Wall clock time and date at job start Mon Mar 30 2020 07:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.48176 * 299.95535 * 9 7 2 11 11 C 1.53095 * 109.48535 * 179.90361 * 9 7 2 12 12 C 1.53182 * 109.23684 * 181.94922 * 11 9 7 13 13 C 1.53265 * 108.96761 * 57.46056 * 12 11 9 14 14 C 1.52570 * 109.23335 * 303.89951 * 13 12 11 15 15 C 1.54574 * 109.72478 * 294.60217 * 14 13 12 16 16 C 1.55299 * 104.77796 * 243.55017 * 15 14 13 17 17 N 1.47126 * 103.53488 * 23.95010 * 16 15 14 18 18 C 1.45646 * 116.55728 * 197.80471 * 17 16 15 19 19 C 1.53624 * 107.81388 * 182.76916 * 18 17 16 20 20 C 1.52825 * 110.70293 * 302.60848 * 19 18 17 21 21 C 1.53662 * 110.60419 * 53.74850 * 20 19 18 22 22 C 1.48805 * 103.78032 * 318.02782 * 17 16 15 23 23 H 1.09000 * 110.27144 * 285.88913 * 22 17 16 24 24 O 1.42290 * 110.80565 * 56.12299 * 14 13 12 25 25 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.50858 * 301.88112 * 11 9 7 27 27 H 1.09002 * 109.51125 * 62.02090 * 11 9 7 28 28 H 1.09004 * 109.55871 * 297.61223 * 12 11 9 29 29 H 1.09008 * 109.63582 * 177.35446 * 12 11 9 30 30 H 1.09000 * 109.51247 * 183.96986 * 13 12 11 31 31 H 1.09000 * 109.54952 * 63.85115 * 13 12 11 32 32 H 1.08999 * 110.38054 * 2.37621 * 15 14 13 33 33 H 1.09003 * 110.37859 * 124.73270 * 15 14 13 34 34 H 1.09001 * 110.60793 * 142.45966 * 16 15 14 35 35 H 1.08999 * 110.61531 * 265.43776 * 16 15 14 36 36 H 1.08995 * 109.79381 * 302.34554 * 18 17 16 37 37 H 1.09005 * 109.79370 * 63.13422 * 18 17 16 38 38 H 1.08999 * 109.22826 * 62.92102 * 19 18 17 39 39 H 1.09002 * 109.23606 * 182.33322 * 19 18 17 40 40 H 1.09001 * 109.24824 * 174.03652 * 20 19 18 41 41 H 1.08996 * 109.24752 * 293.49392 * 20 19 18 42 42 H 1.09003 * 109.84171 * 63.38021 * 21 20 19 43 43 H 1.09003 * 109.83816 * 184.27749 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6246 -2.5572 0.8907 11 6 2.2457 -3.6630 -0.0012 12 6 1.4747 -4.9857 -0.0504 13 6 0.5808 -4.9953 -1.2954 14 6 -0.3323 -3.7733 -1.2680 15 6 -1.3082 -3.8780 -0.0739 16 6 -2.7176 -3.9636 -0.7206 17 7 -2.4469 -4.4889 -2.0680 18 6 -3.4996 -4.3132 -3.0590 19 6 -3.0389 -4.9898 -4.3590 20 6 -1.7096 -4.4027 -4.8320 21 6 -0.6601 -4.4687 -3.7115 22 6 -1.2335 -3.7445 -2.5014 23 1 -1.4918 -2.7164 -2.7554 24 8 0.4292 -2.5755 -1.1671 25 1 -0.4850 -0.8401 -0.0004 26 1 2.8937 -3.5866 -0.8743 27 1 2.8496 -3.6271 0.9055 28 1 0.8573 -5.0816 0.8427 29 1 2.1773 -5.8177 -0.0993 30 1 -0.0243 -5.9019 -1.3022 31 1 1.2020 -4.9656 -2.1906 32 1 -1.1021 -4.7769 0.5071 33 1 -1.2332 -2.9920 0.5565 34 1 -3.3549 -4.6495 -0.1623 35 1 -3.1739 -2.9755 -0.7786 36 1 -4.4198 -4.7790 -2.7066 37 1 -3.6677 -3.2505 -3.2346 38 1 -2.9172 -6.0587 -4.1837 39 1 -3.7933 -4.8362 -5.1307 40 1 -1.3526 -4.9687 -5.6924 41 1 -1.8592 -3.3630 -5.1228 42 1 -0.4551 -5.5086 -3.4573 43 1 0.2584 -3.9793 -4.0356 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686232015.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:39 Heat of formation + Delta-G solvation = -59.848536 kcal Electronic energy + Delta-G solvation = -22277.143969 eV Core-core repulsion = 19320.989635 eV Total energy + Delta-G solvation = -2956.154334 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.33868 -37.67059 -34.34033 -33.17602 -32.51625 -31.51046 -28.98149 -28.55205 -25.60722 -24.40865 -22.93995 -22.10374 -21.64255 -20.79735 -19.42924 -17.95844 -17.00675 -16.06279 -15.22584 -14.83077 -14.57670 -14.29808 -13.88849 -13.69056 -13.58866 -13.55442 -13.17869 -12.95519 -12.40573 -12.18829 -11.82770 -11.70470 -11.20040 -11.09687 -10.88791 -10.86127 -10.74919 -10.61135 -10.56287 -10.23649 -10.14678 -10.06886 -10.06796 -9.93236 -9.33135 -8.59586 -8.34060 -8.15298 -8.04128 -6.33588 -4.11921 3.44412 3.47125 3.65197 4.15079 4.53364 4.75664 4.85511 5.03100 5.06614 5.28945 5.31197 5.39517 5.48371 5.59799 5.63338 5.64968 5.67217 5.73185 5.78743 5.87014 5.93576 6.00489 6.05557 6.15554 6.19346 6.22080 6.25896 6.29860 6.35910 6.37727 6.51531 6.59573 6.60955 6.75998 6.78869 6.83558 6.86376 7.19709 7.35335 7.46082 8.13797 8.40856 8.81320 8.93804 9.70284 11.06667 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022263 B = 0.006822 C = 0.006220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.376000 B = 4103.188486 C = 4500.505148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.033 3.967 3 Si 1.067 2.933 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.601 4.601 8 H 0.056 0.944 9 C 0.205 3.795 10 H 0.009 0.991 11 C -0.136 4.136 12 C -0.123 4.123 13 C -0.126 4.126 14 C 0.120 3.880 15 C -0.147 4.147 16 C 0.046 3.954 17 N -0.523 5.523 18 C 0.054 3.946 19 C -0.111 4.111 20 C -0.121 4.121 21 C -0.101 4.101 22 C 0.081 3.919 23 H 0.060 0.940 24 O -0.363 6.363 25 H 0.279 0.721 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.041 0.959 36 H 0.070 0.930 37 H 0.033 0.967 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.742 -10.348 -5.187 12.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.176 4.176 3 Si 0.895 3.105 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.638 4.638 8 H 0.074 0.926 9 C 0.150 3.850 10 H 0.026 0.974 11 C -0.174 4.174 12 C -0.161 4.161 13 C -0.163 4.163 14 C 0.078 3.922 15 C -0.186 4.186 16 C -0.081 4.081 17 N -0.249 5.249 18 C -0.075 4.075 19 C -0.149 4.149 20 C -0.158 4.158 21 C -0.139 4.139 22 C -0.027 4.027 23 H 0.078 0.922 24 O -0.282 6.282 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.089 0.911 37 H 0.051 0.949 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.913 -9.116 -5.289 11.628 hybrid contribution -0.015 -1.054 0.148 1.064 sum -4.928 -10.170 -5.141 12.416 Atomic orbital electron populations 1.70664 1.06927 1.31784 1.43132 1.25830 0.96565 1.02552 0.92631 0.83591 0.74983 0.75359 0.76550 1.20761 1.21370 1.21384 1.21896 0.93880 0.90746 1.57256 0.92609 1.19907 0.87283 0.93546 0.84291 0.97384 1.22110 0.99326 0.94910 1.01072 1.21698 0.98372 0.98182 0.97838 1.21978 0.98018 0.98051 0.98292 1.21239 0.90464 0.87874 0.92608 1.23245 0.94107 1.02379 0.98823 1.22788 0.97676 0.97910 0.89773 1.63886 1.05126 1.54131 1.01744 1.22003 0.94421 0.98636 0.92392 1.21557 0.96884 1.00633 0.95817 1.21607 0.95310 1.00837 0.98077 1.21496 0.97693 1.01049 0.93686 1.22138 0.90380 0.96087 0.94092 0.92240 1.88271 1.58344 1.34667 1.46956 0.90899 0.92502 0.92580 0.92663 0.93097 0.91720 0.91847 0.91406 0.90184 0.90851 0.94089 0.91128 0.94911 0.91459 0.92100 0.92130 0.92442 0.90921 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.05 13.53 55.43 0.75 -26.30 16 2 C 0.03 0.94 5.40 -17.82 -0.10 0.85 16 3 Si 1.07 25.29 29.90 -169.99 -5.08 20.21 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.60 -17.16 8.80 -34.44 -0.30 -17.46 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.20 5.24 1.80 -27.83 -0.05 5.19 16 10 H 0.01 0.23 6.43 -51.93 -0.33 -0.10 16 11 C -0.14 -2.94 5.34 -26.59 -0.14 -3.09 16 12 C -0.12 -2.22 5.79 -26.50 -0.15 -2.38 16 13 C -0.13 -2.23 3.58 -26.81 -0.10 -2.33 16 14 C 0.12 2.39 0.96 -90.12 -0.09 2.30 16 15 C -0.15 -2.78 5.36 -24.69 -0.13 -2.91 16 16 C 0.05 0.77 6.72 -2.48 -0.02 0.75 16 17 N -0.52 -8.33 4.84 -224.64 -1.09 -9.42 16 18 C 0.05 0.74 5.87 -4.18 -0.02 0.71 16 19 C -0.11 -1.32 6.06 -26.50 -0.16 -1.48 16 20 C -0.12 -1.56 5.95 -26.48 -0.16 -1.72 16 21 C -0.10 -1.56 4.42 -26.78 -0.12 -1.68 16 22 C 0.08 1.46 2.10 -67.16 -0.14 1.32 16 23 H 0.06 1.25 7.94 -51.93 -0.41 0.83 16 24 O -0.36 -9.16 8.54 -35.23 -0.30 -9.46 16 25 H 0.28 8.48 6.27 -40.82 -0.26 8.23 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.05 0.98 6.84 -51.93 -0.36 0.62 16 29 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 30 H 0.06 1.06 7.97 -51.93 -0.41 0.64 16 31 H 0.06 1.13 7.06 -51.93 -0.37 0.76 16 32 H 0.07 1.18 6.61 -51.93 -0.34 0.83 16 33 H 0.08 1.73 6.49 -51.93 -0.34 1.39 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.03 0.48 7.98 -51.93 -0.41 0.06 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 1.08 6.97 -51.93 -0.36 0.72 16 43 H 0.07 1.12 8.09 -51.93 -0.42 0.70 16 LS Contribution 314.09 15.07 4.73 4.73 Total: -1.00 -30.23 314.09 -10.11 -40.35 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -7.44 Total: 1.83 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: -1.68 Total: -21.93 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.34 Total: -35.72 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.30 Total: -9.46 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.08 Total: 20.21 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.23 -10.11 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686232015.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.503 kcal (2) G-P(sol) polarization free energy of solvation -30.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds