Wall clock time and date at job start Mon Mar 30 2020 08:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50707 * 109.90319 * 2 1 4 4 H 1.07993 * 120.00110 * 239.05192 * 3 2 1 5 5 C 1.37875 * 119.99683 * 59.05580 * 3 2 1 6 6 N 1.31514 * 120.00237 * 359.97438 * 5 3 2 7 7 Si 1.86808 * 119.99702 * 180.02562 * 5 3 2 8 8 H 1.48493 * 109.47205 * 89.99766 * 7 5 3 9 9 H 1.48505 * 109.46913 * 209.99782 * 7 5 3 10 10 H 1.48499 * 109.47011 * 329.99817 * 7 5 3 11 11 C 1.54466 * 109.83691 * 239.05504 * 2 1 3 12 12 C 1.55480 * 102.51739 * 261.95353 * 11 2 1 13 13 C 1.53946 * 100.83811 * 326.79566 * 12 11 2 14 14 C 1.54081 * 110.34203 * 274.31368 * 13 12 11 15 15 C 1.55437 * 104.56411 * 237.58134 * 14 13 12 16 16 N 1.47152 * 103.55790 * 336.10689 * 15 14 13 17 17 C 1.45619 * 116.60329 * 162.00069 * 16 15 14 18 18 C 1.53633 * 107.79373 * 177.04839 * 17 16 15 19 19 C 1.52819 * 110.70933 * 57.41192 * 18 17 16 20 20 C 1.53666 * 110.60519 * 306.25391 * 19 18 17 21 21 C 1.48916 * 103.87726 * 41.68359 * 16 15 14 22 22 H 1.09003 * 110.05771 * 74.20081 * 21 16 15 23 23 O 1.42517 * 106.46291 * 35.13051 * 13 12 11 24 24 H 1.08998 * 109.46809 * 180.94241 * 1 2 3 25 25 H 1.09003 * 109.47031 * 300.94544 * 1 2 3 26 26 H 1.09003 * 109.46625 * 60.94404 * 1 2 3 27 27 H 0.97002 * 119.99597 * 180.02562 * 6 5 3 28 28 H 1.09002 * 110.83395 * 143.64145 * 11 2 1 29 29 H 1.09000 * 110.82962 * 20.26583 * 11 2 1 30 30 H 1.09001 * 111.14338 * 84.69312 * 12 11 2 31 31 H 1.08999 * 111.14473 * 208.85609 * 12 11 2 32 32 H 1.09005 * 110.41502 * 356.34543 * 14 13 12 33 33 H 1.08999 * 110.41988 * 118.68218 * 14 13 12 34 34 H 1.09004 * 110.60786 * 94.62971 * 15 14 13 35 35 H 1.09005 * 110.60640 * 217.59161 * 15 14 13 36 36 H 1.09000 * 109.79475 * 296.61194 * 17 16 15 37 37 H 1.08993 * 109.80133 * 57.41220 * 17 16 15 38 38 H 1.08996 * 109.23408 * 177.73469 * 18 17 16 39 39 H 1.09008 * 109.22679 * 297.09973 * 18 17 16 40 40 H 1.09006 * 109.24843 * 66.54367 * 19 18 17 41 41 H 1.09000 * 109.24828 * 185.96606 * 19 18 17 42 42 H 1.08992 * 109.83570 * 175.67348 * 20 19 18 43 43 H 1.08999 * 109.83293 * 296.57223 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0431 1.4171 0.0000 4 1 2.6791 1.7610 -0.8021 5 6 1.7004 2.2742 1.0241 6 7 0.9255 1.8554 2.0007 7 14 2.3358 4.0309 1.0237 8 1 1.3748 4.9047 0.3040 9 1 2.4828 4.5044 2.4236 10 1 3.6549 4.0800 0.3435 11 6 2.0542 -0.7472 -1.2462 12 6 2.3684 -2.1621 -0.6834 13 6 2.8151 -1.8118 0.7476 14 6 4.3158 -1.4630 0.7700 15 6 4.9353 -2.4670 1.7820 16 7 3.7983 -2.8390 2.6389 17 6 3.9453 -4.0553 3.4258 18 6 2.6858 -4.2093 4.2920 19 6 1.4314 -4.2452 3.4200 20 6 1.3816 -3.0204 2.4934 21 6 2.6693 -3.0048 1.6820 22 1 2.7862 -3.9334 1.1232 23 8 2.0211 -0.7018 1.1582 24 1 -0.3633 -1.0275 0.0169 25 1 -0.3633 0.5285 0.8814 26 1 -0.3633 0.4991 -0.8984 27 1 0.6842 2.4587 2.7210 28 1 2.9575 -0.2735 -1.6307 29 1 1.2867 -0.7988 -2.0185 30 1 1.4766 -2.7887 -0.6747 31 1 3.1744 -2.6375 -1.2424 32 1 4.7531 -1.6014 -0.2189 33 1 4.4629 -0.4379 1.1099 34 1 5.3273 -3.3419 1.2634 35 1 5.7172 -1.9859 2.3698 36 1 4.0442 -4.9145 2.7624 37 1 4.8259 -3.9783 4.0636 38 1 2.7533 -5.1357 4.8623 39 1 2.6196 -3.3678 4.9819 40 1 1.4393 -5.1527 2.8162 41 1 0.5489 -4.2478 4.0599 42 1 0.5243 -3.0971 1.8248 43 1 1.3069 -2.1098 3.0877 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686231718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:07:55 Heat of formation + Delta-G solvation = -59.860182 kcal Electronic energy + Delta-G solvation = -22350.779165 eV Core-core repulsion = 19394.624326 eV Total energy + Delta-G solvation = -2956.154839 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.51727 -39.10186 -35.73450 -34.63929 -32.73656 -32.68229 -30.59753 -29.80551 -27.30335 -26.85999 -24.08857 -23.79084 -22.53403 -21.42899 -20.72127 -20.21022 -18.36006 -17.04605 -16.51346 -16.49750 -15.94967 -15.72768 -15.34054 -15.08894 -14.61718 -14.43010 -14.05648 -13.95772 -13.57781 -13.40810 -13.28523 -12.97413 -12.85608 -12.72423 -12.49481 -12.34098 -12.17629 -12.04882 -11.94694 -11.84069 -11.74787 -11.47077 -11.14637 -11.03781 -10.96100 -10.83058 -10.47891 -9.61045 -9.15654 -7.95889 -6.17816 1.39953 1.41960 1.50378 2.45857 3.05494 3.18342 3.59925 3.69773 3.79299 4.05515 4.07491 4.17352 4.21147 4.28167 4.38943 4.43856 4.51663 4.57250 4.64422 4.71502 4.80469 4.85765 4.90177 4.92430 4.98269 5.04437 5.10383 5.10930 5.15273 5.20587 5.22179 5.30162 5.32872 5.39245 5.52227 5.61177 5.66550 5.78212 6.09531 6.19622 6.42014 6.46681 6.77381 7.30049 7.58274 9.03618 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022450 B = 0.007066 C = 0.006907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.903522 B = 3961.775733 C = 4053.134863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.216 3.784 3 C -0.546 4.546 4 H 0.049 0.951 5 C 0.035 3.965 6 N -0.885 5.885 7 Si 0.941 3.059 8 H -0.273 1.273 9 H -0.289 1.289 10 H -0.272 1.272 11 C -0.135 4.135 12 C -0.134 4.134 13 C 0.097 3.903 14 C -0.132 4.132 15 C 0.054 3.946 16 N -0.545 5.545 17 C 0.056 3.944 18 C -0.111 4.111 19 C -0.114 4.114 20 C -0.090 4.090 21 C 0.083 3.917 22 H 0.065 0.935 23 O -0.355 6.355 24 H 0.026 0.974 25 H 0.058 0.942 26 H 0.037 0.963 27 H 0.254 0.746 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.557 -13.940 -0.643 14.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.178 3.822 3 C -0.584 4.584 4 H 0.067 0.933 5 C -0.167 4.167 6 N -0.522 5.522 7 Si 0.767 3.233 8 H -0.199 1.199 9 H -0.215 1.215 10 H -0.197 1.197 11 C -0.173 4.173 12 C -0.172 4.172 13 C 0.056 3.944 14 C -0.170 4.170 15 C -0.074 4.074 16 N -0.271 5.271 17 C -0.072 4.072 18 C -0.149 4.149 19 C -0.151 4.151 20 C -0.128 4.128 21 C -0.024 4.024 22 H 0.083 0.917 23 O -0.275 6.275 24 H 0.045 0.955 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.368 -13.446 0.137 14.138 hybrid contribution 0.404 0.927 -0.566 1.158 sum 4.772 -12.519 -0.429 13.404 Atomic orbital electron populations 1.21836 0.97902 0.97966 1.01072 1.19830 0.90677 0.89862 0.81820 1.21584 1.31854 0.96759 1.08189 0.93260 1.25647 0.94637 1.01319 0.95093 1.70102 1.35478 1.35755 1.10868 0.85853 0.78976 0.81520 0.76944 1.19879 1.21466 1.19674 1.23119 1.00641 0.95046 0.98512 1.23139 1.01795 0.96987 0.95264 1.22040 0.91295 0.88204 0.92864 1.22951 0.95978 0.99121 0.98973 1.22782 0.93196 0.97527 0.93864 1.63797 1.04929 1.35110 1.23245 1.22083 0.98975 0.89761 0.96370 1.21574 0.93523 1.02034 0.97737 1.21586 0.98317 0.97194 0.98026 1.21135 0.95547 0.98304 0.97798 1.22231 0.92629 0.95532 0.92055 0.91730 1.88724 1.66787 1.40024 1.31938 0.95490 0.92360 0.94403 0.93623 0.92417 0.91149 0.90773 0.89044 0.90318 0.93577 0.92493 0.90619 0.93895 0.90180 0.89240 0.93240 0.91035 0.91547 0.92776 0.94005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.43 8.52 71.98 0.61 -5.82 16 2 C 0.22 10.76 0.83 -11.04 -0.01 10.75 16 3 C -0.55 -30.50 8.23 25.60 0.21 -30.29 16 4 H 0.05 2.72 7.52 -2.91 -0.02 2.70 16 5 C 0.04 2.01 5.26 84.65 0.45 2.45 16 6 N -0.88 -52.71 10.93 21.45 0.23 -52.47 16 7 Si 0.94 44.94 29.54 68.60 2.03 46.96 16 8 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 9 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 10 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 11 C -0.14 -5.47 5.94 31.95 0.19 -5.28 16 12 C -0.13 -4.56 5.84 31.77 0.19 -4.37 16 13 C 0.10 3.82 1.01 -10.36 -0.01 3.81 16 14 C -0.13 -4.88 6.36 31.80 0.20 -4.68 16 15 C 0.05 1.65 6.74 87.09 0.59 2.24 16 16 N -0.55 -18.01 4.83 -865.11 -4.18 -22.19 16 17 C 0.06 1.41 5.87 86.76 0.51 1.92 16 18 C -0.11 -2.71 6.05 30.75 0.19 -2.52 16 19 C -0.11 -2.97 5.95 30.76 0.18 -2.78 16 20 C -0.09 -3.16 5.14 30.56 0.16 -3.00 16 21 C 0.08 2.83 1.98 44.01 0.09 2.91 16 22 H 0.07 1.91 7.74 -2.39 -0.02 1.89 16 23 O -0.36 -18.07 8.53 -148.98 -1.27 -19.34 16 24 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.06 3.26 6.01 -2.39 -0.01 3.25 16 26 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 28 H 0.06 2.35 7.66 -2.39 -0.02 2.33 16 29 H 0.07 2.61 7.82 -2.39 -0.02 2.59 16 30 H 0.07 2.37 8.10 -2.39 -0.02 2.35 16 31 H 0.09 2.56 7.67 -2.39 -0.02 2.54 16 32 H 0.08 2.53 7.44 -2.38 -0.02 2.52 16 33 H 0.05 2.07 8.01 -2.39 -0.02 2.06 16 34 H 0.06 1.43 8.14 -2.38 -0.02 1.42 16 35 H 0.08 2.25 8.14 -2.38 -0.02 2.24 16 36 H 0.04 0.95 7.98 -2.39 -0.02 0.93 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.04 1.85 7.75 -2.39 -0.02 1.83 16 Total: -1.00 -64.66 322.33 1.30 -63.36 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.95 Total: 18.34 kcal Atomic # 6 Polarization: -38.19 SS G_CDS: 3.54 Total: -34.65 kcal Atomic # 7 Polarization: -70.72 SS G_CDS: -3.95 Total: -74.67 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -1.27 Total: -19.34 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -64.66 1.30 -63.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686231718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.501 kcal (2) G-P(sol) polarization free energy of solvation -64.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds