Wall clock time and date at job start Mon Mar 30 2020 07:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00258 * 2 1 4 4 H 1.48499 * 109.47508 * 264.83466 * 3 2 1 5 5 H 1.48503 * 109.46905 * 24.83313 * 3 2 1 6 6 H 1.48500 * 109.47409 * 144.83006 * 3 2 1 7 7 C 1.37884 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99609 * 6.41555 * 7 2 1 9 9 C 1.50966 * 120.00274 * 186.41414 * 7 2 1 10 10 H 1.08944 * 108.91576 * 34.63208 * 9 7 2 11 11 C 1.53090 * 109.14101 * 275.07517 * 9 7 2 12 12 C 1.53104 * 109.15352 * 183.76047 * 11 9 7 13 13 C 1.53107 * 109.12669 * 57.20849 * 12 11 9 14 14 C 1.53248 * 109.48311 * 302.38051 * 13 12 11 15 15 C 1.52375 * 109.48515 * 296.64420 * 14 13 12 16 16 C 1.52371 * 112.02919 * 190.61699 * 15 14 13 17 17 N 1.45863 * 112.23714 * 48.67696 * 16 15 14 18 18 C 1.45858 * 113.86744 * 70.76760 * 17 16 15 19 19 C 1.52176 * 112.55176 * 289.34482 * 18 17 16 20 20 C 1.52067 * 113.02721 * 314.65938 * 19 18 17 21 21 C 1.52046 * 113.19972 * 43.06651 * 20 19 18 22 22 H 1.10066 * 108.87919 * 190.42718 * 21 20 19 23 23 C 1.46530 * 112.18663 * 302.47054 * 17 16 15 24 24 O 1.42445 * 109.34231 * 155.04105 * 9 7 2 25 25 H 0.97000 * 119.99889 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.50847 * 63.82972 * 11 9 7 27 27 H 1.09004 * 109.52680 * 303.72855 * 11 9 7 28 28 H 1.09096 * 109.46898 * 177.01134 * 12 11 9 29 29 H 1.08961 * 109.66507 * 296.97758 * 12 11 9 30 30 H 1.08946 * 109.64419 * 62.42869 * 13 12 11 31 31 H 1.09028 * 109.24218 * 182.55239 * 13 12 11 32 32 H 1.08732 * 110.59975 * 314.67147 * 15 14 13 33 33 H 1.10185 * 108.72499 * 71.06047 * 15 14 13 34 34 H 1.09617 * 109.09543 * 287.42228 * 16 15 14 35 35 H 1.09604 * 109.11142 * 169.99523 * 16 15 14 36 36 H 1.09686 * 109.18738 * 50.68108 * 18 17 16 37 37 H 1.09672 * 109.19529 * 167.97148 * 18 17 16 38 38 H 1.08719 * 110.86119 * 80.08065 * 19 18 17 39 39 H 1.10719 * 107.73252 * 195.59122 * 19 18 17 40 40 H 1.10038 * 108.82869 * 281.87912 * 20 19 18 41 41 H 1.09656 * 109.33629 * 165.55052 * 20 19 18 42 42 H 1.08838 * 109.95079 * 304.48923 * 23 17 16 43 43 H 1.08875 * 109.90132 * 183.39995 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6059 1.9834 -1.3943 5 1 1.3963 2.6817 0.5880 6 1 3.4878 1.4741 0.8064 7 6 2.0046 -1.1941 0.0005 8 1 1.4696 -2.1265 -0.1036 9 6 3.5071 -1.1981 0.1466 10 1 3.7997 -0.3848 0.8098 11 6 4.1458 -0.9919 -1.2294 12 6 5.6679 -1.0897 -1.0964 13 6 6.0324 -2.4477 -0.4906 14 6 5.3370 -2.6054 0.8659 15 6 5.8540 -1.5435 1.8287 16 6 5.4013 -1.8012 3.2606 17 7 5.6369 -3.1799 3.6744 18 6 7.0455 -3.5060 3.8660 19 6 7.8140 -3.5679 2.5540 20 6 7.0784 -4.3396 1.4697 21 6 5.5950 -4.0128 1.4034 22 1 5.1008 -4.7345 0.7353 23 6 4.9690 -4.1433 2.7952 24 8 3.9252 -2.4475 0.6883 25 1 -0.4850 0.8401 -0.0004 26 1 3.8755 -0.0078 -1.6124 27 1 3.7890 -1.7601 -1.9155 28 1 6.1257 -0.9964 -2.0823 29 1 6.0319 -0.2898 -0.4523 30 1 5.7089 -3.2454 -1.1584 31 1 7.1126 -2.5015 -0.3530 32 1 6.9377 -1.4731 1.7745 33 1 5.4639 -0.5619 1.5153 34 1 4.3317 -1.5760 3.3445 35 1 5.9384 -1.1237 3.9342 36 1 7.5050 -2.7516 4.5163 37 1 7.1255 -4.4738 4.3757 38 1 8.0779 -2.5701 2.2124 39 1 8.7727 -4.0863 2.7489 40 1 7.1973 -5.4173 1.6579 41 1 7.5440 -4.1340 0.4984 42 1 3.9047 -3.9220 2.7421 43 1 5.1189 -5.1540 3.1712 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686234883.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:56 Heat of formation + Delta-G solvation = -72.974138 kcal Electronic energy + Delta-G solvation = -22591.751829 eV Core-core repulsion = 19635.028326 eV Total energy + Delta-G solvation = -2956.723503 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.06739 -39.21438 -35.22942 -34.63068 -34.02959 -33.32564 -31.59640 -30.39322 -27.46822 -26.04655 -24.75256 -23.82846 -22.71081 -22.57371 -20.44089 -19.70023 -18.72698 -17.27402 -16.93043 -16.71773 -16.02650 -15.79504 -15.75279 -15.24201 -15.07299 -14.71142 -14.56206 -14.27133 -13.78698 -13.63759 -13.43301 -13.21165 -13.00706 -12.90242 -12.76829 -12.73802 -12.34162 -12.26791 -11.97569 -11.86324 -11.77971 -11.63731 -11.26833 -11.10524 -10.99709 -10.79829 -10.47563 -9.95648 -8.90326 -8.38247 -6.43348 1.25937 1.28645 1.38253 2.24906 2.80981 3.11531 3.16663 3.64454 3.82872 3.91211 3.99556 4.05739 4.12151 4.22563 4.23818 4.25799 4.36264 4.40005 4.51722 4.56299 4.63270 4.70220 4.73344 4.85242 4.92248 4.95009 4.99546 5.01650 5.06251 5.08399 5.16680 5.21128 5.22110 5.29921 5.32422 5.37199 5.47066 5.56210 5.64592 6.07042 6.26050 6.48261 6.61749 6.95997 7.24134 8.79096 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.027293 B = 0.007235 C = 0.006792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.664438 B = 3869.239198 C = 4121.504721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.020 3.980 3 Si 0.937 3.063 4 H -0.256 1.256 5 H -0.281 1.281 6 H -0.244 1.244 7 C -0.522 4.522 8 H 0.025 0.975 9 C 0.199 3.801 10 H 0.020 0.980 11 C -0.147 4.147 12 C -0.121 4.121 13 C -0.132 4.132 14 C 0.121 3.879 15 C -0.172 4.172 16 C 0.076 3.924 17 N -0.553 5.553 18 C 0.065 3.935 19 C -0.150 4.150 20 C -0.099 4.099 21 C -0.104 4.104 22 H 0.062 0.938 23 C 0.074 3.926 24 O -0.394 6.394 25 H 0.270 0.730 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.046 0.954 34 H 0.039 0.961 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.048 0.952 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.626 -4.861 4.286 21.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.180 1.180 5 H -0.206 1.206 6 H -0.168 1.168 7 C -0.560 4.560 8 H 0.044 0.956 9 C 0.142 3.858 10 H 0.037 0.963 11 C -0.185 4.185 12 C -0.159 4.159 13 C -0.170 4.170 14 C 0.082 3.918 15 C -0.211 4.211 16 C -0.053 4.053 17 N -0.274 5.274 18 C -0.063 4.063 19 C -0.189 4.189 20 C -0.137 4.137 21 C -0.124 4.124 22 H 0.081 0.919 23 C -0.054 4.054 24 O -0.314 6.314 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 20.140 -4.938 4.784 21.282 hybrid contribution -0.439 1.070 -1.195 1.663 sum 19.702 -3.867 3.589 20.396 Atomic orbital electron populations 1.70041 1.08142 1.28432 1.51539 1.25740 0.95514 1.02789 0.93758 0.85956 0.79554 0.78459 0.80074 1.18049 1.20646 1.16778 1.21128 0.91413 0.93343 1.50097 0.95640 1.19829 0.92144 0.83628 0.90202 0.96279 1.22322 0.95992 1.00563 0.99623 1.21666 0.94749 0.97754 1.01687 1.22176 1.01203 0.97287 0.96329 1.21327 0.81651 0.95054 0.93753 1.22594 1.02409 0.98987 0.97066 1.21590 1.00306 0.89645 0.93719 1.60201 1.14458 1.02175 1.50615 1.21865 0.85475 1.02644 0.96317 1.21940 0.99679 1.01265 0.96025 1.21159 0.91784 1.00891 0.99841 1.21458 0.98012 0.94493 0.98463 0.91915 1.21844 0.97432 0.96247 0.89902 1.87814 1.22265 1.37499 1.83802 0.92062 0.93170 0.93238 0.90235 0.91837 0.92143 0.88793 0.88686 0.93515 0.94229 0.89681 0.90251 0.90051 0.91838 0.89998 0.90593 0.90978 0.93355 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.19 13.96 21.45 0.30 -59.89 16 2 C 0.02 1.20 5.47 84.66 0.46 1.66 16 3 Si 0.94 44.32 25.78 68.60 1.77 46.09 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 6 H -0.24 -10.71 6.13 99.48 0.61 -10.10 16 7 C -0.52 -31.81 9.24 25.69 0.24 -31.57 16 8 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 9 C 0.20 9.85 1.93 29.96 0.06 9.91 16 10 H 0.02 0.98 4.01 -2.42 -0.01 0.97 16 11 C -0.15 -6.26 5.18 30.66 0.16 -6.10 16 12 C -0.12 -3.87 5.70 30.66 0.17 -3.70 16 13 C -0.13 -3.89 4.20 30.71 0.13 -3.76 16 14 C 0.12 4.07 0.46 -10.97 -0.01 4.07 16 15 C -0.17 -5.26 3.43 30.18 0.10 -5.16 16 16 C 0.08 2.34 5.72 86.29 0.49 2.83 16 17 N -0.55 -15.22 4.80 -902.02 -4.33 -19.55 16 18 C 0.06 1.26 5.75 86.23 0.50 1.76 16 19 C -0.15 -2.57 5.07 30.01 0.15 -2.42 16 20 C -0.10 -1.96 5.08 29.97 0.15 -1.81 16 21 C -0.10 -2.96 2.13 -11.10 -0.02 -2.98 16 22 H 0.06 1.94 8.23 -1.82 -0.01 1.92 16 23 C 0.07 2.21 5.60 86.43 0.48 2.69 16 24 O -0.39 -18.29 9.02 -148.98 -1.34 -19.64 16 25 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 26 H 0.05 2.15 6.20 -2.38 -0.01 2.14 16 27 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.08 2.14 8.15 -2.34 -0.02 2.12 16 29 H 0.06 1.93 6.91 -2.41 -0.02 1.92 16 30 H 0.06 1.85 8.14 -2.42 -0.02 1.83 16 31 H 0.09 2.13 6.68 -2.37 -0.02 2.11 16 32 H 0.09 2.34 5.46 -2.53 -0.01 2.33 16 33 H 0.05 1.64 5.23 -1.75 -0.01 1.63 16 34 H 0.04 1.52 8.19 -2.06 -0.02 1.50 16 35 H 0.08 2.22 8.10 -2.07 -0.02 2.20 16 36 H 0.08 1.38 8.10 -2.02 -0.02 1.36 16 37 H 0.08 1.40 8.20 -2.03 -0.02 1.38 16 38 H 0.06 1.11 5.79 -2.54 -0.01 1.10 16 39 H 0.08 1.03 8.28 -1.46 -0.01 1.02 16 40 H 0.08 1.29 8.23 -1.83 -0.02 1.27 16 41 H 0.07 1.32 6.32 -2.04 -0.01 1.31 16 42 H 0.05 1.83 7.67 -2.47 -0.02 1.81 16 43 H 0.09 2.25 8.12 -2.45 -0.02 2.23 16 Total: -1.00 -69.70 299.38 0.39 -69.31 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.92 Total: 18.27 kcal Atomic # 6 Polarization: -37.67 SS G_CDS: 3.07 Total: -34.59 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -4.03 Total: -79.44 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -1.34 Total: -19.64 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.77 Total: 46.09 kcal Total: -69.70 0.39 -69.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686234883.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.663 kcal (2) G-P(sol) polarization free energy of solvation -69.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds