Wall clock time and date at job start Mon Mar 30 2020 07:56:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86798 * 119.99828 * 2 1
4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1
5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1
6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1
7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3
8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1
9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1
10 10 H 1.09005 * 109.48176 * 299.95535 * 9 7 2
11 11 C 1.53095 * 109.48535 * 179.90361 * 9 7 2
12 12 C 1.53182 * 109.23684 * 181.94922 * 11 9 7
13 13 C 1.53265 * 108.96761 * 57.46056 * 12 11 9
14 14 C 1.52570 * 109.23335 * 303.89951 * 13 12 11
15 15 C 1.54574 * 109.72478 * 294.60217 * 14 13 12
16 16 C 1.55299 * 104.77796 * 243.55017 * 15 14 13
17 17 N 1.47126 * 103.53488 * 23.95010 * 16 15 14
18 18 C 1.45646 * 116.55728 * 197.80471 * 17 16 15
19 19 C 1.53624 * 107.81388 * 182.76916 * 18 17 16
20 20 C 1.52825 * 110.70293 * 302.60848 * 19 18 17
21 21 C 1.53662 * 110.60419 * 53.74850 * 20 19 18
22 22 C 1.48805 * 103.78032 * 318.02782 * 17 16 15
23 23 H 1.09000 * 110.27144 * 285.88913 * 22 17 16
24 24 O 1.42290 * 110.80565 * 56.12299 * 14 13 12
25 25 H 0.97001 * 119.99934 * 179.97438 * 1 2 3
26 26 H 1.08995 * 109.50858 * 301.88112 * 11 9 7
27 27 H 1.09002 * 109.51125 * 62.02090 * 11 9 7
28 28 H 1.09004 * 109.55871 * 297.61223 * 12 11 9
29 29 H 1.09008 * 109.63582 * 177.35446 * 12 11 9
30 30 H 1.09000 * 109.51247 * 183.96986 * 13 12 11
31 31 H 1.09000 * 109.54952 * 63.85115 * 13 12 11
32 32 H 1.08999 * 110.38054 * 2.37621 * 15 14 13
33 33 H 1.09003 * 110.37859 * 124.73270 * 15 14 13
34 34 H 1.09001 * 110.60793 * 142.45966 * 16 15 14
35 35 H 1.08999 * 110.61531 * 265.43776 * 16 15 14
36 36 H 1.08995 * 109.79381 * 302.34554 * 18 17 16
37 37 H 1.09005 * 109.79370 * 63.13422 * 18 17 16
38 38 H 1.08999 * 109.22826 * 62.92102 * 19 18 17
39 39 H 1.09002 * 109.23606 * 182.33322 * 19 18 17
40 40 H 1.09001 * 109.24824 * 174.03652 * 20 19 18
41 41 H 1.08996 * 109.24752 * 293.49392 * 20 19 18
42 42 H 1.09003 * 109.84171 * 63.38021 * 21 20 19
43 43 H 1.09003 * 109.83816 * 184.27749 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 1.2840 2.7465 -0.0006
5 1 3.1029 1.6964 -1.2125
6 1 3.1028 1.6966 1.2125
7 6 2.0045 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0010
9 6 1.2511 -2.4991 0.0005
10 1 0.6246 -2.5572 0.8907
11 6 2.2457 -3.6630 -0.0012
12 6 1.4747 -4.9857 -0.0504
13 6 0.5808 -4.9953 -1.2954
14 6 -0.3323 -3.7733 -1.2680
15 6 -1.3082 -3.8780 -0.0739
16 6 -2.7176 -3.9636 -0.7206
17 7 -2.4469 -4.4889 -2.0680
18 6 -3.4996 -4.3132 -3.0590
19 6 -3.0389 -4.9898 -4.3590
20 6 -1.7096 -4.4027 -4.8320
21 6 -0.6601 -4.4687 -3.7115
22 6 -1.2335 -3.7445 -2.5014
23 1 -1.4918 -2.7164 -2.7554
24 8 0.4292 -2.5755 -1.1671
25 1 -0.4850 -0.8401 -0.0004
26 1 2.8937 -3.5866 -0.8743
27 1 2.8496 -3.6271 0.9055
28 1 0.8573 -5.0816 0.8427
29 1 2.1773 -5.8177 -0.0993
30 1 -0.0243 -5.9019 -1.3022
31 1 1.2020 -4.9656 -2.1906
32 1 -1.1021 -4.7769 0.5071
33 1 -1.2332 -2.9920 0.5565
34 1 -3.3549 -4.6495 -0.1623
35 1 -3.1739 -2.9755 -0.7786
36 1 -4.4198 -4.7790 -2.7066
37 1 -3.6677 -3.2505 -3.2346
38 1 -2.9172 -6.0587 -4.1837
39 1 -3.7933 -4.8362 -5.1307
40 1 -1.3526 -4.9687 -5.6924
41 1 -1.8592 -3.3630 -5.1228
42 1 -0.4551 -5.5086 -3.4573
43 1 0.2584 -3.9793 -4.0356
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000686232015.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:56:39
Heat of formation + Delta-G solvation = -78.706617 kcal
Electronic energy + Delta-G solvation = -22277.961717 eV
Core-core repulsion = 19320.989635 eV
Total energy + Delta-G solvation = -2956.972082 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 265.178 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-41.81754 -39.22653 -35.74886 -34.94492 -34.28928 -33.09951 -30.39376 -30.06104
-27.34057 -26.09295 -24.32067 -23.80880 -23.06258 -22.21798 -20.79686 -19.53083
-19.09764 -17.55574 -16.72311 -16.34095 -16.00232 -15.72197 -15.54737 -15.50237
-15.19687 -14.88031 -14.65082 -14.25369 -13.90561 -13.49800 -13.43587 -13.21865
-13.06144 -12.70667 -12.44615 -12.42502 -12.28746 -11.98465 -11.94617 -11.88366
-11.73745 -11.59528 -11.46424 -11.22178 -10.92686 -10.69913 -10.39164 -9.89992
-9.51837 -8.62592 -6.42821 1.50236 1.59044 1.78086 2.54565 2.76158
3.10551 3.43357 3.53728 3.75593 3.92741 3.96440 4.00396 4.09239
4.15250 4.18966 4.23840 4.31965 4.38881 4.43885 4.56883 4.61835
4.64932 4.70598 4.74392 4.79778 4.91917 4.92899 4.99662 5.00497
5.07334 5.09992 5.16364 5.18760 5.21703 5.28986 5.32045 5.45373
5.51495 5.79119 6.01365 6.14392 6.18339 6.57923 7.01655 7.50734
8.76338
Molecular weight = 265.18amu
Principal moments of inertia in cm(-1)
A = 0.022263 B = 0.006822 C = 0.006220
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1257.376000 B = 4103.188486 C = 4500.505148
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.918 5.918
2 C -0.019 4.019
3 Si 1.115 2.885
4 H -0.284 1.284
5 H -0.273 1.273
6 H -0.265 1.265
7 C -0.624 4.624
8 H 0.053 0.947
9 C 0.205 3.795
10 H -0.018 1.018
11 C -0.131 4.131
12 C -0.117 4.117
13 C -0.117 4.117
14 C 0.104 3.896
15 C -0.144 4.144
16 C 0.050 3.950
17 N -0.510 5.510
18 C 0.047 3.953
19 C -0.104 4.104
20 C -0.119 4.119
21 C -0.097 4.097
22 C 0.083 3.917
23 H 0.016 0.984
24 O -0.395 6.395
25 H 0.265 0.735
26 H 0.049 0.951
27 H 0.058 0.942
28 H 0.058 0.942
29 H 0.084 0.916
30 H 0.090 0.910
31 H 0.064 0.936
32 H 0.086 0.914
33 H 0.039 0.961
34 H 0.104 0.896
35 H 0.020 0.980
36 H 0.094 0.906
37 H 0.016 0.984
38 H 0.079 0.921
39 H 0.085 0.915
40 H 0.086 0.914
41 H 0.044 0.956
42 H 0.087 0.913
43 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.851 -12.687 -6.158 14.914
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.554 5.554
2 C -0.221 4.221
3 Si 0.936 3.064
4 H -0.209 1.209
5 H -0.199 1.199
6 H -0.190 1.190
7 C -0.661 4.661
8 H 0.072 0.928
9 C 0.149 3.851
10 H 0.000 1.000
11 C -0.169 4.169
12 C -0.154 4.154
13 C -0.155 4.155
14 C 0.064 3.936
15 C -0.182 4.182
16 C -0.078 4.078
17 N -0.235 5.235
18 C -0.081 4.081
19 C -0.142 4.142
20 C -0.157 4.157
21 C -0.135 4.135
22 C -0.025 4.025
23 H 0.034 0.966
24 O -0.315 6.315
25 H 0.076 0.924
26 H 0.067 0.933
27 H 0.077 0.923
28 H 0.077 0.923
29 H 0.103 0.897
30 H 0.109 0.891
31 H 0.083 0.917
32 H 0.105 0.895
33 H 0.058 0.942
34 H 0.122 0.878
35 H 0.039 0.961
36 H 0.112 0.888
37 H 0.034 0.966
38 H 0.098 0.902
39 H 0.104 0.896
40 H 0.104 0.896
41 H 0.063 0.937
42 H 0.106 0.894
43 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -5.022 -11.485 -6.262 14.012
hybrid contribution -0.022 -0.349 0.456 0.574
sum -5.044 -11.833 -5.806 14.113
Atomic orbital electron populations
1.70779 1.07946 1.31000 1.45687 1.27340 0.96639 1.06490 0.91610
0.82998 0.74217 0.71243 0.77970 1.20907 1.19890 1.18971 1.22350
0.94165 0.92622 1.56922 0.92836 1.19710 0.87626 0.94204 0.83511
1.00038 1.21999 0.98570 0.95566 1.00803 1.21669 0.98704 0.96909
0.98106 1.21924 0.97746 0.97544 0.98242 1.21647 0.90964 0.87080
0.93958 1.23161 0.95555 1.01255 0.98276 1.22790 0.96527 0.97836
0.90654 1.63979 1.05107 1.52705 1.01711 1.22216 0.94677 0.98302
0.92916 1.21551 0.96667 1.00792 0.95188 1.21620 0.95369 1.00750
0.97945 1.21481 0.97779 1.01020 0.93216 1.22069 0.91295 0.94569
0.94570 0.96605 1.88141 1.59237 1.37878 1.46272 0.92388 0.93250
0.92299 0.92327 0.89697 0.89128 0.91732 0.89517 0.94220 0.87763
0.96121 0.88790 0.96556 0.90203 0.89629 0.89587 0.93749 0.89422
0.92838
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -58.54 13.53 21.45 0.29 -58.25 16
2 C -0.02 -1.14 5.40 84.65 0.46 -0.68 16
3 Si 1.11 51.82 29.90 68.60 2.05 53.87 16
4 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16
5 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16
6 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16
7 C -0.62 -36.90 8.80 25.60 0.23 -36.67 16
8 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16
9 C 0.20 10.91 1.80 29.88 0.05 10.97 16
10 H -0.02 -1.02 6.43 -2.38 -0.02 -1.03 16
11 C -0.13 -5.69 5.34 30.69 0.16 -5.53 16
12 C -0.12 -3.97 5.79 30.74 0.18 -3.80 16
13 C -0.12 -3.95 3.58 30.54 0.11 -3.84 16
14 C 0.10 4.22 0.96 -10.47 -0.01 4.21 16
15 C -0.14 -5.54 5.36 31.92 0.17 -5.37 16
16 C 0.05 1.64 6.72 87.05 0.59 2.22 16
17 N -0.51 -15.54 4.84 -864.64 -4.18 -19.73 16
18 C 0.05 1.19 5.87 86.75 0.51 1.70 16
19 C -0.10 -2.14 6.06 30.75 0.19 -1.96 16
20 C -0.12 -2.83 5.95 30.76 0.18 -2.65 16
21 C -0.10 -2.88 4.42 30.56 0.14 -2.74 16
22 C 0.08 3.05 2.10 44.22 0.09 3.14 16
23 H 0.02 0.71 7.94 -2.39 -0.02 0.69 16
24 O -0.40 -20.91 8.54 -148.98 -1.27 -22.19 16
25 H 0.27 17.26 6.27 -92.71 -0.58 16.68 16
26 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16
27 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16
28 H 0.06 1.96 6.84 -2.39 -0.02 1.95 16
29 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16
30 H 0.09 2.63 7.97 -2.39 -0.02 2.61 16
31 H 0.06 2.17 7.06 -2.39 -0.02 2.15 16
32 H 0.09 2.93 6.61 -2.39 -0.02 2.91 16
33 H 0.04 1.83 6.49 -2.39 -0.02 1.82 16
34 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16
35 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16
36 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16
37 H 0.02 0.47 7.98 -2.38 -0.02 0.45 16
38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16
39 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16
40 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16
41 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16
42 H 0.09 2.34 6.97 -2.39 -0.02 2.32 16
43 H 0.05 1.73 8.09 -2.39 -0.02 1.71 16
Total: -1.00 -69.30 314.09 1.08 -68.23
By element:
Atomic # 1 Polarization: 17.92 SS G_CDS: 1.15 Total: 19.07 kcal
Atomic # 6 Polarization: -44.05 SS G_CDS: 3.04 Total: -41.01 kcal
Atomic # 7 Polarization: -74.08 SS G_CDS: -3.89 Total: -77.98 kcal
Atomic # 8 Polarization: -20.91 SS G_CDS: -1.27 Total: -22.19 kcal
Atomic # 14 Polarization: 51.82 SS G_CDS: 2.05 Total: 53.87 kcal
Total: -69.30 1.08 -68.23 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000686232015.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.479 kcal
(2) G-P(sol) polarization free energy of solvation -69.303 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.782 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.075 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.227 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.707 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds