Wall clock time and date at job start Mon Mar 30 2020 07:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00258 * 2 1 4 4 H 1.48499 * 109.47508 * 264.83466 * 3 2 1 5 5 H 1.48503 * 109.46905 * 24.83313 * 3 2 1 6 6 H 1.48500 * 109.47409 * 144.83006 * 3 2 1 7 7 C 1.37884 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99609 * 6.41555 * 7 2 1 9 9 C 1.50966 * 120.00274 * 186.41414 * 7 2 1 10 10 H 1.08944 * 108.91576 * 34.63208 * 9 7 2 11 11 C 1.53090 * 109.14101 * 275.07517 * 9 7 2 12 12 C 1.53104 * 109.15352 * 183.76047 * 11 9 7 13 13 C 1.53107 * 109.12669 * 57.20849 * 12 11 9 14 14 C 1.53248 * 109.48311 * 302.38051 * 13 12 11 15 15 C 1.52375 * 109.48515 * 296.64420 * 14 13 12 16 16 C 1.52371 * 112.02919 * 190.61699 * 15 14 13 17 17 N 1.45863 * 112.23714 * 48.67696 * 16 15 14 18 18 C 1.45858 * 113.86744 * 70.76760 * 17 16 15 19 19 C 1.52176 * 112.55176 * 289.34482 * 18 17 16 20 20 C 1.52067 * 113.02721 * 314.65938 * 19 18 17 21 21 C 1.52046 * 113.19972 * 43.06651 * 20 19 18 22 22 H 1.10066 * 108.87919 * 190.42718 * 21 20 19 23 23 C 1.46530 * 112.18663 * 302.47054 * 17 16 15 24 24 O 1.42445 * 109.34231 * 155.04105 * 9 7 2 25 25 H 0.97000 * 119.99889 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.50847 * 63.82972 * 11 9 7 27 27 H 1.09004 * 109.52680 * 303.72855 * 11 9 7 28 28 H 1.09096 * 109.46898 * 177.01134 * 12 11 9 29 29 H 1.08961 * 109.66507 * 296.97758 * 12 11 9 30 30 H 1.08946 * 109.64419 * 62.42869 * 13 12 11 31 31 H 1.09028 * 109.24218 * 182.55239 * 13 12 11 32 32 H 1.08732 * 110.59975 * 314.67147 * 15 14 13 33 33 H 1.10185 * 108.72499 * 71.06047 * 15 14 13 34 34 H 1.09617 * 109.09543 * 287.42228 * 16 15 14 35 35 H 1.09604 * 109.11142 * 169.99523 * 16 15 14 36 36 H 1.09686 * 109.18738 * 50.68108 * 18 17 16 37 37 H 1.09672 * 109.19529 * 167.97148 * 18 17 16 38 38 H 1.08719 * 110.86119 * 80.08065 * 19 18 17 39 39 H 1.10719 * 107.73252 * 195.59122 * 19 18 17 40 40 H 1.10038 * 108.82869 * 281.87912 * 20 19 18 41 41 H 1.09656 * 109.33629 * 165.55052 * 20 19 18 42 42 H 1.08838 * 109.95079 * 304.48923 * 23 17 16 43 43 H 1.08875 * 109.90132 * 183.39995 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6059 1.9834 -1.3943 5 1 1.3963 2.6817 0.5880 6 1 3.4878 1.4741 0.8064 7 6 2.0046 -1.1941 0.0005 8 1 1.4696 -2.1265 -0.1036 9 6 3.5071 -1.1981 0.1466 10 1 3.7997 -0.3848 0.8098 11 6 4.1458 -0.9919 -1.2294 12 6 5.6679 -1.0897 -1.0964 13 6 6.0324 -2.4477 -0.4906 14 6 5.3370 -2.6054 0.8659 15 6 5.8540 -1.5435 1.8287 16 6 5.4013 -1.8012 3.2606 17 7 5.6369 -3.1799 3.6744 18 6 7.0455 -3.5060 3.8660 19 6 7.8140 -3.5679 2.5540 20 6 7.0784 -4.3396 1.4697 21 6 5.5950 -4.0128 1.4034 22 1 5.1008 -4.7345 0.7353 23 6 4.9690 -4.1433 2.7952 24 8 3.9252 -2.4475 0.6883 25 1 -0.4850 0.8401 -0.0004 26 1 3.8755 -0.0078 -1.6124 27 1 3.7890 -1.7601 -1.9155 28 1 6.1257 -0.9964 -2.0823 29 1 6.0319 -0.2898 -0.4523 30 1 5.7089 -3.2454 -1.1584 31 1 7.1126 -2.5015 -0.3530 32 1 6.9377 -1.4731 1.7745 33 1 5.4639 -0.5619 1.5153 34 1 4.3317 -1.5760 3.3445 35 1 5.9384 -1.1237 3.9342 36 1 7.5050 -2.7516 4.5163 37 1 7.1255 -4.4738 4.3757 38 1 8.0779 -2.5701 2.2124 39 1 8.7727 -4.0863 2.7489 40 1 7.1973 -5.4173 1.6579 41 1 7.5440 -4.1340 0.4984 42 1 3.9047 -3.9220 2.7421 43 1 5.1189 -5.1540 3.1712 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686234883.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:57 Heat of formation + Delta-G solvation = -52.831274 kcal Electronic energy + Delta-G solvation = -22590.878369 eV Core-core repulsion = 19635.028326 eV Total energy + Delta-G solvation = -2955.850043 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.79769 -37.76828 -33.53957 -33.08276 -32.62855 -31.77314 -30.41953 -28.80627 -25.77093 -24.83720 -23.45191 -22.20909 -21.52848 -21.20731 -19.06051 -18.15803 -16.80318 -15.71307 -15.55806 -15.38500 -14.71751 -14.58399 -14.14239 -13.90010 -13.61907 -13.38739 -12.88720 -12.73301 -12.56475 -12.19768 -12.15886 -11.78022 -11.69825 -11.58108 -11.25503 -11.09499 -10.97804 -10.75215 -10.73804 -10.36395 -10.30244 -10.06007 -9.85681 -9.73448 -9.52192 -8.97510 -8.55356 -8.26852 -7.77038 -6.14071 -4.12861 3.21652 3.28975 3.30608 4.23501 4.32961 4.41777 4.76540 4.94412 5.04606 5.10864 5.15122 5.25113 5.30233 5.41558 5.46673 5.50757 5.58931 5.68171 5.70425 5.78585 5.90365 5.92118 5.96782 6.00995 6.10644 6.16254 6.21195 6.22509 6.29361 6.36189 6.40853 6.49771 6.53726 6.61027 6.69486 6.78859 6.79810 7.32423 7.42806 7.55041 7.67119 8.18224 8.74493 8.98857 9.47538 10.98780 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.027293 B = 0.007235 C = 0.006792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.664438 B = 3869.239198 C = 4121.504721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.077 3.923 3 Si 0.868 3.132 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.504 4.504 8 H 0.080 0.920 9 C 0.188 3.812 10 H 0.024 0.976 11 C -0.148 4.148 12 C -0.126 4.126 13 C -0.136 4.136 14 C 0.134 3.866 15 C -0.178 4.178 16 C 0.073 3.927 17 N -0.546 5.546 18 C 0.069 3.931 19 C -0.152 4.152 20 C -0.104 4.104 21 C -0.107 4.107 22 H 0.077 0.923 23 C 0.072 3.928 24 O -0.363 6.363 25 H 0.266 0.734 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.091 0.909 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.018 -5.340 3.991 17.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.125 4.125 3 Si 0.696 3.304 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.542 4.542 8 H 0.098 0.902 9 C 0.131 3.869 10 H 0.041 0.959 11 C -0.187 4.187 12 C -0.164 4.164 13 C -0.174 4.174 14 C 0.094 3.906 15 C -0.217 4.217 16 C -0.055 4.055 17 N -0.267 5.267 18 C -0.060 4.060 19 C -0.191 4.191 20 C -0.141 4.141 21 C -0.127 4.127 22 H 0.096 0.904 23 C -0.055 4.055 24 O -0.282 6.282 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.109 0.891 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.505 -5.392 4.490 17.019 hybrid contribution 1.075 1.387 -1.165 2.106 sum 16.580 -4.005 3.325 17.378 Atomic orbital electron populations 1.69882 1.06071 1.27075 1.49976 1.24812 0.94658 0.98556 0.94504 0.87054 0.80400 0.84068 0.78868 1.19933 1.21231 1.18797 1.20837 0.88383 0.95160 1.49786 0.90152 1.20168 0.95078 0.82930 0.88688 0.95856 1.22480 0.92565 1.01477 1.02144 1.21692 0.98386 0.96656 0.99669 1.22178 0.99323 0.98219 0.97665 1.20893 0.84410 0.93133 0.92200 1.22624 1.00864 1.00805 0.97447 1.21679 1.02510 0.88156 0.93109 1.60244 1.12134 1.03244 1.51101 1.21720 0.87556 1.01419 0.95309 1.21983 0.98892 1.01058 0.97160 1.21173 0.94667 0.99538 0.98753 1.21432 0.95423 0.96446 0.99417 0.90449 1.21956 0.99601 0.95029 0.88934 1.87875 1.18222 1.38536 1.83616 0.92382 0.92643 0.91698 0.93030 0.92816 0.91596 0.92392 0.91714 0.91323 0.90067 0.91847 0.91600 0.91453 0.91775 0.92858 0.92337 0.91983 0.89062 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.13 13.96 55.43 0.77 -26.36 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.87 21.22 25.78 -169.99 -4.38 16.83 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.26 -6.13 6.13 56.52 0.35 -5.79 16 7 C -0.50 -14.41 9.24 -34.31 -0.32 -14.73 16 8 H 0.08 2.54 8.06 -52.48 -0.42 2.12 16 9 C 0.19 4.52 1.93 -27.71 -0.05 4.47 16 10 H 0.02 0.59 4.01 -51.96 -0.21 0.38 16 11 C -0.15 -3.19 5.18 -26.63 -0.14 -3.33 16 12 C -0.13 -2.21 5.70 -26.62 -0.15 -2.36 16 13 C -0.14 -2.19 4.20 -26.55 -0.11 -2.31 16 14 C 0.13 2.32 0.46 -90.89 -0.04 2.28 16 15 C -0.18 -2.91 3.43 -27.37 -0.09 -3.01 16 16 C 0.07 1.16 5.72 -4.71 -0.03 1.14 16 17 N -0.55 -7.93 4.80 -236.46 -1.13 -9.07 16 18 C 0.07 0.81 5.75 -4.81 -0.03 0.78 16 19 C -0.15 -1.69 5.07 -27.63 -0.14 -1.83 16 20 C -0.10 -1.24 5.08 -27.69 -0.14 -1.38 16 21 C -0.11 -1.60 2.13 -91.10 -0.19 -1.79 16 22 H 0.08 1.20 8.23 -51.32 -0.42 0.78 16 23 C 0.07 1.09 5.60 -3.94 -0.02 1.07 16 24 O -0.36 -8.10 9.02 -35.23 -0.32 -8.41 16 25 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 26 H 0.05 1.22 6.20 -51.93 -0.32 0.90 16 27 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.05 0.80 8.15 -51.87 -0.42 0.38 16 29 H 0.05 0.92 6.91 -51.95 -0.36 0.56 16 30 H 0.07 1.08 8.14 -51.96 -0.42 0.65 16 31 H 0.06 0.81 6.68 -51.91 -0.35 0.46 16 32 H 0.06 0.94 5.46 -52.08 -0.28 0.66 16 33 H 0.07 1.26 5.23 -51.25 -0.27 0.99 16 34 H 0.08 1.49 8.19 -51.58 -0.42 1.07 16 35 H 0.06 0.89 8.10 -51.59 -0.42 0.47 16 36 H 0.07 0.72 8.10 -51.54 -0.42 0.30 16 37 H 0.07 0.73 8.20 -51.55 -0.42 0.30 16 38 H 0.06 0.75 5.79 -52.09 -0.30 0.45 16 39 H 0.05 0.50 8.28 -50.94 -0.42 0.08 16 40 H 0.06 0.63 8.23 -51.34 -0.42 0.21 16 41 H 0.06 0.73 6.32 -51.56 -0.33 0.40 16 42 H 0.09 1.61 7.67 -52.02 -0.40 1.21 16 43 H 0.07 0.90 8.12 -52.00 -0.42 0.48 16 LS Contribution 299.38 15.07 4.51 4.51 Total: -1.00 -29.58 299.38 -9.17 -38.75 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.07 Total: 2.64 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -1.56 Total: -18.89 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: -0.36 Total: -35.43 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.32 Total: -8.41 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.38 Total: 16.83 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.58 -9.17 -38.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686234883.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.082 kcal (2) G-P(sol) polarization free energy of solvation -29.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds