Wall clock time and date at job start Mon Mar 30 2020 08:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.90303 * 2 1 4 4 H 1.07996 * 120.00348 * 239.05154 * 3 2 1 5 5 C 1.37885 * 120.00054 * 59.05652 * 3 2 1 6 6 N 1.31518 * 119.99810 * 359.97438 * 5 3 2 7 7 Si 1.86790 * 119.99962 * 179.97438 * 5 3 2 8 8 H 1.48500 * 109.47327 * 359.97438 * 7 5 3 9 9 H 1.48506 * 109.47264 * 119.99708 * 7 5 3 10 10 H 1.48501 * 109.47253 * 239.99884 * 7 5 3 11 11 C 1.54459 * 109.83513 * 239.05484 * 2 1 3 12 12 C 1.55487 * 102.34312 * 261.85296 * 11 2 1 13 13 C 1.53983 * 100.81577 * 326.88832 * 12 11 2 14 14 C 1.54078 * 110.28776 * 274.30382 * 13 12 11 15 15 C 1.55430 * 104.56776 * 242.11479 * 14 13 12 16 16 N 1.47146 * 103.55365 * 23.87840 * 15 14 13 17 17 C 1.45626 * 116.60142 * 197.97814 * 16 15 14 18 18 C 1.53637 * 107.78706 * 182.95688 * 17 16 15 19 19 C 1.52822 * 110.70885 * 302.57602 * 18 17 16 20 20 C 1.53664 * 110.59326 * 53.75971 * 19 18 17 21 21 C 1.48916 * 103.87737 * 318.31145 * 16 15 14 22 22 H 1.09005 * 110.06217 * 285.81865 * 21 16 15 23 23 O 1.42492 * 106.45824 * 35.15240 * 13 12 11 24 24 H 1.09004 * 109.46857 * 180.94510 * 1 2 3 25 25 H 1.08998 * 109.47573 * 300.94703 * 1 2 3 26 26 H 1.09005 * 109.47070 * 60.94679 * 1 2 3 27 27 H 0.96998 * 119.99681 * 180.02562 * 6 5 3 28 28 H 1.09002 * 110.83175 * 143.64465 * 11 2 1 29 29 H 1.08994 * 110.83110 * 20.06930 * 11 2 1 30 30 H 1.09003 * 111.14653 * 84.78025 * 12 11 2 31 31 H 1.09000 * 111.15041 * 208.99684 * 12 11 2 32 32 H 1.09002 * 110.42094 * 0.88911 * 14 13 12 33 33 H 1.09007 * 110.41845 * 123.34444 * 14 13 12 34 34 H 1.08999 * 110.60967 * 265.35425 * 15 14 13 35 35 H 1.09004 * 110.73825 * 142.45680 * 15 14 13 36 36 H 1.08995 * 109.80244 * 302.53329 * 17 16 15 37 37 H 1.09009 * 109.79709 * 63.38862 * 17 16 15 38 38 H 1.08998 * 109.22904 * 62.89560 * 18 17 16 39 39 H 1.09004 * 109.23033 * 182.30464 * 18 17 16 40 40 H 1.09002 * 109.25279 * 174.04127 * 19 18 17 41 41 H 1.09001 * 109.25664 * 293.50928 * 19 18 17 42 42 H 1.09002 * 109.83075 * 184.30954 * 20 19 18 43 43 H 1.09000 * 109.82965 * 63.37084 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0430 1.4170 0.0000 4 1 2.6791 1.7610 -0.8021 5 6 1.7004 2.2743 1.0242 6 7 0.9254 1.8555 2.0008 7 14 2.3369 4.0304 1.0245 8 1 3.1832 4.2504 -0.1757 9 1 1.1894 4.9728 1.0012 10 1 3.1445 4.2640 2.2486 11 6 2.0541 -0.7471 -1.2461 12 6 2.3693 -2.1599 -0.6785 13 6 2.8135 -1.8039 0.7523 14 6 4.3137 -1.4534 0.7744 15 6 4.9524 -2.5269 1.6993 16 7 4.0048 -3.6504 1.6292 17 6 4.0993 -4.6499 2.6841 18 6 3.0795 -5.7566 2.3747 19 6 1.6695 -5.1772 2.2661 20 6 1.6359 -4.0237 1.2514 21 6 2.6689 -2.9952 1.6891 22 1 2.4666 -2.6506 2.7033 23 8 2.0169 -0.6942 1.1579 24 1 -0.3633 -1.0276 0.0170 25 1 -0.3634 0.5284 0.8813 26 1 -0.3633 0.4991 -0.8984 27 1 0.6841 2.4587 2.7210 28 1 2.9574 -0.2735 -1.6307 29 1 1.2855 -0.8018 -2.0171 30 1 1.4783 -2.7877 -0.6690 31 1 3.1773 -2.6357 -1.2342 32 1 4.7340 -1.5175 -0.2293 33 1 4.4652 -0.4563 1.1880 34 1 5.0317 -2.1550 2.7208 35 1 5.9311 -2.8265 1.3243 36 1 5.1048 -5.0700 2.7057 37 1 3.8682 -4.1937 3.6467 38 1 3.3444 -6.2356 1.4321 39 1 3.1015 -6.4985 3.1730 40 1 0.9832 -5.9600 1.9430 41 1 1.3573 -4.8058 3.2421 42 1 0.6447 -3.5704 1.2396 43 1 1.8841 -4.3976 0.2581 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686231716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:07:47 Heat of formation + Delta-G solvation = -59.938047 kcal Electronic energy + Delta-G solvation = -22235.514766 eV Core-core repulsion = 19279.356551 eV Total energy + Delta-G solvation = -2956.158215 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.66192 -39.19147 -35.74212 -34.71658 -33.01807 -32.70127 -30.45997 -29.84609 -27.33246 -26.86452 -24.16819 -23.90884 -22.58444 -21.65426 -20.75274 -19.98593 -18.42434 -17.18064 -16.61172 -16.25658 -16.13711 -15.81176 -15.51772 -15.17778 -14.52049 -14.40615 -14.18974 -13.95132 -13.66751 -13.45337 -13.28200 -13.03781 -12.93791 -12.79747 -12.46045 -12.32604 -12.15248 -12.13065 -12.05942 -11.89063 -11.63701 -11.49969 -11.18762 -11.14523 -10.90159 -10.85922 -10.53657 -9.65101 -9.40661 -8.00569 -6.23037 1.37752 1.40376 1.50613 2.43104 2.89382 3.18498 3.52844 3.70417 3.79344 4.02715 4.06938 4.16674 4.19232 4.25358 4.34718 4.42348 4.51797 4.53004 4.66958 4.70758 4.76462 4.81485 4.90295 5.00122 5.01025 5.02770 5.07418 5.10467 5.13903 5.15583 5.20799 5.27157 5.32049 5.35521 5.49740 5.50833 5.55720 5.70447 5.93880 6.15456 6.29654 6.38253 6.72521 7.23199 7.53244 8.99649 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.027872 B = 0.006448 C = 0.006117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.348649 B = 4341.540736 C = 4575.961541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.217 3.783 3 C -0.544 4.544 4 H 0.052 0.948 5 C 0.032 3.968 6 N -0.890 5.890 7 Si 0.944 3.056 8 H -0.267 1.267 9 H -0.278 1.278 10 H -0.286 1.286 11 C -0.138 4.138 12 C -0.123 4.123 13 C 0.097 3.903 14 C -0.131 4.131 15 C 0.050 3.950 16 N -0.516 5.516 17 C 0.049 3.951 18 C -0.106 4.106 19 C -0.118 4.118 20 C -0.098 4.098 21 C 0.080 3.920 22 H 0.020 0.980 23 O -0.375 6.375 24 H 0.027 0.973 25 H 0.057 0.943 26 H 0.040 0.960 27 H 0.256 0.744 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.025 0.975 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.019 0.981 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.046 0.954 42 H 0.053 0.947 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.692 -14.349 -1.478 15.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.180 3.820 3 C -0.582 4.582 4 H 0.070 0.930 5 C -0.170 4.170 6 N -0.528 5.528 7 Si 0.770 3.230 8 H -0.191 1.191 9 H -0.204 1.204 10 H -0.212 1.212 11 C -0.175 4.175 12 C -0.161 4.161 13 C 0.056 3.944 14 C -0.169 4.169 15 C -0.078 4.078 16 N -0.242 5.242 17 C -0.079 4.079 18 C -0.143 4.143 19 C -0.156 4.156 20 C -0.136 4.136 21 C -0.029 4.029 22 H 0.038 0.962 23 O -0.295 6.295 24 H 0.046 0.954 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.037 0.963 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.668 -14.531 -1.556 15.341 hybrid contribution 0.131 2.026 1.029 2.276 sum 4.799 -12.505 -0.527 13.404 Atomic orbital electron populations 1.21858 0.97799 0.98097 1.01212 1.19752 0.90775 0.89870 0.81616 1.21660 1.31690 0.96653 1.08216 0.93012 1.25704 0.94579 1.01620 0.95055 1.70118 1.35683 1.35971 1.11065 0.85740 0.78354 0.81013 0.77857 1.19083 1.20367 1.21245 1.23165 1.00623 0.95387 0.98359 1.23087 1.01863 0.96474 0.94651 1.21963 0.91147 0.87153 0.94123 1.22898 0.95933 0.97801 1.00249 1.22827 0.97028 0.90425 0.97473 1.63915 1.02057 1.12383 1.45841 1.22185 1.01161 0.93311 0.91259 1.21556 0.93035 0.96683 1.03044 1.21612 0.98036 0.97631 0.98320 1.21481 0.96701 0.94970 1.00452 1.22062 0.91314 0.92839 0.96656 0.96212 1.88561 1.67127 1.40613 1.33170 0.95391 0.92411 0.94090 0.93512 0.92442 0.90967 0.90233 0.89388 0.90285 0.93499 0.95620 0.88153 0.89015 0.96250 0.90547 0.89719 0.89901 0.93480 0.92856 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.56 8.51 71.98 0.61 -5.94 16 2 C 0.22 10.95 0.83 -11.04 -0.01 10.94 16 3 C -0.54 -30.39 8.23 25.60 0.21 -30.18 16 4 H 0.05 2.86 7.52 -2.91 -0.02 2.84 16 5 C 0.03 1.82 5.26 84.66 0.45 2.27 16 6 N -0.89 -52.92 10.92 21.45 0.23 -52.68 16 7 Si 0.94 44.53 29.54 68.60 2.03 46.55 16 8 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 9 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 10 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 11 C -0.14 -5.65 5.95 31.95 0.19 -5.46 16 12 C -0.12 -4.37 5.26 31.78 0.17 -4.21 16 13 C 0.10 3.93 1.06 -10.35 -0.01 3.92 16 14 C -0.13 -4.94 6.35 31.79 0.20 -4.74 16 15 C 0.05 1.57 6.74 87.09 0.59 2.16 16 16 N -0.52 -15.31 4.83 -865.14 -4.18 -19.49 16 17 C 0.05 1.18 5.88 86.76 0.51 1.69 16 18 C -0.11 -2.12 6.05 30.75 0.19 -1.93 16 19 C -0.12 -2.75 5.95 30.76 0.18 -2.57 16 20 C -0.10 -2.89 4.32 30.55 0.13 -2.76 16 21 C 0.08 2.82 2.15 44.01 0.09 2.92 16 22 H 0.02 0.83 7.96 -2.38 -0.02 0.81 16 23 O -0.38 -19.58 9.60 -148.98 -1.43 -21.01 16 24 H 0.03 1.23 8.14 -2.38 -0.02 1.22 16 25 H 0.06 3.24 6.01 -2.39 -0.01 3.23 16 26 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 27 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 28 H 0.06 2.38 7.66 -2.39 -0.02 2.36 16 29 H 0.07 2.71 7.82 -2.39 -0.02 2.69 16 30 H 0.08 2.64 6.03 -2.39 -0.01 2.63 16 31 H 0.09 2.73 7.71 -2.39 -0.02 2.71 16 32 H 0.08 2.72 7.47 -2.39 -0.02 2.71 16 33 H 0.05 2.08 8.02 -2.38 -0.02 2.06 16 34 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 36 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.02 0.52 7.98 -2.38 -0.02 0.50 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.05 1.71 8.09 -2.39 -0.02 1.69 16 43 H 0.08 2.29 6.86 -2.39 -0.02 2.28 16 Total: -1.00 -63.86 319.46 1.11 -62.75 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.96 Total: 17.77 kcal Atomic # 6 Polarization: -37.40 SS G_CDS: 3.50 Total: -33.90 kcal Atomic # 7 Polarization: -68.23 SS G_CDS: -3.95 Total: -72.17 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -1.43 Total: -21.01 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -63.86 1.11 -62.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686231716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.817 kcal (2) G-P(sol) polarization free energy of solvation -63.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds