Wall clock time and date at job start Mon Mar 30 2020 07:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 120.00082 * 2 1 4 4 H 1.48497 * 109.46936 * 269.99950 * 3 2 1 5 5 H 1.48493 * 109.47129 * 29.99823 * 3 2 1 6 6 H 1.48501 * 109.47308 * 149.99951 * 3 2 1 7 7 C 1.37882 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99589 * 180.02562 * 7 2 1 9 9 C 1.50790 * 120.00133 * 0.02562 * 7 2 1 10 10 H 1.08970 * 109.27297 * 60.26615 * 9 7 2 11 11 C 1.53074 * 109.35975 * 180.17260 * 9 7 2 12 12 C 1.53071 * 109.20974 * 177.35074 * 11 9 7 13 13 C 1.52923 * 109.48349 * 303.95565 * 12 11 9 14 14 C 1.53228 * 110.10631 * 55.75487 * 13 12 11 15 15 C 1.52448 * 109.73690 * 63.57033 * 14 13 12 16 16 C 1.52541 * 111.78551 * 72.30102 * 15 14 13 17 17 N 1.46074 * 111.61108 * 50.47080 * 16 15 14 18 18 C 1.45654 * 114.14775 * 68.66163 * 17 16 15 19 19 C 1.52089 * 113.05769 * 288.14561 * 18 17 16 20 20 C 1.52048 * 113.33337 * 315.98896 * 19 18 17 21 21 C 1.52276 * 112.97276 * 42.63309 * 20 19 18 22 22 H 1.10002 * 108.81330 * 189.78497 * 21 20 19 23 23 C 1.46572 * 111.60874 * 300.24621 * 17 16 15 24 24 O 1.42708 * 109.44589 * 300.00091 * 9 7 2 25 25 H 0.97000 * 119.99351 * 359.97438 * 1 2 3 26 26 H 1.09017 * 109.51864 * 57.33509 * 11 9 7 27 27 H 1.09032 * 109.48250 * 297.29491 * 11 9 7 28 28 H 1.09306 * 109.20412 * 184.31648 * 12 11 9 29 29 H 1.08893 * 109.80851 * 64.91184 * 12 11 9 30 30 H 1.09129 * 109.52559 * 295.63300 * 13 12 11 31 31 H 1.09092 * 109.42891 * 176.02272 * 13 12 11 32 32 H 1.08529 * 110.85740 * 196.51127 * 15 14 13 33 33 H 1.10221 * 108.54943 * 313.28698 * 15 14 13 34 34 H 1.09501 * 109.11657 * 171.36839 * 16 15 14 35 35 H 1.09429 * 109.26350 * 289.32321 * 16 15 14 36 36 H 1.09785 * 109.15750 * 49.68317 * 18 17 16 37 37 H 1.09790 * 109.15299 * 166.58561 * 18 17 16 38 38 H 1.10779 * 107.70856 * 196.84304 * 19 18 17 39 39 H 1.08779 * 110.90268 * 81.54480 * 19 18 17 40 40 H 1.09826 * 109.13841 * 281.17722 * 20 19 18 41 41 H 1.09765 * 109.20019 * 164.31807 * 20 19 18 42 42 H 1.08973 * 109.74312 * 183.97474 * 23 17 16 43 43 H 1.08792 * 109.99936 * 304.75191 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2506 -2.5000 0.0005 10 1 0.6293 -2.5566 -0.8929 11 6 2.2475 -3.6616 0.0055 12 6 1.4797 -4.9840 0.0723 13 6 0.5661 -4.9820 1.2986 14 6 -0.3631 -3.7642 1.2612 15 6 -1.2829 -3.8555 0.0489 16 6 -2.3485 -4.9325 0.2265 17 7 -3.0452 -4.7946 1.5030 18 6 -3.8936 -3.6142 1.5943 19 6 -3.1031 -2.3200 1.7097 20 6 -1.9409 -2.4092 2.6861 21 6 -1.1608 -3.7112 2.5640 22 1 -0.4564 -3.7830 3.4059 23 6 -2.1215 -4.8993 2.6362 24 8 0.4299 -2.5747 1.1656 25 1 -0.4849 0.8401 0.0004 26 1 2.9030 -3.5753 0.8724 27 1 2.8448 -3.6321 -0.9062 28 1 2.1916 -5.8095 0.1535 29 1 0.8893 -5.1141 -0.8334 30 1 1.1724 -4.9436 2.2052 31 1 -0.0324 -5.8941 1.3069 32 1 -1.7380 -2.8936 -0.1642 33 1 -0.6760 -4.1191 -0.8326 34 1 -3.0731 -4.8584 -0.5911 35 1 -1.8772 -5.9187 0.1740 36 1 -4.5365 -3.5630 0.7058 37 1 -4.5525 -3.7108 2.4672 38 1 -3.7935 -1.5350 2.0762 39 1 -2.7648 -1.9833 0.7322 40 1 -2.3239 -2.3161 3.7112 41 1 -1.2611 -1.5644 2.5162 42 1 -2.6802 -4.8631 3.5711 43 1 -1.5649 -5.8322 2.5776 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686234882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:52 Heat of formation + Delta-G solvation = -73.578821 kcal Electronic energy + Delta-G solvation = -22803.959815 eV Core-core repulsion = 19847.210091 eV Total energy + Delta-G solvation = -2956.749724 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.93231 -38.98767 -35.03182 -34.48791 -33.56679 -33.28276 -31.49760 -29.98318 -27.39007 -25.85244 -24.72106 -23.78137 -22.93772 -22.51781 -20.30004 -18.89114 -18.57104 -17.32105 -16.77744 -16.33154 -16.13111 -15.85122 -15.47385 -15.31131 -14.87614 -14.69330 -14.47417 -13.96753 -13.53629 -13.41274 -13.31781 -12.97487 -12.86895 -12.81264 -12.77035 -12.41342 -12.30087 -12.24339 -12.06974 -11.84050 -11.63493 -11.61873 -11.24532 -10.97138 -10.84588 -10.70681 -10.23314 -9.52836 -8.97455 -8.12134 -6.30990 1.36184 1.37603 1.47563 2.38842 3.01397 3.15388 3.56840 3.74168 3.92046 4.03374 4.07662 4.14606 4.22429 4.29707 4.36235 4.40054 4.42363 4.50690 4.56926 4.66925 4.68635 4.80442 4.84885 4.88954 4.94390 5.00676 5.03841 5.10647 5.13313 5.16925 5.18902 5.29223 5.30011 5.44521 5.49120 5.60880 5.61132 5.70884 5.84545 6.26679 6.28397 6.38003 6.70551 7.34292 7.46539 8.93338 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022309 B = 0.008309 C = 0.006802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.792617 B = 3368.971029 C = 4115.466510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.031 3.969 3 Si 0.951 3.049 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.557 4.557 8 H 0.056 0.944 9 C 0.225 3.775 10 H -0.019 1.019 11 C -0.140 4.140 12 C -0.113 4.113 13 C -0.133 4.133 14 C 0.119 3.881 15 C -0.162 4.162 16 C 0.076 3.924 17 N -0.540 5.540 18 C 0.074 3.926 19 C -0.140 4.140 20 C -0.093 4.093 21 C -0.103 4.103 22 H 0.062 0.938 23 C 0.076 3.924 24 O -0.375 6.375 25 H 0.257 0.743 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.037 0.963 40 H 0.061 0.939 41 H 0.029 0.971 42 H 0.093 0.907 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.238 -11.230 3.758 13.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.172 4.172 3 Si 0.777 3.223 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.594 4.594 8 H 0.074 0.926 9 C 0.169 3.831 10 H -0.001 1.001 11 C -0.178 4.178 12 C -0.151 4.151 13 C -0.170 4.170 14 C 0.079 3.921 15 C -0.202 4.202 16 C -0.052 4.052 17 N -0.261 5.261 18 C -0.054 4.054 19 C -0.180 4.180 20 C -0.131 4.131 21 C -0.123 4.123 22 H 0.080 0.920 23 C -0.052 4.052 24 O -0.295 6.295 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.111 0.889 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.716 -11.355 3.913 13.761 hybrid contribution 1.342 2.205 -0.561 2.641 sum -5.374 -9.150 3.352 11.129 Atomic orbital electron populations 1.70176 1.07082 1.26704 1.47970 1.25787 0.95632 1.02266 0.93489 0.85684 0.78799 0.79489 0.78363 1.19672 1.20930 1.19444 1.21459 0.92756 0.91834 1.53344 0.92602 1.19317 0.87071 0.92307 0.84454 1.00104 1.22121 0.98954 0.96323 1.00408 1.21528 0.98520 0.96837 0.98169 1.22142 0.98074 0.98640 0.98157 1.21171 0.90315 0.86685 0.93902 1.22539 0.98891 1.00241 0.98490 1.21825 0.94332 0.97664 0.91373 1.60453 1.24594 1.38384 1.02668 1.21700 0.94384 0.86088 1.03221 1.21809 0.97383 0.99481 0.99278 1.20946 0.96403 0.97407 0.98342 1.21546 0.97347 0.97136 0.96244 0.91967 1.22051 0.92512 0.96262 0.94366 1.88261 1.57642 1.39048 1.44562 0.93421 0.93566 0.92697 0.90478 0.92275 0.92423 0.89382 0.93675 0.93758 0.90782 0.89455 0.90906 0.89341 0.92704 0.94445 0.92073 0.95158 0.88893 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.85 12.84 21.45 0.28 -52.58 16 2 C 0.03 1.81 5.40 84.65 0.46 2.27 16 3 Si 0.95 45.10 29.54 68.60 2.03 47.13 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.56 -32.40 8.79 25.63 0.23 -32.17 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.22 11.85 2.18 29.90 0.07 11.92 16 10 H -0.02 -1.07 6.69 -2.40 -0.02 -1.09 16 11 C -0.14 -6.05 5.36 30.64 0.16 -5.89 16 12 C -0.11 -3.85 5.65 30.59 0.17 -3.68 16 13 C -0.13 -4.35 4.43 30.64 0.14 -4.21 16 14 C 0.12 4.63 0.51 -10.95 -0.01 4.63 16 15 C -0.16 -6.13 3.31 30.26 0.10 -6.03 16 16 C 0.08 2.16 5.48 86.31 0.47 2.63 16 17 N -0.54 -14.31 4.80 -902.15 -4.33 -18.64 16 18 C 0.07 1.99 5.74 86.24 0.50 2.48 16 19 C -0.14 -4.82 5.04 29.98 0.15 -4.67 16 20 C -0.09 -3.47 5.26 30.04 0.16 -3.32 16 21 C -0.10 -3.50 2.13 -11.10 -0.02 -3.52 16 22 H 0.06 2.14 8.10 -1.85 -0.01 2.12 16 23 C 0.08 1.94 5.47 86.35 0.47 2.41 16 24 O -0.38 -19.31 8.11 -148.98 -1.21 -20.52 16 25 H 0.26 14.69 8.31 -92.71 -0.77 13.91 16 26 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 27 H 0.05 2.29 8.14 -2.37 -0.02 2.27 16 28 H 0.08 2.17 8.17 -2.22 -0.02 2.15 16 29 H 0.06 1.98 6.58 -2.44 -0.02 1.96 16 30 H 0.06 1.92 8.05 -2.32 -0.02 1.90 16 31 H 0.09 2.32 5.89 -2.34 -0.01 2.31 16 32 H 0.04 2.06 5.48 -2.63 -0.01 2.05 16 33 H 0.04 1.75 5.29 -1.73 -0.01 1.74 16 34 H 0.07 1.97 8.12 -2.12 -0.02 1.95 16 35 H 0.09 2.15 7.45 -2.16 -0.02 2.13 16 36 H 0.07 1.84 8.13 -1.97 -0.02 1.82 16 37 H 0.09 1.98 8.21 -1.97 -0.02 1.97 16 38 H 0.05 1.74 8.29 -1.43 -0.01 1.73 16 39 H 0.04 1.58 5.81 -2.50 -0.01 1.57 16 40 H 0.06 1.97 8.21 -1.95 -0.02 1.95 16 41 H 0.03 1.45 7.34 -1.98 -0.01 1.43 16 42 H 0.09 2.04 8.14 -2.40 -0.02 2.02 16 43 H 0.09 2.05 6.71 -2.50 -0.02 2.03 16 Total: -1.00 -65.41 304.35 0.81 -64.60 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 1.01 Total: 17.16 kcal Atomic # 6 Polarization: -40.19 SS G_CDS: 3.04 Total: -37.14 kcal Atomic # 7 Polarization: -67.16 SS G_CDS: -4.06 Total: -71.22 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -1.21 Total: -20.52 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -65.41 0.81 -64.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686234882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.983 kcal (2) G-P(sol) polarization free energy of solvation -65.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds