Wall clock time and date at job start Mon Mar 30 2020 07:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.48176 * 299.95535 * 9 7 2 11 11 C 1.53095 * 109.48535 * 179.90361 * 9 7 2 12 12 C 1.53182 * 109.23684 * 181.94922 * 11 9 7 13 13 C 1.53265 * 108.96761 * 57.46056 * 12 11 9 14 14 C 1.52570 * 109.23335 * 303.89951 * 13 12 11 15 15 C 1.54574 * 109.72478 * 294.60217 * 14 13 12 16 16 C 1.55299 * 104.77796 * 243.55017 * 15 14 13 17 17 N 1.47126 * 103.53488 * 23.95010 * 16 15 14 18 18 C 1.45646 * 116.55728 * 197.80471 * 17 16 15 19 19 C 1.53624 * 107.81388 * 182.76916 * 18 17 16 20 20 C 1.52825 * 110.70293 * 302.60848 * 19 18 17 21 21 C 1.53662 * 110.60419 * 53.74850 * 20 19 18 22 22 C 1.48805 * 103.78032 * 318.02782 * 17 16 15 23 23 H 1.09000 * 110.27144 * 285.88913 * 22 17 16 24 24 O 1.42290 * 110.80565 * 56.12299 * 14 13 12 25 25 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.50858 * 301.88112 * 11 9 7 27 27 H 1.09002 * 109.51125 * 62.02090 * 11 9 7 28 28 H 1.09004 * 109.55871 * 297.61223 * 12 11 9 29 29 H 1.09008 * 109.63582 * 177.35446 * 12 11 9 30 30 H 1.09000 * 109.51247 * 183.96986 * 13 12 11 31 31 H 1.09000 * 109.54952 * 63.85115 * 13 12 11 32 32 H 1.08999 * 110.38054 * 2.37621 * 15 14 13 33 33 H 1.09003 * 110.37859 * 124.73270 * 15 14 13 34 34 H 1.09001 * 110.60793 * 142.45966 * 16 15 14 35 35 H 1.08999 * 110.61531 * 265.43776 * 16 15 14 36 36 H 1.08995 * 109.79381 * 302.34554 * 18 17 16 37 37 H 1.09005 * 109.79370 * 63.13422 * 18 17 16 38 38 H 1.08999 * 109.22826 * 62.92102 * 19 18 17 39 39 H 1.09002 * 109.23606 * 182.33322 * 19 18 17 40 40 H 1.09001 * 109.24824 * 174.03652 * 20 19 18 41 41 H 1.08996 * 109.24752 * 293.49392 * 20 19 18 42 42 H 1.09003 * 109.84171 * 63.38021 * 21 20 19 43 43 H 1.09003 * 109.83816 * 184.27749 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6246 -2.5572 0.8907 11 6 2.2457 -3.6630 -0.0012 12 6 1.4747 -4.9857 -0.0504 13 6 0.5808 -4.9953 -1.2954 14 6 -0.3323 -3.7733 -1.2680 15 6 -1.3082 -3.8780 -0.0739 16 6 -2.7176 -3.9636 -0.7206 17 7 -2.4469 -4.4889 -2.0680 18 6 -3.4996 -4.3132 -3.0590 19 6 -3.0389 -4.9898 -4.3590 20 6 -1.7096 -4.4027 -4.8320 21 6 -0.6601 -4.4687 -3.7115 22 6 -1.2335 -3.7445 -2.5014 23 1 -1.4918 -2.7164 -2.7554 24 8 0.4292 -2.5755 -1.1671 25 1 -0.4850 -0.8401 -0.0004 26 1 2.8937 -3.5866 -0.8743 27 1 2.8496 -3.6271 0.9055 28 1 0.8573 -5.0816 0.8427 29 1 2.1773 -5.8177 -0.0993 30 1 -0.0243 -5.9019 -1.3022 31 1 1.2020 -4.9656 -2.1906 32 1 -1.1021 -4.7769 0.5071 33 1 -1.2332 -2.9920 0.5565 34 1 -3.3549 -4.6495 -0.1623 35 1 -3.1739 -2.9755 -0.7786 36 1 -4.4198 -4.7790 -2.7066 37 1 -3.6677 -3.2505 -3.2346 38 1 -2.9172 -6.0587 -4.1837 39 1 -3.7933 -4.8362 -5.1307 40 1 -1.3526 -4.9687 -5.6924 41 1 -1.8592 -3.3630 -5.1228 42 1 -0.4551 -5.5086 -3.4573 43 1 0.2584 -3.9793 -4.0356 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686232015.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:39 Heat of formation + Delta-G solvation = -78.706617 kcal Electronic energy + Delta-G solvation = -22277.961717 eV Core-core repulsion = 19320.989635 eV Total energy + Delta-G solvation = -2956.972082 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.81754 -39.22653 -35.74886 -34.94492 -34.28928 -33.09951 -30.39376 -30.06104 -27.34057 -26.09295 -24.32067 -23.80880 -23.06258 -22.21798 -20.79686 -19.53083 -19.09764 -17.55574 -16.72311 -16.34095 -16.00232 -15.72197 -15.54737 -15.50237 -15.19687 -14.88031 -14.65082 -14.25369 -13.90561 -13.49800 -13.43587 -13.21865 -13.06144 -12.70667 -12.44615 -12.42502 -12.28746 -11.98465 -11.94617 -11.88366 -11.73745 -11.59528 -11.46424 -11.22178 -10.92686 -10.69913 -10.39164 -9.89992 -9.51837 -8.62592 -6.42821 1.50236 1.59044 1.78086 2.54565 2.76158 3.10551 3.43357 3.53728 3.75593 3.92741 3.96440 4.00396 4.09239 4.15250 4.18966 4.23840 4.31965 4.38881 4.43885 4.56883 4.61835 4.64932 4.70598 4.74392 4.79778 4.91917 4.92899 4.99662 5.00497 5.07334 5.09992 5.16364 5.18760 5.21703 5.28986 5.32045 5.45373 5.51495 5.79119 6.01365 6.14392 6.18339 6.57923 7.01655 7.50734 8.76338 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022263 B = 0.006822 C = 0.006220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.376000 B = 4103.188486 C = 4500.505148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.019 4.019 3 Si 1.115 2.885 4 H -0.284 1.284 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.624 4.624 8 H 0.053 0.947 9 C 0.205 3.795 10 H -0.018 1.018 11 C -0.131 4.131 12 C -0.117 4.117 13 C -0.117 4.117 14 C 0.104 3.896 15 C -0.144 4.144 16 C 0.050 3.950 17 N -0.510 5.510 18 C 0.047 3.953 19 C -0.104 4.104 20 C -0.119 4.119 21 C -0.097 4.097 22 C 0.083 3.917 23 H 0.016 0.984 24 O -0.395 6.395 25 H 0.265 0.735 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.039 0.961 34 H 0.104 0.896 35 H 0.020 0.980 36 H 0.094 0.906 37 H 0.016 0.984 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.044 0.956 42 H 0.087 0.913 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.851 -12.687 -6.158 14.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.221 4.221 3 Si 0.936 3.064 4 H -0.209 1.209 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.661 4.661 8 H 0.072 0.928 9 C 0.149 3.851 10 H 0.000 1.000 11 C -0.169 4.169 12 C -0.154 4.154 13 C -0.155 4.155 14 C 0.064 3.936 15 C -0.182 4.182 16 C -0.078 4.078 17 N -0.235 5.235 18 C -0.081 4.081 19 C -0.142 4.142 20 C -0.157 4.157 21 C -0.135 4.135 22 C -0.025 4.025 23 H 0.034 0.966 24 O -0.315 6.315 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.058 0.942 34 H 0.122 0.878 35 H 0.039 0.961 36 H 0.112 0.888 37 H 0.034 0.966 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.063 0.937 42 H 0.106 0.894 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.022 -11.485 -6.262 14.012 hybrid contribution -0.022 -0.349 0.456 0.574 sum -5.044 -11.833 -5.806 14.113 Atomic orbital electron populations 1.70779 1.07946 1.31000 1.45687 1.27340 0.96639 1.06490 0.91610 0.82998 0.74217 0.71243 0.77970 1.20907 1.19890 1.18971 1.22350 0.94165 0.92622 1.56922 0.92836 1.19710 0.87626 0.94204 0.83511 1.00038 1.21999 0.98570 0.95566 1.00803 1.21669 0.98704 0.96909 0.98106 1.21924 0.97746 0.97544 0.98242 1.21647 0.90964 0.87080 0.93958 1.23161 0.95555 1.01255 0.98276 1.22790 0.96527 0.97836 0.90654 1.63979 1.05107 1.52705 1.01711 1.22216 0.94677 0.98302 0.92916 1.21551 0.96667 1.00792 0.95188 1.21620 0.95369 1.00750 0.97945 1.21481 0.97779 1.01020 0.93216 1.22069 0.91295 0.94569 0.94570 0.96605 1.88141 1.59237 1.37878 1.46272 0.92388 0.93250 0.92299 0.92327 0.89697 0.89128 0.91732 0.89517 0.94220 0.87763 0.96121 0.88790 0.96556 0.90203 0.89629 0.89587 0.93749 0.89422 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.54 13.53 21.45 0.29 -58.25 16 2 C -0.02 -1.14 5.40 84.65 0.46 -0.68 16 3 Si 1.11 51.82 29.90 68.60 2.05 53.87 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.62 -36.90 8.80 25.60 0.23 -36.67 16 8 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 9 C 0.20 10.91 1.80 29.88 0.05 10.97 16 10 H -0.02 -1.02 6.43 -2.38 -0.02 -1.03 16 11 C -0.13 -5.69 5.34 30.69 0.16 -5.53 16 12 C -0.12 -3.97 5.79 30.74 0.18 -3.80 16 13 C -0.12 -3.95 3.58 30.54 0.11 -3.84 16 14 C 0.10 4.22 0.96 -10.47 -0.01 4.21 16 15 C -0.14 -5.54 5.36 31.92 0.17 -5.37 16 16 C 0.05 1.64 6.72 87.05 0.59 2.22 16 17 N -0.51 -15.54 4.84 -864.64 -4.18 -19.73 16 18 C 0.05 1.19 5.87 86.75 0.51 1.70 16 19 C -0.10 -2.14 6.06 30.75 0.19 -1.96 16 20 C -0.12 -2.83 5.95 30.76 0.18 -2.65 16 21 C -0.10 -2.88 4.42 30.56 0.14 -2.74 16 22 C 0.08 3.05 2.10 44.22 0.09 3.14 16 23 H 0.02 0.71 7.94 -2.39 -0.02 0.69 16 24 O -0.40 -20.91 8.54 -148.98 -1.27 -22.19 16 25 H 0.27 17.26 6.27 -92.71 -0.58 16.68 16 26 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.06 1.96 6.84 -2.39 -0.02 1.95 16 29 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 30 H 0.09 2.63 7.97 -2.39 -0.02 2.61 16 31 H 0.06 2.17 7.06 -2.39 -0.02 2.15 16 32 H 0.09 2.93 6.61 -2.39 -0.02 2.91 16 33 H 0.04 1.83 6.49 -2.39 -0.02 1.82 16 34 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.02 0.47 7.98 -2.38 -0.02 0.45 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.09 2.34 6.97 -2.39 -0.02 2.32 16 43 H 0.05 1.73 8.09 -2.39 -0.02 1.71 16 Total: -1.00 -69.30 314.09 1.08 -68.23 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 1.15 Total: 19.07 kcal Atomic # 6 Polarization: -44.05 SS G_CDS: 3.04 Total: -41.01 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -3.89 Total: -77.98 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -1.27 Total: -22.19 kcal Atomic # 14 Polarization: 51.82 SS G_CDS: 2.05 Total: 53.87 kcal Total: -69.30 1.08 -68.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686232015.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.479 kcal (2) G-P(sol) polarization free energy of solvation -69.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds