Wall clock time and date at job start Mon Mar 30 2020 08:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.90303 * 2 1 4 4 H 1.07996 * 120.00348 * 239.05154 * 3 2 1 5 5 C 1.37885 * 120.00054 * 59.05652 * 3 2 1 6 6 N 1.31518 * 119.99810 * 359.97438 * 5 3 2 7 7 Si 1.86790 * 119.99962 * 179.97438 * 5 3 2 8 8 H 1.48500 * 109.47327 * 359.97438 * 7 5 3 9 9 H 1.48506 * 109.47264 * 119.99708 * 7 5 3 10 10 H 1.48501 * 109.47253 * 239.99884 * 7 5 3 11 11 C 1.54459 * 109.83513 * 239.05484 * 2 1 3 12 12 C 1.55487 * 102.34312 * 261.85296 * 11 2 1 13 13 C 1.53983 * 100.81577 * 326.88832 * 12 11 2 14 14 C 1.54078 * 110.28776 * 274.30382 * 13 12 11 15 15 C 1.55430 * 104.56776 * 242.11479 * 14 13 12 16 16 N 1.47146 * 103.55365 * 23.87840 * 15 14 13 17 17 C 1.45626 * 116.60142 * 197.97814 * 16 15 14 18 18 C 1.53637 * 107.78706 * 182.95688 * 17 16 15 19 19 C 1.52822 * 110.70885 * 302.57602 * 18 17 16 20 20 C 1.53664 * 110.59326 * 53.75971 * 19 18 17 21 21 C 1.48916 * 103.87737 * 318.31145 * 16 15 14 22 22 H 1.09005 * 110.06217 * 285.81865 * 21 16 15 23 23 O 1.42492 * 106.45824 * 35.15240 * 13 12 11 24 24 H 1.09004 * 109.46857 * 180.94510 * 1 2 3 25 25 H 1.08998 * 109.47573 * 300.94703 * 1 2 3 26 26 H 1.09005 * 109.47070 * 60.94679 * 1 2 3 27 27 H 0.96998 * 119.99681 * 180.02562 * 6 5 3 28 28 H 1.09002 * 110.83175 * 143.64465 * 11 2 1 29 29 H 1.08994 * 110.83110 * 20.06930 * 11 2 1 30 30 H 1.09003 * 111.14653 * 84.78025 * 12 11 2 31 31 H 1.09000 * 111.15041 * 208.99684 * 12 11 2 32 32 H 1.09002 * 110.42094 * 0.88911 * 14 13 12 33 33 H 1.09007 * 110.41845 * 123.34444 * 14 13 12 34 34 H 1.08999 * 110.60967 * 265.35425 * 15 14 13 35 35 H 1.09004 * 110.73825 * 142.45680 * 15 14 13 36 36 H 1.08995 * 109.80244 * 302.53329 * 17 16 15 37 37 H 1.09009 * 109.79709 * 63.38862 * 17 16 15 38 38 H 1.08998 * 109.22904 * 62.89560 * 18 17 16 39 39 H 1.09004 * 109.23033 * 182.30464 * 18 17 16 40 40 H 1.09002 * 109.25279 * 174.04127 * 19 18 17 41 41 H 1.09001 * 109.25664 * 293.50928 * 19 18 17 42 42 H 1.09002 * 109.83075 * 184.30954 * 20 19 18 43 43 H 1.09000 * 109.82965 * 63.37084 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0430 1.4170 0.0000 4 1 2.6791 1.7610 -0.8021 5 6 1.7004 2.2743 1.0242 6 7 0.9254 1.8555 2.0008 7 14 2.3369 4.0304 1.0245 8 1 3.1832 4.2504 -0.1757 9 1 1.1894 4.9728 1.0012 10 1 3.1445 4.2640 2.2486 11 6 2.0541 -0.7471 -1.2461 12 6 2.3693 -2.1599 -0.6785 13 6 2.8135 -1.8039 0.7523 14 6 4.3137 -1.4534 0.7744 15 6 4.9524 -2.5269 1.6993 16 7 4.0048 -3.6504 1.6292 17 6 4.0993 -4.6499 2.6841 18 6 3.0795 -5.7566 2.3747 19 6 1.6695 -5.1772 2.2661 20 6 1.6359 -4.0237 1.2514 21 6 2.6689 -2.9952 1.6891 22 1 2.4666 -2.6506 2.7033 23 8 2.0169 -0.6942 1.1579 24 1 -0.3633 -1.0276 0.0170 25 1 -0.3634 0.5284 0.8813 26 1 -0.3633 0.4991 -0.8984 27 1 0.6841 2.4587 2.7210 28 1 2.9574 -0.2735 -1.6307 29 1 1.2855 -0.8018 -2.0171 30 1 1.4783 -2.7877 -0.6690 31 1 3.1773 -2.6357 -1.2342 32 1 4.7340 -1.5175 -0.2293 33 1 4.4652 -0.4563 1.1880 34 1 5.0317 -2.1550 2.7208 35 1 5.9311 -2.8265 1.3243 36 1 5.1048 -5.0700 2.7057 37 1 3.8682 -4.1937 3.6467 38 1 3.3444 -6.2356 1.4321 39 1 3.1015 -6.4985 3.1730 40 1 0.9832 -5.9600 1.9430 41 1 1.3573 -4.8058 3.2421 42 1 0.6447 -3.5704 1.2396 43 1 1.8841 -4.3976 0.2581 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686231716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:07:47 Heat of formation + Delta-G solvation = -42.696427 kcal Electronic energy + Delta-G solvation = -22234.767113 eV Core-core repulsion = 19279.356551 eV Total energy + Delta-G solvation = -2955.410563 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.20714 -37.64691 -34.39370 -32.91373 -31.46652 -30.93225 -29.03739 -28.37288 -25.48644 -25.15171 -22.86784 -22.38766 -21.32786 -20.16560 -19.08683 -18.56235 -16.41186 -15.79068 -14.86541 -14.70748 -14.62310 -14.49374 -14.17789 -13.46030 -13.30320 -13.03863 -12.72405 -12.31186 -12.12539 -11.87973 -11.74653 -11.45106 -11.14387 -10.95571 -10.87954 -10.85680 -10.61870 -10.58285 -10.45510 -10.34884 -10.18621 -10.04493 -9.88438 -9.60145 -9.25588 -9.01390 -8.44280 -8.10458 -7.78863 -5.91172 -4.07046 3.30406 3.39038 3.42284 4.21429 4.44940 4.86494 4.90517 5.06687 5.10317 5.38391 5.39870 5.47115 5.59439 5.61417 5.66513 5.71207 5.80525 5.86394 5.91114 5.96760 6.06478 6.12183 6.19283 6.25418 6.36802 6.39737 6.41934 6.51517 6.64569 6.65468 6.72273 6.79192 6.85419 6.98290 7.01489 7.13773 7.25317 7.52202 7.53516 7.83596 8.15776 8.42711 8.72468 9.12535 9.64021 11.10368 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.027872 B = 0.006448 C = 0.006117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.348649 B = 4341.540736 C = 4575.961541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.230 3.770 3 C -0.529 4.529 4 H 0.058 0.942 5 C 0.080 3.920 6 N -0.861 5.861 7 Si 0.885 3.115 8 H -0.273 1.273 9 H -0.284 1.284 10 H -0.284 1.284 11 C -0.142 4.142 12 C -0.139 4.139 13 C 0.114 3.886 14 C -0.130 4.130 15 C 0.045 3.955 16 N -0.525 5.525 17 C 0.055 3.945 18 C -0.111 4.111 19 C -0.120 4.120 20 C -0.101 4.101 21 C 0.075 3.925 22 H 0.055 0.945 23 O -0.339 6.339 24 H 0.011 0.989 25 H 0.089 0.911 26 H 0.034 0.966 27 H 0.257 0.743 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.036 0.964 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.030 0.970 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.698 -12.219 -0.545 12.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.193 3.807 3 C -0.567 4.567 4 H 0.076 0.924 5 C -0.124 4.124 6 N -0.498 5.498 7 Si 0.712 3.288 8 H -0.198 1.198 9 H -0.210 1.210 10 H -0.210 1.210 11 C -0.180 4.180 12 C -0.176 4.176 13 C 0.072 3.928 14 C -0.169 4.169 15 C -0.083 4.083 16 N -0.251 5.251 17 C -0.074 4.074 18 C -0.149 4.149 19 C -0.158 4.158 20 C -0.139 4.139 21 C -0.033 4.033 22 H 0.073 0.927 23 O -0.258 6.258 24 H 0.030 0.970 25 H 0.108 0.892 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.049 0.951 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.667 -12.391 -0.615 12.937 hybrid contribution 0.420 1.374 0.717 1.606 sum 4.087 -11.018 0.103 11.752 Atomic orbital electron populations 1.21975 0.97543 0.97595 1.02538 1.19691 0.90795 0.90284 0.79959 1.21302 1.32053 0.94814 1.08501 0.92415 1.24994 0.94253 0.97951 0.95235 1.69968 1.34438 1.34857 1.10496 0.86679 0.78824 0.85284 0.77981 1.19781 1.21011 1.21038 1.23270 1.00601 0.94471 0.99654 1.23151 1.00709 0.97707 0.96060 1.21599 0.91139 0.87602 0.92437 1.22964 0.96044 0.98702 0.99145 1.22850 0.95894 0.90961 0.98614 1.63843 1.03627 1.12798 1.44783 1.21990 0.99176 0.93620 0.92580 1.21561 0.94688 0.97039 1.01631 1.21609 0.96450 0.98102 0.99639 1.21499 0.98482 0.94822 0.99085 1.22171 0.89101 0.92844 0.99155 0.92705 1.88633 1.66150 1.38727 1.32305 0.96996 0.89226 0.94680 0.93251 0.91956 0.92431 0.91311 0.91635 0.91542 0.89915 0.94548 0.91002 0.91246 0.95137 0.91443 0.92209 0.92175 0.92537 0.91285 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.51 37.16 0.32 -3.08 16 2 C 0.23 5.71 0.83 -91.01 -0.08 5.63 16 3 C -0.53 -14.45 8.23 -34.44 -0.28 -14.74 16 4 H 0.06 1.57 7.52 -52.49 -0.39 1.17 16 5 C 0.08 2.23 5.26 -17.82 -0.09 2.13 16 6 N -0.86 -24.71 10.92 55.43 0.61 -24.11 16 7 Si 0.88 21.23 29.54 -169.99 -5.02 16.21 16 8 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 C -0.14 -2.98 5.95 -24.64 -0.15 -3.13 16 12 C -0.14 -2.58 5.26 -24.90 -0.13 -2.71 16 13 C 0.11 2.31 1.06 -89.93 -0.10 2.21 16 14 C -0.13 -2.47 6.35 -24.88 -0.16 -2.63 16 15 C 0.04 0.72 6.74 -2.40 -0.02 0.71 16 16 N -0.52 -8.31 4.83 -224.80 -1.09 -9.39 16 17 C 0.05 0.74 5.88 -4.18 -0.02 0.71 16 18 C -0.11 -1.32 6.05 -26.49 -0.16 -1.48 16 19 C -0.12 -1.55 5.95 -26.48 -0.16 -1.70 16 20 C -0.10 -1.57 4.32 -26.80 -0.12 -1.68 16 21 C 0.08 1.35 2.15 -67.39 -0.15 1.20 16 22 H 0.05 1.11 7.96 -51.93 -0.41 0.70 16 23 O -0.34 -8.59 9.60 -35.23 -0.34 -8.93 16 24 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.09 2.44 6.01 -51.93 -0.31 2.12 16 26 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.06 1.31 7.66 -51.93 -0.40 0.91 16 29 H 0.06 1.12 7.82 -51.93 -0.41 0.72 16 30 H 0.07 1.22 6.03 -51.93 -0.31 0.91 16 31 H 0.06 1.12 7.71 -51.93 -0.40 0.72 16 32 H 0.07 1.18 7.47 -51.93 -0.39 0.80 16 33 H 0.08 1.77 8.02 -51.93 -0.42 1.35 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.03 0.43 7.98 -51.92 -0.41 0.01 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.13 8.09 -51.93 -0.42 0.71 16 43 H 0.07 1.11 6.86 -51.93 -0.36 0.75 16 LS Contribution 319.46 15.07 4.81 4.81 Total: -1.00 -28.83 319.46 -9.88 -38.71 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.57 Total: 1.25 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -1.29 Total: -18.55 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: -0.48 Total: -33.50 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.34 Total: -8.93 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.83 -9.88 -38.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686231716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.987 kcal (2) G-P(sol) polarization free energy of solvation -28.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds