42.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601703874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.004 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds