Wall clock time and date at job start Mon Mar 30 2020 07:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00158 * 2 1 4 4 H 1.48503 * 109.47311 * 240.00635 * 3 2 1 5 5 H 1.48502 * 109.47023 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47291 * 120.00176 * 3 2 1 7 7 C 1.37877 * 120.00221 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00404 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99856 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.48478 * 299.96472 * 9 7 2 11 11 C 1.53083 * 109.50303 * 179.97438 * 9 7 2 12 12 C 1.53190 * 109.23185 * 181.91463 * 11 9 7 13 13 C 1.53265 * 108.95844 * 57.47911 * 12 11 9 14 14 C 1.52558 * 109.23700 * 303.90089 * 13 12 11 15 15 C 1.54823 * 109.62580 * 294.54168 * 14 13 12 16 16 C 1.55297 * 104.66322 * 238.70785 * 15 14 13 17 17 N 1.47134 * 103.68050 * 336.23861 * 16 15 14 18 18 C 1.45661 * 116.52282 * 162.03731 * 17 16 15 19 19 C 1.53622 * 107.81972 * 177.29017 * 18 17 16 20 20 C 1.52820 * 110.71694 * 57.36137 * 19 18 17 21 21 C 1.53668 * 110.60184 * 306.27644 * 20 19 18 22 22 C 1.48800 * 103.77417 * 41.87186 * 17 16 15 23 23 H 1.08997 * 110.26187 * 74.65916 * 22 17 16 24 24 O 1.42294 * 110.81731 * 56.11152 * 14 13 12 25 25 H 0.97005 * 120.00370 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.51432 * 301.84067 * 11 9 7 27 27 H 1.09006 * 109.51417 * 61.99141 * 11 9 7 28 28 H 1.09002 * 109.55349 * 177.32214 * 12 11 9 29 29 H 1.08998 * 109.55696 * 297.53497 * 12 11 9 30 30 H 1.09009 * 109.50646 * 183.97382 * 13 12 11 31 31 H 1.09004 * 109.51330 * 63.83506 * 13 12 11 32 32 H 1.09002 * 110.34802 * 119.96541 * 15 14 13 33 33 H 1.09005 * 110.52273 * 357.54140 * 15 14 13 34 34 H 1.09002 * 110.61063 * 217.64451 * 16 15 14 35 35 H 1.09006 * 110.60772 * 94.82651 * 16 15 14 36 36 H 1.09001 * 109.79330 * 296.86973 * 18 17 16 37 37 H 1.09005 * 109.79528 * 57.71026 * 18 17 16 38 38 H 1.08998 * 109.22591 * 297.04642 * 19 18 17 39 39 H 1.09000 * 109.22993 * 177.68298 * 19 18 17 40 40 H 1.09006 * 109.24695 * 185.99055 * 20 19 18 41 41 H 1.09001 * 109.25128 * 66.56986 * 20 19 18 42 42 H 1.08998 * 109.84296 * 296.63515 * 21 20 19 43 43 H 1.09007 * 109.83720 * 175.66433 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6251 -2.5576 0.8899 11 6 2.2451 -3.6633 -0.0018 12 6 1.4735 -4.9857 -0.0501 13 6 0.5799 -4.9956 -1.2953 14 6 -0.3325 -3.7733 -1.2689 15 6 -1.3103 -3.8800 -0.0732 16 6 -2.7234 -3.8387 -0.7161 17 7 -2.5021 -3.1531 -1.9990 18 6 -3.5405 -3.3107 -3.0083 19 6 -3.1427 -2.4658 -4.2280 20 6 -1.7708 -2.8871 -4.7532 21 6 -0.7264 -2.8520 -3.6266 22 6 -1.2332 -3.7448 -2.5027 23 1 -1.4088 -4.7544 -2.8743 24 8 0.4293 -2.5756 -1.1683 25 1 -0.4851 0.8401 0.0004 26 1 2.8931 -3.5878 -0.8751 27 1 2.8492 -3.6272 0.9048 28 1 2.1769 -5.8170 -0.0992 29 1 0.8573 -5.0815 0.8438 30 1 -0.0258 -5.9020 -1.3015 31 1 1.2018 -4.9665 -2.1900 32 1 -1.1761 -3.0354 0.6027 33 1 -1.1626 -4.8199 0.4586 34 1 -3.4127 -3.2707 -0.0913 35 1 -3.0997 -4.8484 -0.8806 36 1 -3.6199 -4.3591 -3.2956 37 1 -4.4950 -2.9622 -2.6135 38 1 -3.1099 -1.4147 -3.9413 39 1 -3.8849 -2.5996 -5.0150 40 1 -1.4654 -2.2060 -5.5476 41 1 -1.8343 -3.8991 -5.1531 42 1 -0.6080 -1.8311 -3.2634 43 1 0.2283 -3.2273 -3.9953 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686232013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:31 Heat of formation + Delta-G solvation = -50.369780 kcal Electronic energy + Delta-G solvation = -22375.335716 eV Core-core repulsion = 19419.592411 eV Total energy + Delta-G solvation = -2955.743304 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.03202 -37.40945 -34.11969 -32.78305 -32.36126 -31.27533 -28.95349 -28.51634 -25.86112 -24.30975 -22.65252 -21.99510 -21.44855 -20.46492 -19.20699 -17.91696 -16.48039 -15.58913 -15.23455 -14.70177 -14.52870 -14.27270 -14.05368 -13.62670 -13.39721 -13.05053 -12.86204 -12.49313 -12.37781 -12.00257 -11.96005 -11.55721 -10.98877 -10.86166 -10.81310 -10.70883 -10.64839 -10.42006 -10.33955 -10.31895 -10.15134 -10.01270 -9.85566 -9.69466 -9.25743 -8.72300 -8.37590 -7.84899 -7.67370 -5.88913 -4.01758 3.37849 3.42756 3.45028 4.40414 4.49835 4.92620 5.06469 5.15870 5.24717 5.44909 5.47484 5.53412 5.63397 5.67621 5.69624 5.73082 5.78532 5.86414 5.95263 5.96690 6.07938 6.15491 6.18624 6.28089 6.36858 6.37744 6.43818 6.44392 6.51559 6.61750 6.65783 6.69666 6.89657 6.91851 6.99710 7.11253 7.16907 7.52442 7.62069 7.75742 7.99870 8.39888 8.90080 9.28915 9.67489 11.16880 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.017656 B = 0.008380 C = 0.006798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.443586 B = 3340.640997 C = 4117.981585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.082 3.918 3 Si 0.885 3.115 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.531 4.531 8 H 0.060 0.940 9 C 0.220 3.780 10 H 0.016 0.984 11 C -0.145 4.145 12 C -0.119 4.119 13 C -0.136 4.136 14 C 0.122 3.878 15 C -0.147 4.147 16 C 0.050 3.950 17 N -0.508 5.508 18 C 0.057 3.943 19 C -0.112 4.112 20 C -0.119 4.119 21 C -0.095 4.095 22 C 0.087 3.913 23 H 0.041 0.959 24 O -0.327 6.327 25 H 0.260 0.740 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.025 0.975 36 H 0.023 0.977 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.047 0.953 42 H 0.093 0.907 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.082 -8.978 -4.916 11.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.125 4.125 3 Si 0.713 3.287 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.568 4.568 8 H 0.078 0.922 9 C 0.164 3.836 10 H 0.034 0.966 11 C -0.183 4.183 12 C -0.157 4.157 13 C -0.174 4.174 14 C 0.080 3.920 15 C -0.185 4.185 16 C -0.077 4.077 17 N -0.233 5.233 18 C -0.072 4.072 19 C -0.150 4.150 20 C -0.157 4.157 21 C -0.133 4.133 22 C -0.021 4.021 23 H 0.059 0.941 24 O -0.246 6.246 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.044 0.956 36 H 0.041 0.959 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.111 0.889 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.279 -8.163 -4.967 10.916 hybrid contribution 0.251 -0.296 0.034 0.390 sum -5.028 -8.459 -4.933 11.008 Atomic orbital electron populations 1.70038 1.05635 1.26338 1.46238 1.25021 0.94735 0.98836 0.93929 0.86795 0.79784 0.83575 0.78552 1.20227 1.21305 1.20334 1.20901 0.92461 0.89773 1.53696 0.92188 1.19696 0.86784 0.91700 0.85399 0.96634 1.22273 0.99700 0.95430 1.00883 1.21631 0.98207 0.98379 0.97434 1.22083 0.98668 0.97827 0.98844 1.21247 0.90298 0.87947 0.92528 1.23303 0.93772 1.02053 0.99343 1.22745 0.98239 0.95194 0.91571 1.63867 1.02807 1.54233 1.02346 1.21992 0.95207 0.97243 0.92757 1.21553 0.96491 1.01060 0.95926 1.21626 0.95519 1.00183 0.98384 1.21272 0.96256 1.02709 0.93032 1.22200 0.90128 0.95088 0.94666 0.94087 1.88321 1.57561 1.33257 1.45421 0.93046 0.92678 0.92692 0.93395 0.92575 0.92968 0.91961 0.88800 0.92489 0.90835 0.95649 0.95891 0.91327 0.90984 0.92551 0.92302 0.93388 0.88857 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.73 12.84 55.43 0.71 -24.02 16 2 C 0.08 2.30 5.40 -17.82 -0.10 2.20 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -14.85 8.80 -34.44 -0.30 -15.16 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.22 5.56 2.19 -27.84 -0.06 5.50 16 10 H 0.02 0.44 6.46 -51.93 -0.34 0.10 16 11 C -0.14 -3.07 5.34 -26.59 -0.14 -3.22 16 12 C -0.12 -2.11 5.79 -26.50 -0.15 -2.27 16 13 C -0.14 -2.39 4.63 -26.82 -0.12 -2.52 16 14 C 0.12 2.45 0.91 -89.99 -0.08 2.36 16 15 C -0.15 -2.82 5.39 -24.55 -0.13 -2.96 16 16 C 0.05 0.87 6.71 -2.48 -0.02 0.86 16 17 N -0.51 -9.33 4.85 -224.63 -1.09 -10.42 16 18 C 0.06 0.85 5.87 -4.17 -0.02 0.83 16 19 C -0.11 -1.62 6.06 -26.50 -0.16 -1.78 16 20 C -0.12 -1.77 5.95 -26.48 -0.16 -1.92 16 21 C -0.09 -1.74 5.14 -26.78 -0.14 -1.88 16 22 C 0.09 1.60 1.96 -67.17 -0.13 1.46 16 23 H 0.04 0.70 7.72 -51.93 -0.40 0.30 16 24 O -0.33 -8.13 8.08 -35.23 -0.28 -8.42 16 25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.98 6.97 -51.93 -0.36 0.61 16 30 H 0.05 0.81 8.14 -51.92 -0.42 0.38 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.09 2.15 6.50 -51.93 -0.34 1.81 16 33 H 0.06 0.97 6.83 -51.93 -0.35 0.62 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.02 0.32 7.97 -51.93 -0.41 -0.09 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 2.09 7.66 -51.93 -0.40 1.69 16 43 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 LS Contribution 318.77 15.07 4.80 4.80 Total: -1.00 -29.22 318.77 -10.24 -39.46 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -7.64 Total: 0.61 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -1.72 Total: -18.47 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: -0.38 Total: -34.44 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.28 Total: -8.42 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.22 -10.24 -39.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686232013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.905 kcal (2) G-P(sol) polarization free energy of solvation -29.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds