Wall clock time and date at job start Mon Mar 30 2020 07:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99815 * 2 1 4 4 H 1.48497 * 109.47102 * 270.00250 * 3 2 1 5 5 H 1.48506 * 109.47259 * 30.00148 * 3 2 1 6 6 H 1.48498 * 109.46991 * 150.00001 * 3 2 1 7 7 C 1.37873 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00354 * 0.02562 * 7 2 1 9 9 C 1.51277 * 119.99711 * 179.97438 * 7 2 1 10 10 H 1.09142 * 108.14278 * 298.36699 * 9 7 2 11 11 C 1.53027 * 108.73099 * 180.02562 * 9 7 2 12 12 C 1.53197 * 108.95350 * 185.18008 * 11 9 7 13 13 C 1.53068 * 108.30633 * 60.51800 * 12 11 9 14 14 C 1.52664 * 109.87692 * 301.80469 * 13 12 11 15 15 C 1.55466 * 107.92871 * 169.93308 * 14 13 12 16 16 C 1.55010 * 104.93788 * 119.51861 * 15 14 13 17 17 N 1.47198 * 103.55057 * 24.31119 * 16 15 14 18 18 C 1.45746 * 115.90942 * 198.01153 * 17 16 15 19 19 C 1.53579 * 107.96245 * 182.06335 * 18 17 16 20 20 C 1.52824 * 110.52328 * 302.42370 * 19 18 17 21 21 C 1.53768 * 110.42615 * 54.15141 * 20 19 18 22 22 C 1.48806 * 103.68160 * 318.01493 * 17 16 15 23 23 H 1.09303 * 109.84597 * 286.09119 * 22 17 16 24 24 O 1.41249 * 112.47303 * 50.22423 * 14 13 12 25 25 H 0.96995 * 120.00179 * 359.97438 * 1 2 3 26 26 H 1.08964 * 109.59627 * 65.33288 * 11 9 7 27 27 H 1.08967 * 109.58677 * 305.00812 * 11 9 7 28 28 H 1.08845 * 109.80792 * 300.44678 * 12 11 9 29 29 H 1.09025 * 109.51232 * 180.02562 * 12 11 9 30 30 H 1.09049 * 109.58761 * 181.56805 * 13 12 11 31 31 H 1.09121 * 109.42993 * 61.80415 * 13 12 11 32 32 H 1.08912 * 109.91175 * 238.55639 * 15 14 13 33 33 H 1.08923 * 109.90067 * 0.50313 * 15 14 13 34 34 H 1.09020 * 110.81599 * 265.77824 * 16 15 14 35 35 H 1.09037 * 110.76777 * 142.80654 * 16 15 14 36 36 H 1.09010 * 109.70658 * 301.72606 * 18 17 16 37 37 H 1.09001 * 109.71162 * 62.38570 * 18 17 16 38 38 H 1.08981 * 109.29898 * 62.68614 * 19 18 17 39 39 H 1.08999 * 109.26547 * 182.20345 * 19 18 17 40 40 H 1.08973 * 109.29789 * 294.00102 * 20 19 18 41 41 H 1.08947 * 109.30249 * 174.33890 * 20 19 18 42 42 H 1.09021 * 109.31309 * 184.01647 * 21 20 19 43 43 H 1.08969 * 109.62137 * 63.23602 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5173 -1.1940 -0.0011 10 1 3.8568 -0.7010 -0.9138 11 6 4.0087 -2.6432 -0.0023 12 6 5.5351 -2.6511 0.1279 13 6 5.9084 -1.9762 1.4501 14 6 5.3558 -0.5535 1.4808 15 6 5.5319 -0.0027 2.9239 16 6 6.4446 1.2405 2.7686 17 7 6.2241 1.6582 1.3744 18 6 7.2338 2.5433 0.8075 19 6 6.8003 2.9026 -0.6213 20 6 6.6220 1.6382 -1.4610 21 6 5.6566 0.6639 -0.7658 22 6 6.2091 0.3751 0.6208 23 1 7.2249 -0.0205 0.5413 24 8 3.9853 -0.4991 1.1433 25 1 -0.4850 0.8400 0.0004 26 1 3.7200 -3.1263 -0.9353 27 1 3.5686 -3.1789 0.8384 28 1 5.9791 -2.1081 -0.7044 29 1 5.8953 -3.6802 0.1276 30 1 6.9937 -1.9456 1.5513 31 1 5.4858 -2.5450 2.2800 32 1 4.5632 0.2801 3.3338 33 1 6.0091 -0.7539 3.5519 34 1 7.4902 0.9758 2.9277 35 1 6.1424 2.0305 3.4566 36 1 7.3088 3.4488 1.4099 37 1 8.1976 2.0347 0.7848 38 1 5.8563 3.4459 -0.5854 39 1 7.5613 3.5338 -1.0801 40 1 7.5890 1.1529 -1.5910 41 1 6.2190 1.9077 -2.4367 42 1 5.5980 -0.2590 -1.3431 43 1 4.6701 1.1200 -0.6872 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686232010.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:26 Heat of formation + Delta-G solvation = -59.453101 kcal Electronic energy + Delta-G solvation = -22825.622111 eV Core-core repulsion = 19869.484925 eV Total energy + Delta-G solvation = -2956.137187 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.74434 -38.88272 -36.00249 -34.71103 -34.33951 -32.86827 -31.08500 -29.92936 -27.81236 -25.95702 -24.09768 -23.64542 -22.97832 -21.64612 -20.77276 -20.06250 -18.93461 -17.31748 -16.78327 -16.30663 -16.05859 -16.01327 -15.74933 -15.05804 -14.95734 -14.76529 -14.29324 -14.20155 -13.94094 -13.74658 -13.42910 -13.32747 -12.96323 -12.60141 -12.49705 -12.23433 -12.13767 -12.03640 -11.95468 -11.79939 -11.64116 -11.51808 -11.26724 -11.09863 -11.02687 -10.79001 -10.31822 -9.52504 -9.15093 -8.30851 -6.42953 1.39812 1.46418 1.87458 2.51175 2.89516 3.09853 3.45645 3.65434 3.75662 4.00339 4.00875 4.11487 4.14008 4.22850 4.33506 4.37196 4.40046 4.44404 4.46942 4.63880 4.67877 4.76691 4.80502 4.83300 4.92892 4.95492 5.01348 5.04972 5.09097 5.13847 5.20745 5.23936 5.24801 5.27075 5.32909 5.40483 5.53575 5.62557 5.70054 6.06588 6.27015 6.42333 6.63553 7.25178 7.44970 8.81549 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.017490 B = 0.010728 C = 0.008724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.503765 B = 2609.421654 C = 3208.877849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.028 3.972 3 Si 0.906 3.094 4 H -0.291 1.291 5 H -0.316 1.316 6 H -0.147 1.147 7 C -0.524 4.524 8 H 0.036 0.964 9 C 0.193 3.807 10 H 0.022 0.978 11 C -0.135 4.135 12 C -0.115 4.115 13 C -0.131 4.131 14 C 0.108 3.892 15 C -0.117 4.117 16 C 0.051 3.949 17 N -0.543 5.543 18 C 0.057 3.943 19 C -0.115 4.115 20 C -0.118 4.118 21 C -0.126 4.126 22 C 0.062 3.938 23 H 0.064 0.936 24 O -0.378 6.378 25 H 0.263 0.737 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.311 2.326 2.293 21.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.170 4.170 3 Si 0.732 3.268 4 H -0.218 1.218 5 H -0.245 1.245 6 H -0.068 1.068 7 C -0.561 4.561 8 H 0.055 0.945 9 C 0.137 3.863 10 H 0.039 0.961 11 C -0.173 4.173 12 C -0.153 4.153 13 C -0.169 4.169 14 C 0.068 3.932 15 C -0.155 4.155 16 C -0.076 4.076 17 N -0.269 5.269 18 C -0.071 4.071 19 C -0.153 4.153 20 C -0.156 4.156 21 C -0.164 4.164 22 C -0.046 4.046 23 H 0.082 0.918 24 O -0.298 6.298 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 20.619 2.817 2.384 20.947 hybrid contribution -0.214 0.106 -0.277 0.366 sum 20.406 2.923 2.107 20.721 Atomic orbital electron populations 1.70082 1.08613 1.28018 1.51938 1.25886 0.95192 1.03600 0.92346 0.86733 0.84559 0.76999 0.78488 1.21849 1.24459 1.06807 1.21518 0.90991 0.92857 1.50728 0.94548 1.19853 0.91287 0.89599 0.85526 0.96089 1.22000 0.96432 0.97937 1.00941 1.21575 0.94471 1.01435 0.97782 1.22135 1.01518 0.95091 0.98179 1.21684 0.83518 0.93733 0.94286 1.22868 1.00066 0.97393 0.95136 1.22781 0.98091 0.96801 0.89942 1.64015 1.47411 1.12698 1.02733 1.22076 0.92414 0.96991 0.95608 1.21596 1.01549 0.97462 0.94706 1.21637 0.99371 0.96033 0.98537 1.21869 0.99875 0.99447 0.95163 1.22702 0.98036 0.90139 0.93702 0.91824 1.87422 1.22268 1.72034 1.48056 0.92876 0.92371 0.93612 0.91514 0.90119 0.89100 0.91614 0.92280 0.88713 0.92214 0.90069 0.90005 0.93669 0.93480 0.89347 0.90704 0.92105 0.91877 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.48 13.96 21.45 0.30 -62.18 16 2 C 0.03 1.76 5.47 84.65 0.46 2.22 16 3 Si 0.91 47.14 24.70 68.60 1.69 48.84 16 4 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 5 H -0.32 -17.04 7.11 99.48 0.71 -16.33 16 6 H -0.15 -6.99 4.13 99.48 0.41 -6.58 16 7 C -0.52 -31.28 9.37 25.78 0.24 -31.04 16 8 H 0.04 2.38 7.97 -2.91 -0.02 2.36 16 9 C 0.19 9.09 1.57 30.04 0.05 9.14 16 10 H 0.02 1.02 4.67 -2.31 -0.01 1.01 16 11 C -0.14 -5.34 5.29 30.67 0.16 -5.17 16 12 C -0.12 -3.35 5.93 30.68 0.18 -3.17 16 13 C -0.13 -3.61 4.47 30.51 0.14 -3.47 16 14 C 0.11 3.58 0.92 -10.17 -0.01 3.57 16 15 C -0.12 -3.37 6.41 32.13 0.21 -3.17 16 16 C 0.05 1.26 6.68 86.93 0.58 1.84 16 17 N -0.54 -15.63 4.89 -865.03 -4.23 -19.87 16 18 C 0.06 1.28 5.82 86.72 0.50 1.79 16 19 C -0.12 -2.71 6.06 30.73 0.19 -2.52 16 20 C -0.12 -3.00 5.96 30.79 0.18 -2.82 16 21 C -0.13 -4.12 3.77 30.53 0.11 -4.01 16 22 C 0.06 1.84 1.53 44.11 0.07 1.91 16 23 H 0.06 1.62 7.43 -2.23 -0.02 1.60 16 24 O -0.38 -16.74 5.70 -148.17 -0.84 -17.58 16 25 H 0.26 16.43 8.31 -92.71 -0.77 15.66 16 26 H 0.06 2.27 8.14 -2.41 -0.02 2.25 16 27 H 0.05 1.91 8.14 -2.40 -0.02 1.89 16 28 H 0.07 1.85 6.41 -2.47 -0.02 1.84 16 29 H 0.08 1.95 8.14 -2.37 -0.02 1.93 16 30 H 0.09 1.92 7.76 -2.36 -0.02 1.90 16 31 H 0.07 1.84 8.01 -2.32 -0.02 1.82 16 32 H 0.06 2.03 7.91 -2.43 -0.02 2.01 16 33 H 0.09 2.20 7.52 -2.43 -0.02 2.18 16 34 H 0.06 1.17 8.13 -2.38 -0.02 1.15 16 35 H 0.08 1.91 8.15 -2.37 -0.02 1.90 16 36 H 0.08 1.65 8.14 -2.38 -0.02 1.64 16 37 H 0.05 0.88 7.98 -2.39 -0.02 0.86 16 38 H 0.05 1.31 8.14 -2.40 -0.02 1.29 16 39 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.07 1.57 8.14 -2.40 -0.02 1.55 16 41 H 0.06 1.53 8.14 -2.42 -0.02 1.51 16 42 H 0.06 2.07 5.49 -2.38 -0.01 2.05 16 43 H 0.06 2.24 3.22 -2.40 -0.01 2.23 16 Total: -1.00 -71.32 300.89 0.66 -70.66 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.68 Total: 15.04 kcal Atomic # 6 Polarization: -37.97 SS G_CDS: 3.07 Total: -34.91 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -3.93 Total: -82.05 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.84 Total: -17.58 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.69 Total: 48.84 kcal Total: -71.32 0.66 -70.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686232010.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.208 kcal (2) G-P(sol) polarization free energy of solvation -71.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds