Wall clock time and date at job start Mon Mar 30 2020 07:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00158 * 2 1 4 4 H 1.48503 * 109.47311 * 240.00635 * 3 2 1 5 5 H 1.48502 * 109.47023 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47291 * 120.00176 * 3 2 1 7 7 C 1.37877 * 120.00221 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00404 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99856 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.48478 * 299.96472 * 9 7 2 11 11 C 1.53083 * 109.50303 * 179.97438 * 9 7 2 12 12 C 1.53190 * 109.23185 * 181.91463 * 11 9 7 13 13 C 1.53265 * 108.95844 * 57.47911 * 12 11 9 14 14 C 1.52558 * 109.23700 * 303.90089 * 13 12 11 15 15 C 1.54823 * 109.62580 * 294.54168 * 14 13 12 16 16 C 1.55297 * 104.66322 * 238.70785 * 15 14 13 17 17 N 1.47134 * 103.68050 * 336.23861 * 16 15 14 18 18 C 1.45661 * 116.52282 * 162.03731 * 17 16 15 19 19 C 1.53622 * 107.81972 * 177.29017 * 18 17 16 20 20 C 1.52820 * 110.71694 * 57.36137 * 19 18 17 21 21 C 1.53668 * 110.60184 * 306.27644 * 20 19 18 22 22 C 1.48800 * 103.77417 * 41.87186 * 17 16 15 23 23 H 1.08997 * 110.26187 * 74.65916 * 22 17 16 24 24 O 1.42294 * 110.81731 * 56.11152 * 14 13 12 25 25 H 0.97005 * 120.00370 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.51432 * 301.84067 * 11 9 7 27 27 H 1.09006 * 109.51417 * 61.99141 * 11 9 7 28 28 H 1.09002 * 109.55349 * 177.32214 * 12 11 9 29 29 H 1.08998 * 109.55696 * 297.53497 * 12 11 9 30 30 H 1.09009 * 109.50646 * 183.97382 * 13 12 11 31 31 H 1.09004 * 109.51330 * 63.83506 * 13 12 11 32 32 H 1.09002 * 110.34802 * 119.96541 * 15 14 13 33 33 H 1.09005 * 110.52273 * 357.54140 * 15 14 13 34 34 H 1.09002 * 110.61063 * 217.64451 * 16 15 14 35 35 H 1.09006 * 110.60772 * 94.82651 * 16 15 14 36 36 H 1.09001 * 109.79330 * 296.86973 * 18 17 16 37 37 H 1.09005 * 109.79528 * 57.71026 * 18 17 16 38 38 H 1.08998 * 109.22591 * 297.04642 * 19 18 17 39 39 H 1.09000 * 109.22993 * 177.68298 * 19 18 17 40 40 H 1.09006 * 109.24695 * 185.99055 * 20 19 18 41 41 H 1.09001 * 109.25128 * 66.56986 * 20 19 18 42 42 H 1.08998 * 109.84296 * 296.63515 * 21 20 19 43 43 H 1.09007 * 109.83720 * 175.66433 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6251 -2.5576 0.8899 11 6 2.2451 -3.6633 -0.0018 12 6 1.4735 -4.9857 -0.0501 13 6 0.5799 -4.9956 -1.2953 14 6 -0.3325 -3.7733 -1.2689 15 6 -1.3103 -3.8800 -0.0732 16 6 -2.7234 -3.8387 -0.7161 17 7 -2.5021 -3.1531 -1.9990 18 6 -3.5405 -3.3107 -3.0083 19 6 -3.1427 -2.4658 -4.2280 20 6 -1.7708 -2.8871 -4.7532 21 6 -0.7264 -2.8520 -3.6266 22 6 -1.2332 -3.7448 -2.5027 23 1 -1.4088 -4.7544 -2.8743 24 8 0.4293 -2.5756 -1.1683 25 1 -0.4851 0.8401 0.0004 26 1 2.8931 -3.5878 -0.8751 27 1 2.8492 -3.6272 0.9048 28 1 2.1769 -5.8170 -0.0992 29 1 0.8573 -5.0815 0.8438 30 1 -0.0258 -5.9020 -1.3015 31 1 1.2018 -4.9665 -2.1900 32 1 -1.1761 -3.0354 0.6027 33 1 -1.1626 -4.8199 0.4586 34 1 -3.4127 -3.2707 -0.0913 35 1 -3.0997 -4.8484 -0.8806 36 1 -3.6199 -4.3591 -3.2956 37 1 -4.4950 -2.9622 -2.6135 38 1 -3.1099 -1.4147 -3.9413 39 1 -3.8849 -2.5996 -5.0150 40 1 -1.4654 -2.2060 -5.5476 41 1 -1.8343 -3.8991 -5.1531 42 1 -0.6080 -1.8311 -3.2634 43 1 0.2283 -3.2273 -3.9953 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686232013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:30 Heat of formation + Delta-G solvation = -68.234858 kcal Electronic energy + Delta-G solvation = -22376.110404 eV Core-core repulsion = 19419.592411 eV Total energy + Delta-G solvation = -2956.517992 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.50330 -38.94878 -35.58369 -34.62159 -34.05094 -32.90180 -30.48834 -29.95915 -27.66774 -25.91107 -23.98138 -23.72425 -22.88286 -21.98220 -20.52750 -19.52088 -18.55530 -17.10231 -16.82450 -16.44466 -16.02766 -15.91558 -15.42364 -15.01174 -14.93090 -14.63636 -14.22117 -14.10512 -13.82538 -13.69456 -13.32654 -13.03852 -12.83239 -12.65696 -12.47378 -12.25140 -12.14026 -12.04309 -11.92244 -11.79743 -11.60968 -11.51674 -11.42804 -11.13756 -10.88622 -10.70865 -10.34605 -9.49561 -9.11268 -8.04243 -6.24484 1.40785 1.43344 1.50289 2.44351 3.08295 3.13335 3.59348 3.70941 3.86937 4.05088 4.09607 4.14603 4.20635 4.26294 4.33156 4.37095 4.45898 4.53997 4.54943 4.65745 4.71242 4.78495 4.86641 4.87275 4.91176 5.00450 5.04921 5.08052 5.13981 5.17981 5.21495 5.28925 5.34421 5.36155 5.40727 5.52369 5.62805 5.69185 5.87859 6.14729 6.33071 6.49912 6.77218 7.41156 7.53738 9.00543 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.017656 B = 0.008380 C = 0.006798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.443586 B = 3340.640997 C = 4117.981585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.032 3.968 3 Si 0.950 3.050 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.557 4.557 8 H 0.057 0.943 9 C 0.221 3.779 10 H -0.017 1.017 11 C -0.140 4.140 12 C -0.113 4.113 13 C -0.131 4.131 14 C 0.105 3.895 15 C -0.143 4.143 16 C 0.056 3.944 17 N -0.541 5.541 18 C 0.056 3.944 19 C -0.111 4.111 20 C -0.113 4.113 21 C -0.092 4.092 22 C 0.090 3.910 23 H 0.068 0.932 24 O -0.356 6.356 25 H 0.257 0.743 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.044 0.956 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.038 0.962 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.576 -11.143 -6.218 13.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.172 4.172 3 Si 0.775 3.225 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.594 4.594 8 H 0.076 0.924 9 C 0.165 3.835 10 H 0.001 0.999 11 C -0.178 4.178 12 C -0.150 4.150 13 C -0.169 4.169 14 C 0.064 3.936 15 C -0.181 4.181 16 C -0.072 4.072 17 N -0.267 5.267 18 C -0.072 4.072 19 C -0.149 4.149 20 C -0.150 4.150 21 C -0.130 4.130 22 C -0.018 4.018 23 H 0.086 0.914 24 O -0.275 6.275 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.057 0.943 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.767 -10.338 -6.268 13.394 hybrid contribution 0.390 0.374 0.452 0.704 sum -5.377 -9.964 -5.815 12.729 Atomic orbital electron populations 1.70197 1.07094 1.26777 1.47472 1.25796 0.95536 1.02273 0.93582 0.85776 0.78557 0.79339 0.78860 1.19878 1.21009 1.19173 1.21355 0.92727 0.91672 1.53669 0.92441 1.19458 0.87088 0.92419 0.84543 0.99901 1.22135 0.98942 0.96102 1.00593 1.21594 0.98549 0.97057 0.97793 1.22053 0.98497 0.97712 0.98624 1.21661 0.90798 0.87333 0.93855 1.23190 0.95301 1.01020 0.98566 1.22692 0.96721 0.96717 0.91037 1.63810 1.03892 1.55475 1.03492 1.22086 0.94486 0.98595 0.92014 1.21566 0.97195 0.99336 0.96771 1.21583 0.94449 1.01959 0.97033 1.21165 0.97746 0.99535 0.94602 1.22192 0.89746 0.96149 0.93674 0.91431 1.88213 1.58372 1.36362 1.44558 0.93438 0.93340 0.92539 0.90140 0.92358 0.89606 0.91914 0.93714 0.90192 0.91492 0.92467 0.93677 0.90570 0.93708 0.89192 0.91619 0.90758 0.94260 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.95 12.84 21.45 0.28 -53.67 16 2 C 0.03 1.86 5.40 84.66 0.46 2.31 16 3 Si 0.95 45.44 29.54 68.60 2.03 47.46 16 4 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.56 -32.43 8.80 25.60 0.23 -32.21 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.22 11.65 2.19 29.88 0.07 11.72 16 10 H -0.02 -0.95 6.46 -2.39 -0.02 -0.97 16 11 C -0.14 -5.96 5.34 30.69 0.16 -5.80 16 12 C -0.11 -3.77 5.79 30.75 0.18 -3.59 16 13 C -0.13 -4.28 4.63 30.54 0.14 -4.14 16 14 C 0.10 4.17 0.91 -10.39 -0.01 4.16 16 15 C -0.14 -5.50 5.39 32.01 0.17 -5.33 16 16 C 0.06 1.87 6.71 87.05 0.58 2.45 16 17 N -0.54 -19.39 4.85 -864.61 -4.19 -23.58 16 18 C 0.06 1.55 5.87 86.75 0.51 2.06 16 19 C -0.11 -2.96 6.06 30.74 0.19 -2.77 16 20 C -0.11 -3.10 5.95 30.76 0.18 -2.91 16 21 C -0.09 -3.38 5.14 30.56 0.16 -3.23 16 22 C 0.09 3.18 1.96 44.22 0.09 3.27 16 23 H 0.07 2.03 7.72 -2.39 -0.02 2.02 16 24 O -0.36 -18.40 8.08 -148.98 -1.20 -19.61 16 25 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 28 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.06 1.93 6.97 -2.39 -0.02 1.91 16 30 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.04 2.16 6.50 -2.39 -0.02 2.14 16 33 H 0.08 2.62 6.83 -2.38 -0.02 2.60 16 34 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.05 1.07 7.97 -2.39 -0.02 1.05 16 37 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.04 1.84 7.66 -2.39 -0.02 1.82 16 43 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -67.31 318.77 0.96 -66.35 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.96 Total: 17.06 kcal Atomic # 6 Polarization: -37.11 SS G_CDS: 3.10 Total: -34.01 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -3.92 Total: -77.25 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -1.20 Total: -19.61 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -67.31 0.96 -66.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686232013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.889 kcal (2) G-P(sol) polarization free energy of solvation -67.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds