Wall clock time and date at job start Mon Mar 30 2020 07:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 120.00082 * 2 1 4 4 H 1.48497 * 109.46936 * 269.99950 * 3 2 1 5 5 H 1.48493 * 109.47129 * 29.99823 * 3 2 1 6 6 H 1.48501 * 109.47308 * 149.99951 * 3 2 1 7 7 C 1.37882 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99589 * 180.02562 * 7 2 1 9 9 C 1.50790 * 120.00133 * 0.02562 * 7 2 1 10 10 H 1.08970 * 109.27297 * 60.26615 * 9 7 2 11 11 C 1.53074 * 109.35975 * 180.17260 * 9 7 2 12 12 C 1.53071 * 109.20974 * 177.35074 * 11 9 7 13 13 C 1.52923 * 109.48349 * 303.95565 * 12 11 9 14 14 C 1.53228 * 110.10631 * 55.75487 * 13 12 11 15 15 C 1.52448 * 109.73690 * 63.57033 * 14 13 12 16 16 C 1.52541 * 111.78551 * 72.30102 * 15 14 13 17 17 N 1.46074 * 111.61108 * 50.47080 * 16 15 14 18 18 C 1.45654 * 114.14775 * 68.66163 * 17 16 15 19 19 C 1.52089 * 113.05769 * 288.14561 * 18 17 16 20 20 C 1.52048 * 113.33337 * 315.98896 * 19 18 17 21 21 C 1.52276 * 112.97276 * 42.63309 * 20 19 18 22 22 H 1.10002 * 108.81330 * 189.78497 * 21 20 19 23 23 C 1.46572 * 111.60874 * 300.24621 * 17 16 15 24 24 O 1.42708 * 109.44589 * 300.00091 * 9 7 2 25 25 H 0.97000 * 119.99351 * 359.97438 * 1 2 3 26 26 H 1.09017 * 109.51864 * 57.33509 * 11 9 7 27 27 H 1.09032 * 109.48250 * 297.29491 * 11 9 7 28 28 H 1.09306 * 109.20412 * 184.31648 * 12 11 9 29 29 H 1.08893 * 109.80851 * 64.91184 * 12 11 9 30 30 H 1.09129 * 109.52559 * 295.63300 * 13 12 11 31 31 H 1.09092 * 109.42891 * 176.02272 * 13 12 11 32 32 H 1.08529 * 110.85740 * 196.51127 * 15 14 13 33 33 H 1.10221 * 108.54943 * 313.28698 * 15 14 13 34 34 H 1.09501 * 109.11657 * 171.36839 * 16 15 14 35 35 H 1.09429 * 109.26350 * 289.32321 * 16 15 14 36 36 H 1.09785 * 109.15750 * 49.68317 * 18 17 16 37 37 H 1.09790 * 109.15299 * 166.58561 * 18 17 16 38 38 H 1.10779 * 107.70856 * 196.84304 * 19 18 17 39 39 H 1.08779 * 110.90268 * 81.54480 * 19 18 17 40 40 H 1.09826 * 109.13841 * 281.17722 * 20 19 18 41 41 H 1.09765 * 109.20019 * 164.31807 * 20 19 18 42 42 H 1.08973 * 109.74312 * 183.97474 * 23 17 16 43 43 H 1.08792 * 109.99936 * 304.75191 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2506 -2.5000 0.0005 10 1 0.6293 -2.5566 -0.8929 11 6 2.2475 -3.6616 0.0055 12 6 1.4797 -4.9840 0.0723 13 6 0.5661 -4.9820 1.2986 14 6 -0.3631 -3.7642 1.2612 15 6 -1.2829 -3.8555 0.0489 16 6 -2.3485 -4.9325 0.2265 17 7 -3.0452 -4.7946 1.5030 18 6 -3.8936 -3.6142 1.5943 19 6 -3.1031 -2.3200 1.7097 20 6 -1.9409 -2.4092 2.6861 21 6 -1.1608 -3.7112 2.5640 22 1 -0.4564 -3.7830 3.4059 23 6 -2.1215 -4.8993 2.6362 24 8 0.4299 -2.5747 1.1656 25 1 -0.4849 0.8401 0.0004 26 1 2.9030 -3.5753 0.8724 27 1 2.8448 -3.6321 -0.9062 28 1 2.1916 -5.8095 0.1535 29 1 0.8893 -5.1141 -0.8334 30 1 1.1724 -4.9436 2.2052 31 1 -0.0324 -5.8941 1.3069 32 1 -1.7380 -2.8936 -0.1642 33 1 -0.6760 -4.1191 -0.8326 34 1 -3.0731 -4.8584 -0.5911 35 1 -1.8772 -5.9187 0.1740 36 1 -4.5365 -3.5630 0.7058 37 1 -4.5525 -3.7108 2.4672 38 1 -3.7935 -1.5350 2.0762 39 1 -2.7648 -1.9833 0.7322 40 1 -2.3239 -2.3161 3.7112 41 1 -1.2611 -1.5644 2.5162 42 1 -2.6802 -4.8631 3.5711 43 1 -1.5649 -5.8322 2.5776 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686234882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:53 Heat of formation + Delta-G solvation = -56.063389 kcal Electronic energy + Delta-G solvation = -22803.200289 eV Core-core repulsion = 19847.210091 eV Total energy + Delta-G solvation = -2955.990198 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.51031 -37.40633 -33.16008 -32.96555 -32.02592 -31.57831 -30.13024 -28.32890 -25.59760 -24.31533 -23.37120 -22.10251 -21.57857 -20.95724 -18.78432 -17.38279 -16.52778 -15.82376 -15.12487 -14.71589 -14.47378 -14.38147 -14.08315 -13.80686 -13.37577 -13.19778 -12.65738 -12.34066 -12.08544 -11.97448 -11.86529 -11.66158 -11.41868 -11.07889 -10.94837 -10.82450 -10.76485 -10.47778 -10.41996 -10.30506 -10.13025 -9.92076 -9.79814 -9.45725 -9.12777 -8.75761 -8.40040 -7.75390 -7.66844 -5.99765 -4.10410 3.29793 3.37005 3.40530 4.33571 4.42525 4.87420 5.10755 5.23133 5.36931 5.42677 5.51990 5.55239 5.62266 5.66403 5.73309 5.80274 5.84614 5.88130 5.95253 6.00177 6.09701 6.18484 6.22226 6.27004 6.35929 6.37214 6.44234 6.55903 6.60266 6.67888 6.75041 6.85547 6.90847 6.93794 7.02130 7.16002 7.25102 7.48381 7.57291 7.62749 7.91572 8.33244 8.82405 9.21218 9.59013 11.07083 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022309 B = 0.008309 C = 0.006802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.792617 B = 3368.971029 C = 4115.466510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.221 3.779 10 H 0.015 0.985 11 C -0.145 4.145 12 C -0.118 4.118 13 C -0.138 4.138 14 C 0.132 3.868 15 C -0.174 4.174 16 C 0.071 3.929 17 N -0.549 5.549 18 C 0.072 3.928 19 C -0.147 4.147 20 C -0.098 4.098 21 C -0.101 4.101 22 H 0.065 0.935 23 C 0.069 3.931 24 O -0.344 6.344 25 H 0.258 0.742 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.046 0.954 39 H 0.077 0.923 40 H 0.039 0.961 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.471 -8.956 2.809 10.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.079 0.921 9 C 0.165 3.835 10 H 0.033 0.967 11 C -0.183 4.183 12 C -0.156 4.156 13 C -0.176 4.176 14 C 0.091 3.909 15 C -0.213 4.213 16 C -0.057 4.057 17 N -0.270 5.270 18 C -0.057 4.057 19 C -0.186 4.186 20 C -0.135 4.135 21 C -0.121 4.121 22 H 0.084 0.916 23 C -0.059 4.059 24 O -0.263 6.263 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.058 0.942 41 H 0.105 0.895 42 H 0.089 0.911 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.951 -9.069 2.966 11.245 hybrid contribution 1.112 1.456 -0.268 1.852 sum -4.839 -7.612 2.698 9.415 Atomic orbital electron populations 1.70030 1.05804 1.26155 1.47311 1.25012 0.94778 0.98933 0.93833 0.86688 0.80103 0.83679 0.78014 1.20684 1.21182 1.19872 1.21040 0.92595 0.89887 1.52873 0.92120 1.19586 0.86853 0.91667 0.85373 0.96733 1.22246 0.99684 0.95543 1.00783 1.21558 0.98110 0.98221 0.97689 1.22185 0.98294 0.98597 0.98520 1.20801 0.90018 0.87499 0.92594 1.22658 0.98369 1.00934 0.99343 1.21809 0.95070 0.98299 0.90533 1.60360 1.24963 1.38838 1.02875 1.21660 0.94649 0.87879 1.01485 1.21878 0.97526 0.97315 1.01847 1.21030 0.96886 0.98744 0.96863 1.21468 0.96933 0.96131 0.97577 0.91614 1.21968 0.93094 0.97350 0.93532 1.88364 1.56750 1.35833 1.45393 0.93226 0.92743 0.92814 0.93617 0.92619 0.92273 0.92707 0.89723 0.92324 0.91795 0.91637 0.91870 0.91953 0.93473 0.90470 0.94215 0.89476 0.91142 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.31 12.84 55.43 0.71 -23.60 16 2 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.53 -14.66 8.79 -34.39 -0.30 -14.97 16 8 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 9 C 0.22 5.56 2.18 -27.80 -0.06 5.50 16 10 H 0.02 0.41 6.69 -51.95 -0.35 0.06 16 11 C -0.14 -3.09 5.36 -26.66 -0.14 -3.23 16 12 C -0.12 -2.11 5.65 -26.73 -0.15 -2.26 16 13 C -0.14 -2.42 4.43 -26.65 -0.12 -2.53 16 14 C 0.13 2.56 0.51 -90.86 -0.05 2.51 16 15 C -0.17 -3.25 3.31 -27.25 -0.09 -3.34 16 16 C 0.07 1.09 5.48 -4.51 -0.02 1.07 16 17 N -0.55 -8.21 4.80 -236.50 -1.14 -9.35 16 18 C 0.07 1.05 5.74 -4.96 -0.03 1.02 16 19 C -0.15 -2.50 5.04 -27.68 -0.14 -2.64 16 20 C -0.10 -1.79 5.26 -27.59 -0.14 -1.94 16 21 C -0.10 -1.77 2.13 -91.09 -0.19 -1.97 16 22 H 0.07 1.16 8.10 -51.36 -0.42 0.75 16 23 C 0.07 1.01 5.47 -4.02 -0.02 0.99 16 24 O -0.34 -8.46 8.11 -35.23 -0.29 -8.75 16 25 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 26 H 0.05 1.19 8.14 -51.92 -0.42 0.76 16 27 H 0.05 1.10 8.14 -51.91 -0.42 0.68 16 28 H 0.05 0.72 8.17 -51.76 -0.42 0.30 16 29 H 0.06 0.97 6.58 -51.99 -0.34 0.63 16 30 H 0.06 1.05 8.05 -51.86 -0.42 0.63 16 31 H 0.05 0.84 5.89 -51.88 -0.31 0.54 16 32 H 0.08 1.82 5.48 -52.19 -0.29 1.54 16 33 H 0.06 1.13 5.29 -51.23 -0.27 0.86 16 34 H 0.06 0.92 8.12 -51.65 -0.42 0.51 16 35 H 0.07 0.95 7.45 -51.69 -0.39 0.56 16 36 H 0.06 0.87 8.13 -51.48 -0.42 0.45 16 37 H 0.06 0.83 8.21 -51.48 -0.42 0.41 16 38 H 0.05 0.74 8.29 -50.91 -0.42 0.32 16 39 H 0.08 1.54 5.81 -52.05 -0.30 1.24 16 40 H 0.04 0.65 8.21 -51.46 -0.42 0.23 16 41 H 0.09 1.98 7.34 -51.49 -0.38 1.60 16 42 H 0.07 0.95 8.14 -51.94 -0.42 0.53 16 43 H 0.07 1.00 6.71 -52.05 -0.35 0.65 16 LS Contribution 304.35 15.07 4.59 4.59 Total: -1.00 -28.28 304.35 -9.84 -38.13 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.14 Total: 2.38 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -1.56 Total: -19.66 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: -0.42 Total: -32.95 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.29 Total: -8.75 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.28 -9.84 -38.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686234882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.936 kcal (2) G-P(sol) polarization free energy of solvation -28.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds