Wall clock time and date at job start Mon Mar 30 2020 07:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99815 * 2 1 4 4 H 1.48497 * 109.47102 * 270.00250 * 3 2 1 5 5 H 1.48506 * 109.47259 * 30.00148 * 3 2 1 6 6 H 1.48498 * 109.46991 * 150.00001 * 3 2 1 7 7 C 1.37873 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00354 * 0.02562 * 7 2 1 9 9 C 1.51277 * 119.99711 * 179.97438 * 7 2 1 10 10 H 1.09142 * 108.14278 * 298.36699 * 9 7 2 11 11 C 1.53027 * 108.73099 * 180.02562 * 9 7 2 12 12 C 1.53197 * 108.95350 * 185.18008 * 11 9 7 13 13 C 1.53068 * 108.30633 * 60.51800 * 12 11 9 14 14 C 1.52664 * 109.87692 * 301.80469 * 13 12 11 15 15 C 1.55466 * 107.92871 * 169.93308 * 14 13 12 16 16 C 1.55010 * 104.93788 * 119.51861 * 15 14 13 17 17 N 1.47198 * 103.55057 * 24.31119 * 16 15 14 18 18 C 1.45746 * 115.90942 * 198.01153 * 17 16 15 19 19 C 1.53579 * 107.96245 * 182.06335 * 18 17 16 20 20 C 1.52824 * 110.52328 * 302.42370 * 19 18 17 21 21 C 1.53768 * 110.42615 * 54.15141 * 20 19 18 22 22 C 1.48806 * 103.68160 * 318.01493 * 17 16 15 23 23 H 1.09303 * 109.84597 * 286.09119 * 22 17 16 24 24 O 1.41249 * 112.47303 * 50.22423 * 14 13 12 25 25 H 0.96995 * 120.00179 * 359.97438 * 1 2 3 26 26 H 1.08964 * 109.59627 * 65.33288 * 11 9 7 27 27 H 1.08967 * 109.58677 * 305.00812 * 11 9 7 28 28 H 1.08845 * 109.80792 * 300.44678 * 12 11 9 29 29 H 1.09025 * 109.51232 * 180.02562 * 12 11 9 30 30 H 1.09049 * 109.58761 * 181.56805 * 13 12 11 31 31 H 1.09121 * 109.42993 * 61.80415 * 13 12 11 32 32 H 1.08912 * 109.91175 * 238.55639 * 15 14 13 33 33 H 1.08923 * 109.90067 * 0.50313 * 15 14 13 34 34 H 1.09020 * 110.81599 * 265.77824 * 16 15 14 35 35 H 1.09037 * 110.76777 * 142.80654 * 16 15 14 36 36 H 1.09010 * 109.70658 * 301.72606 * 18 17 16 37 37 H 1.09001 * 109.71162 * 62.38570 * 18 17 16 38 38 H 1.08981 * 109.29898 * 62.68614 * 19 18 17 39 39 H 1.08999 * 109.26547 * 182.20345 * 19 18 17 40 40 H 1.08973 * 109.29789 * 294.00102 * 20 19 18 41 41 H 1.08947 * 109.30249 * 174.33890 * 20 19 18 42 42 H 1.09021 * 109.31309 * 184.01647 * 21 20 19 43 43 H 1.08969 * 109.62137 * 63.23602 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5173 -1.1940 -0.0011 10 1 3.8568 -0.7010 -0.9138 11 6 4.0087 -2.6432 -0.0023 12 6 5.5351 -2.6511 0.1279 13 6 5.9084 -1.9762 1.4501 14 6 5.3558 -0.5535 1.4808 15 6 5.5319 -0.0027 2.9239 16 6 6.4446 1.2405 2.7686 17 7 6.2241 1.6582 1.3744 18 6 7.2338 2.5433 0.8075 19 6 6.8003 2.9026 -0.6213 20 6 6.6220 1.6382 -1.4610 21 6 5.6566 0.6639 -0.7658 22 6 6.2091 0.3751 0.6208 23 1 7.2249 -0.0205 0.5413 24 8 3.9853 -0.4991 1.1433 25 1 -0.4850 0.8400 0.0004 26 1 3.7200 -3.1263 -0.9353 27 1 3.5686 -3.1789 0.8384 28 1 5.9791 -2.1081 -0.7044 29 1 5.8953 -3.6802 0.1276 30 1 6.9937 -1.9456 1.5513 31 1 5.4858 -2.5450 2.2800 32 1 4.5632 0.2801 3.3338 33 1 6.0091 -0.7539 3.5519 34 1 7.4902 0.9758 2.9277 35 1 6.1424 2.0305 3.4566 36 1 7.3088 3.4488 1.4099 37 1 8.1976 2.0347 0.7848 38 1 5.8563 3.4459 -0.5854 39 1 7.5613 3.5338 -1.0801 40 1 7.5890 1.1529 -1.5910 41 1 6.2190 1.9077 -2.4367 42 1 5.5980 -0.2590 -1.3431 43 1 4.6701 1.1200 -0.6872 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686232010.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:26 Heat of formation + Delta-G solvation = -38.400530 kcal Electronic energy + Delta-G solvation = -22824.709203 eV Core-core repulsion = 19869.484925 eV Total energy + Delta-G solvation = -2955.224279 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.43880 -37.47273 -34.73878 -32.99128 -32.53364 -31.37003 -29.73794 -28.64044 -26.10564 -24.52318 -22.93503 -22.01113 -21.72734 -20.28327 -19.59025 -18.62321 -16.74315 -15.90326 -15.31788 -14.97262 -14.74685 -14.65200 -14.04495 -13.76992 -13.55255 -13.32608 -13.06286 -12.57210 -12.51463 -12.25944 -12.16489 -11.87536 -11.39583 -11.14321 -11.02925 -10.90034 -10.76043 -10.71562 -10.40757 -10.33421 -10.21631 -10.10531 -9.81934 -9.55922 -9.29576 -8.81979 -8.36053 -8.13469 -7.77351 -5.99717 -4.08882 3.51138 3.61054 3.94935 4.18412 4.64728 4.69744 4.81755 4.92982 5.06508 5.18650 5.28133 5.35842 5.40950 5.46816 5.51873 5.53920 5.60352 5.65115 5.74887 5.81621 5.86918 5.90984 5.96686 6.04154 6.12522 6.16015 6.23547 6.25838 6.31219 6.44920 6.45516 6.49759 6.61065 6.65663 6.74306 6.80018 6.84063 7.22816 7.32335 7.47980 7.74822 8.53458 8.85859 9.08648 9.65159 11.09323 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.017490 B = 0.010728 C = 0.008724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.503765 B = 2609.421654 C = 3208.877849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.084 3.916 3 Si 0.844 3.156 4 H -0.291 1.291 5 H -0.301 1.301 6 H -0.174 1.174 7 C -0.516 4.516 8 H 0.076 0.924 9 C 0.181 3.819 10 H 0.022 0.978 11 C -0.135 4.135 12 C -0.124 4.124 13 C -0.135 4.135 14 C 0.127 3.873 15 C -0.117 4.117 16 C 0.045 3.955 17 N -0.514 5.514 18 C 0.056 3.944 19 C -0.115 4.115 20 C -0.122 4.122 21 C -0.119 4.119 22 C 0.057 3.943 23 H 0.041 0.959 24 O -0.353 6.353 25 H 0.263 0.737 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.033 0.967 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.027 0.973 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.751 1.872 1.828 16.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.120 4.120 3 Si 0.671 3.329 4 H -0.219 1.219 5 H -0.228 1.228 6 H -0.096 1.096 7 C -0.553 4.553 8 H 0.094 0.906 9 C 0.126 3.874 10 H 0.039 0.961 11 C -0.173 4.173 12 C -0.162 4.162 13 C -0.173 4.173 14 C 0.086 3.914 15 C -0.155 4.155 16 C -0.082 4.082 17 N -0.239 5.239 18 C -0.073 4.073 19 C -0.153 4.153 20 C -0.159 4.159 21 C -0.157 4.157 22 C -0.051 4.051 23 H 0.059 0.941 24 O -0.273 6.273 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 16.030 2.378 1.914 16.318 hybrid contribution 1.220 0.325 -0.148 1.271 sum 17.250 2.703 1.766 17.549 Atomic orbital electron populations 1.69943 1.06903 1.27365 1.49155 1.25052 0.94603 1.00067 0.92292 0.87599 0.85035 0.81701 0.78553 1.21852 1.22801 1.09599 1.21119 0.87545 0.94598 1.52044 0.90633 1.20228 0.94701 0.87274 0.85177 0.96068 1.22078 0.92986 1.00584 1.01665 1.21628 0.98161 0.99397 0.96992 1.22144 0.99552 0.96925 0.98717 1.21234 0.85858 0.91561 0.92772 1.22838 1.00643 0.95755 0.96220 1.22783 0.97127 0.97600 0.90739 1.64058 1.45404 1.12532 1.01870 1.22020 0.92440 0.96902 0.95927 1.21568 1.01727 0.97751 0.94217 1.21655 0.99232 0.96197 0.98838 1.21910 1.00814 0.99095 0.93837 1.22818 0.97623 0.90027 0.94666 0.94085 1.87607 1.18671 1.72020 1.48958 0.92743 0.92105 0.92077 0.92376 0.92879 0.92594 0.91417 0.89471 0.91332 0.94922 0.90525 0.91153 0.95496 0.91188 0.92140 0.92966 0.92001 0.91347 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.14 13.96 55.43 0.77 -27.36 16 2 C 0.08 2.49 5.47 -17.82 -0.10 2.39 16 3 Si 0.84 21.76 24.70 -169.99 -4.20 17.57 16 4 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 5 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 6 H -0.17 -4.19 4.13 56.52 0.23 -3.96 16 7 C -0.52 -14.75 9.37 -34.16 -0.32 -15.07 16 8 H 0.08 2.32 7.97 -52.49 -0.42 1.90 16 9 C 0.18 4.24 1.57 -27.59 -0.04 4.19 16 10 H 0.02 0.51 4.67 -51.85 -0.24 0.27 16 11 C -0.14 -2.70 5.29 -26.62 -0.14 -2.84 16 12 C -0.12 -2.01 5.93 -26.59 -0.16 -2.17 16 13 C -0.14 -2.13 4.47 -26.87 -0.12 -2.25 16 14 C 0.13 2.28 0.92 -89.66 -0.08 2.20 16 15 C -0.12 -1.86 6.41 -24.36 -0.16 -2.01 16 16 C 0.05 0.65 6.68 -2.60 -0.02 0.64 16 17 N -0.51 -8.36 4.89 -224.77 -1.10 -9.46 16 18 C 0.06 0.75 5.82 -4.15 -0.02 0.73 16 19 C -0.11 -1.56 6.06 -26.52 -0.16 -1.72 16 20 C -0.12 -1.75 5.96 -26.42 -0.16 -1.91 16 21 C -0.12 -2.10 3.77 -26.83 -0.10 -2.20 16 22 C 0.06 0.95 1.53 -67.33 -0.10 0.85 16 23 H 0.04 0.64 7.43 -51.76 -0.38 0.26 16 24 O -0.35 -7.93 5.70 -35.01 -0.20 -8.13 16 25 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 26 H 0.06 1.18 8.14 -51.95 -0.42 0.76 16 27 H 0.06 1.26 8.14 -51.95 -0.42 0.84 16 28 H 0.06 0.92 6.41 -52.02 -0.33 0.58 16 29 H 0.05 0.75 8.14 -51.91 -0.42 0.33 16 30 H 0.06 0.76 7.76 -51.90 -0.40 0.36 16 31 H 0.07 1.06 8.01 -51.86 -0.42 0.65 16 32 H 0.09 1.55 7.91 -51.98 -0.41 1.14 16 33 H 0.07 0.93 7.52 -51.97 -0.39 0.54 16 34 H 0.03 0.41 8.13 -51.92 -0.42 -0.01 16 35 H 0.08 1.04 8.15 -51.91 -0.42 0.61 16 36 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 37 H 0.03 0.34 7.98 -51.93 -0.41 -0.07 16 38 H 0.07 1.05 8.14 -51.94 -0.42 0.63 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.67 8.14 -51.94 -0.42 0.25 16 41 H 0.06 0.86 8.14 -51.96 -0.42 0.43 16 42 H 0.07 1.20 5.49 -51.92 -0.28 0.91 16 43 H 0.09 1.92 3.22 -51.95 -0.17 1.76 16 LS Contribution 300.89 15.07 4.53 4.53 Total: -1.00 -31.13 300.89 -9.27 -40.39 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.39 Total: 1.63 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -1.68 Total: -19.18 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: -0.33 Total: -36.82 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -0.20 Total: -8.13 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.20 Total: 17.57 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.13 -9.27 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686232010.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.993 kcal (2) G-P(sol) polarization free energy of solvation -31.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds