Wall clock time and date at job start Mon Mar 30 2020 07:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99607 * 2 1 4 4 H 1.48506 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 300.00076 * 3 2 1 6 6 H 1.48506 * 109.47035 * 60.00491 * 3 2 1 7 7 C 1.37871 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47646 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47600 * 180.02562 * 10 9 7 12 12 C 1.52990 * 109.47353 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47398 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99488 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00290 * 180.02562 * 13 12 11 16 16 C 1.46498 * 119.99828 * 180.27728 * 15 13 12 17 17 H 1.08999 * 110.05292 * 325.41873 * 16 15 13 18 18 C 1.54381 * 110.07258 * 86.90924 * 16 15 13 19 19 C 1.55019 * 104.18265 * 142.76238 * 18 16 15 20 20 C 1.54996 * 102.84801 * 322.33360 * 19 18 16 21 21 C 1.53476 * 110.06834 * 203.93490 * 16 15 13 22 22 C 1.52579 * 121.05690 * 96.54160 * 21 16 15 23 23 C 1.52561 * 121.08634 * 24.83031 * 21 16 15 24 24 H 0.96996 * 120.00393 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 26 26 H 1.09005 * 109.46634 * 299.99918 * 9 7 2 27 27 H 1.08999 * 109.46950 * 59.99410 * 10 9 7 28 28 H 1.09003 * 109.46788 * 300.00484 * 10 9 7 29 29 H 1.08998 * 109.47142 * 59.99377 * 11 10 9 30 30 H 1.09011 * 109.46657 * 299.99934 * 11 10 9 31 31 H 1.08998 * 109.47508 * 59.99597 * 12 11 10 32 32 H 1.09002 * 109.47337 * 299.99883 * 12 11 10 33 33 H 0.97001 * 119.99727 * 359.97438 * 15 13 12 34 34 H 1.09000 * 110.48357 * 261.48017 * 18 16 15 35 35 H 1.08994 * 110.48464 * 24.11305 * 18 16 15 36 36 H 1.08994 * 110.75288 * 203.98550 * 19 18 16 37 37 H 1.08996 * 110.85813 * 80.73545 * 19 18 16 38 38 H 1.08992 * 110.51049 * 278.89974 * 20 19 18 39 39 H 1.08994 * 110.62269 * 156.24039 * 20 19 18 40 40 H 1.09001 * 117.50123 * 356.97479 * 22 21 16 41 41 H 1.08996 * 117.51459 * 142.06364 * 22 21 16 42 42 H 1.08995 * 117.50634 * 217.88681 * 23 21 16 43 43 H 1.08992 * 117.50467 * 2.93304 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4746 -6.1499 -0.0005 13 6 1.7212 -7.4551 -0.0005 14 8 0.5084 -7.4551 -0.0005 15 7 2.3951 -8.6223 0.0005 16 6 1.6626 -9.8910 -0.0056 17 1 0.7428 -9.7943 0.5711 18 6 1.3372 -10.3079 -1.4560 19 6 1.4991 -11.8496 -1.4535 20 6 2.7170 -12.0668 -0.5198 21 6 2.5375 -11.0070 0.5814 22 6 2.4138 -11.4161 2.0461 23 6 3.6694 -10.6913 1.5543 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8898 27 1 2.8720 -3.6043 0.8894 28 1 2.8720 -3.6043 -0.8905 29 1 0.8540 -5.0446 -0.8913 30 1 0.8534 -5.0451 0.8887 31 1 3.1007 -6.0923 0.8898 32 1 3.1019 -6.0922 -0.8901 33 1 3.3651 -8.6222 0.0009 34 1 0.3144 -10.0314 -1.7120 35 1 2.0419 -9.8518 -2.1512 36 1 1.7118 -12.2173 -2.4572 37 1 0.6103 -12.3325 -1.0472 38 1 3.6480 -11.9005 -1.0616 39 1 2.6989 -13.0691 -0.0919 40 1 1.7188 -10.8529 2.6690 41 1 2.5043 -12.4763 2.2822 42 1 4.5858 -11.2749 1.4670 43 1 3.8007 -9.6515 1.8534 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601703874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:47 Heat of formation + Delta-G solvation = -70.576267 kcal Electronic energy + Delta-G solvation = -19613.668677 eV Core-core repulsion = 16657.049154 eV Total energy + Delta-G solvation = -2956.619523 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.29007 -39.63937 -36.65278 -35.37181 -34.66490 -34.47493 -31.56441 -28.93740 -27.37415 -26.24792 -24.12538 -23.42644 -22.01712 -21.64871 -21.10142 -19.97900 -18.42793 -17.93241 -17.17730 -16.86706 -16.50214 -16.23837 -15.98862 -15.43815 -15.21114 -14.54984 -14.40289 -13.96841 -13.71237 -13.59471 -13.52859 -13.30966 -12.88154 -12.77664 -12.40284 -12.31170 -12.15915 -12.14630 -12.00843 -11.91912 -11.65174 -11.38827 -11.36440 -11.18694 -11.16253 -10.90757 -10.59331 -10.56271 -10.03370 -8.19188 -6.31508 1.40158 1.41293 1.54794 1.65218 2.14684 2.41775 2.88237 3.13556 3.37009 3.63920 3.85116 3.87391 3.98757 4.06351 4.14103 4.24821 4.27226 4.46159 4.64187 4.66512 4.68670 4.74617 4.78029 4.83496 4.86728 4.89844 5.00456 5.04440 5.07768 5.16513 5.18456 5.24994 5.27282 5.32899 5.36322 5.39951 5.54528 5.58575 5.77443 5.87625 6.24854 6.58232 6.87248 7.29484 7.38277 8.93420 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.045326 B = 0.002739 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.595354 B =10219.231915 C =10451.800604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.018 3.982 10 C -0.095 4.095 11 C -0.096 4.096 12 C -0.128 4.128 13 C 0.510 3.490 14 O -0.589 6.589 15 N -0.711 5.711 16 C 0.171 3.829 17 H 0.059 0.941 18 C -0.134 4.134 19 C -0.117 4.117 20 C -0.080 4.080 21 C -0.146 4.146 22 C -0.167 4.167 23 C -0.158 4.158 24 H 0.263 0.737 25 H -0.016 1.016 26 H -0.016 1.016 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.415 0.585 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.409 -27.799 0.041 30.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.795 3.205 4 H -0.180 1.180 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.019 4.019 10 C -0.133 4.133 11 C -0.134 4.134 12 C -0.168 4.168 13 C 0.298 3.702 14 O -0.469 6.469 15 N -0.363 5.363 16 C 0.066 3.934 17 H 0.077 0.923 18 C -0.172 4.172 19 C -0.155 4.155 20 C -0.117 4.117 21 C -0.147 4.147 22 C -0.204 4.204 23 C -0.195 4.195 24 H 0.072 0.928 25 H 0.002 0.998 26 H 0.002 0.998 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.253 0.747 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.419 -27.699 0.045 29.594 hybrid contribution -0.188 1.244 0.074 1.260 sum 10.232 -26.455 0.118 28.365 Atomic orbital electron populations 1.70141 1.08106 1.27711 1.51980 1.26108 0.95792 1.03802 0.94786 0.85319 0.79200 0.78333 0.77696 1.18036 1.20439 1.20458 1.21785 0.93760 0.92194 1.50107 0.91537 1.19062 0.94699 0.93856 0.94270 1.21446 0.97802 0.92687 1.01339 1.21238 0.97499 0.93730 1.00917 1.21674 0.98920 0.89531 1.06637 1.21233 0.87814 0.86795 0.74330 1.90691 1.16531 1.88372 1.51328 1.46057 1.10902 1.04537 1.74848 1.21014 0.94102 0.81870 0.96424 0.92267 1.22756 1.01151 0.97629 0.95695 1.22448 0.98683 0.93700 1.00625 1.21863 0.98545 0.97160 0.94132 1.21957 1.02378 0.98209 0.92141 1.23043 1.00869 1.01911 0.94555 1.23004 0.93144 1.01950 1.01362 0.92843 0.99752 0.99781 0.92041 0.92030 0.93963 0.94018 0.86412 0.86364 0.74696 0.93166 0.90833 0.89879 0.91332 0.89954 0.90042 0.90069 0.86920 0.86557 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.72 13.29 21.44 0.28 -59.43 16 2 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 3 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.54 -31.70 9.11 25.60 0.23 -31.47 16 8 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 9 C 0.02 1.02 4.97 29.85 0.15 1.17 16 10 C -0.10 -3.96 5.15 30.59 0.16 -3.80 16 11 C -0.10 -3.56 4.50 30.59 0.14 -3.42 16 12 C -0.13 -3.26 5.70 29.85 0.17 -3.09 16 13 C 0.51 14.36 7.82 87.66 0.69 15.04 16 14 O -0.59 -22.84 15.65 -3.04 -0.05 -22.89 16 15 N -0.71 -14.03 4.58 -439.55 -2.01 -16.04 16 16 C 0.17 3.40 3.08 45.62 0.14 3.54 16 17 H 0.06 1.57 7.59 -2.39 -0.02 1.55 16 18 C -0.13 -2.50 6.55 31.75 0.21 -2.29 16 19 C -0.12 -1.49 6.91 31.97 0.22 -1.27 16 20 C -0.08 -0.82 6.58 31.57 0.21 -0.61 16 21 C -0.15 -1.97 2.31 -52.01 -0.12 -2.09 16 22 C -0.17 -2.15 10.23 30.48 0.31 -1.84 16 23 C -0.16 -1.72 9.48 30.48 0.29 -1.43 16 24 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 25 H -0.02 -0.98 8.14 -2.39 -0.02 -0.99 16 26 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 27 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 30 H 0.04 1.70 8.10 -2.38 -0.02 1.68 16 31 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.42 5.49 7.66 -92.71 -0.71 4.78 16 34 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.33 8.05 -2.39 -0.02 1.31 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.08 0.65 8.11 -2.39 -0.02 0.63 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.12 0.86 8.14 -2.39 -0.02 0.85 16 43 H 0.09 1.11 7.37 -2.39 -0.02 1.09 16 Total: -1.00 -75.49 349.11 3.76 -71.73 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.25 Total: 11.00 kcal Atomic # 6 Polarization: -34.81 SS G_CDS: 3.25 Total: -31.56 kcal Atomic # 7 Polarization: -73.75 SS G_CDS: -1.73 Total: -75.48 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.05 Total: -22.89 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -75.49 3.76 -71.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601703874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.152 kcal (2) G-P(sol) polarization free energy of solvation -75.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds