Wall clock time and date at job start Mon Mar 30 2020 08:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53026 * 1 3 3 C 1.50698 * 109.73493 * 2 1 4 4 H 1.08004 * 120.00172 * 239.55555 * 3 2 1 5 5 C 1.37873 * 120.00319 * 59.54941 * 3 2 1 6 6 N 1.31522 * 119.99794 * 0.02562 * 5 3 2 7 7 Si 1.86799 * 120.00492 * 180.02562 * 5 3 2 8 8 H 1.48494 * 109.46923 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47134 * 120.00120 * 7 5 3 10 10 H 1.48504 * 109.47159 * 240.00084 * 7 5 3 11 11 C 1.54415 * 109.84811 * 239.07845 * 2 1 3 12 12 C 1.55330 * 102.12796 * 262.86236 * 11 2 1 13 13 C 1.54859 * 100.93740 * 325.34334 * 12 11 2 14 14 C 1.51962 * 109.45992 * 278.06765 * 13 12 11 15 15 C 1.52357 * 112.43500 * 192.62504 * 14 13 12 16 16 N 1.45847 * 112.33008 * 46.69659 * 15 14 13 17 17 C 1.45843 * 113.95975 * 70.68210 * 16 15 14 18 18 C 1.52247 * 112.43828 * 289.11732 * 17 16 15 19 19 C 1.52246 * 112.50653 * 313.12180 * 18 17 16 20 20 C 1.52206 * 109.35268 * 153.97119 * 13 12 11 21 21 H 1.09975 * 108.61972 * 293.23869 * 20 13 12 22 22 C 1.46546 * 112.11814 * 302.12186 * 16 15 14 23 23 O 1.43242 * 109.90164 * 121.05094 * 2 1 3 24 24 H 1.08993 * 109.46856 * 300.40213 * 1 2 3 25 25 H 1.08994 * 109.47146 * 60.40486 * 1 2 3 26 26 H 1.09000 * 109.47245 * 180.40470 * 1 2 3 27 27 H 0.96995 * 120.00178 * 180.02562 * 6 5 3 28 28 H 1.08966 * 110.88301 * 21.08602 * 11 2 1 29 29 H 1.08975 * 110.88682 * 144.64431 * 11 2 1 30 30 H 1.08976 * 111.15983 * 207.58479 * 12 11 2 31 31 H 1.08935 * 111.28113 * 83.19457 * 12 11 2 32 32 H 1.08659 * 110.73358 * 317.17254 * 14 13 12 33 33 H 1.10396 * 108.11979 * 73.45938 * 14 13 12 34 34 H 1.09627 * 109.13303 * 285.38708 * 15 14 13 35 35 H 1.09625 * 109.11986 * 167.99743 * 15 14 13 36 36 H 1.09604 * 109.22469 * 50.43543 * 17 16 15 37 37 H 1.09636 * 109.16593 * 167.91140 * 17 16 15 38 38 H 1.10523 * 107.93095 * 194.00948 * 18 17 16 39 39 H 1.08678 * 110.82926 * 77.91785 * 18 17 16 40 40 H 1.09824 * 109.02736 * 284.62407 * 19 18 17 41 41 H 1.09597 * 109.34576 * 167.49804 * 19 18 17 42 42 H 1.08879 * 109.91311 * 184.27179 * 22 16 15 43 43 H 1.08861 * 109.92667 * 305.33705 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5303 0.0000 0.0000 3 6 2.0391 1.4185 0.0000 4 1 2.6676 1.7668 -0.8064 5 6 1.7024 2.2717 1.0293 6 7 0.9374 1.8475 2.0115 7 14 2.3325 4.0302 1.0290 8 1 3.1676 4.2565 -0.1779 9 1 1.1815 4.9685 1.0182 10 1 3.1499 4.2634 2.2467 11 6 2.0545 -0.7463 -1.2460 12 6 2.3428 -2.1639 -0.6800 13 6 2.8199 -1.8171 0.7519 14 6 4.2869 -1.4224 0.7151 15 6 4.9086 -1.3649 2.1048 16 7 4.5769 -2.5355 2.9091 17 6 5.2302 -3.7622 2.4671 18 6 4.6682 -4.2776 1.1493 19 6 3.1459 -4.2893 1.1298 20 6 2.5484 -2.9975 1.6736 21 1 1.4603 -3.1227 1.7727 22 6 3.1296 -2.7082 3.0614 23 8 2.0179 -0.6947 1.1539 24 1 -0.3633 0.5200 0.8863 25 1 -0.3633 0.5075 -0.8935 26 1 -0.3634 -1.0276 0.0073 27 1 0.7001 2.4479 2.7354 28 1 1.2929 -0.7856 -2.0243 29 1 2.9675 -0.2838 -1.6204 30 1 3.1319 -2.6599 -1.2447 31 1 1.4385 -2.7707 -0.6542 32 1 4.8489 -2.0905 0.0682 33 1 4.3606 -0.4165 0.2660 34 1 4.5575 -0.4623 2.6185 35 1 5.9980 -1.2899 2.0080 36 1 6.3044 -3.5778 2.3521 37 1 5.1056 -4.5336 3.2362 38 1 5.0203 -5.3163 1.0123 39 1 5.0622 -3.7078 0.3120 40 1 2.7865 -5.1328 1.7344 41 1 2.7972 -4.4503 0.1033 42 1 2.9240 -3.5446 3.7275 43 1 2.6876 -1.7980 3.4629 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686235077.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:07:21 Heat of formation + Delta-G solvation = -47.872734 kcal Electronic energy + Delta-G solvation = -22743.558727 eV Core-core repulsion = 19787.923703 eV Total energy + Delta-G solvation = -2955.635024 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.47724 -37.64840 -33.30096 -32.83349 -31.33775 -31.09006 -30.15420 -28.15140 -25.30466 -24.88780 -23.79962 -22.18668 -21.39075 -20.36186 -19.29244 -17.79555 -16.40691 -15.47042 -15.09795 -14.73712 -14.49118 -14.46137 -14.14408 -13.47989 -13.21938 -12.75380 -12.48275 -12.25074 -12.11593 -11.90621 -11.84015 -11.48174 -11.14184 -11.13161 -10.95579 -10.88104 -10.70307 -10.63065 -10.43115 -10.34854 -10.03347 -9.94718 -9.72311 -9.55846 -9.30404 -8.96758 -8.43421 -7.79867 -7.57946 -5.90532 -4.06241 3.30856 3.39746 3.42312 4.42542 4.45412 4.75246 4.97067 5.13112 5.27030 5.37221 5.41516 5.50213 5.56384 5.63931 5.66179 5.79389 5.87776 5.91348 5.99750 6.07308 6.15083 6.16457 6.21903 6.28741 6.39711 6.43052 6.53524 6.56186 6.62555 6.67845 6.71656 6.84294 6.86508 6.96093 7.04683 7.17134 7.48366 7.62459 7.74731 7.83198 8.14300 8.42434 8.71731 9.12341 9.64705 11.11081 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.025309 B = 0.007760 C = 0.006935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.071328 B = 3607.459848 C = 4036.438462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.231 3.769 3 C -0.531 4.531 4 H 0.056 0.944 5 C 0.083 3.917 6 N -0.858 5.858 7 Si 0.883 3.117 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.283 1.283 11 C -0.141 4.141 12 C -0.146 4.146 13 C 0.124 3.876 14 C -0.156 4.156 15 C 0.077 3.923 16 N -0.550 5.550 17 C 0.070 3.930 18 C -0.152 4.152 19 C -0.103 4.103 20 C -0.112 4.112 21 H 0.072 0.928 22 C 0.075 3.925 23 O -0.339 6.339 24 H 0.089 0.911 25 H 0.033 0.967 26 H 0.009 0.991 27 H 0.257 0.743 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.257 -10.865 -1.224 12.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.194 3.806 3 C -0.569 4.569 4 H 0.074 0.926 5 C -0.122 4.122 6 N -0.495 5.495 7 Si 0.711 3.289 8 H -0.199 1.199 9 H -0.211 1.211 10 H -0.209 1.209 11 C -0.179 4.179 12 C -0.184 4.184 13 C 0.083 3.917 14 C -0.195 4.195 15 C -0.051 4.051 16 N -0.271 5.271 17 C -0.058 4.058 18 C -0.191 4.191 19 C -0.141 4.141 20 C -0.132 4.132 21 H 0.091 0.909 22 C -0.053 4.053 23 O -0.259 6.259 24 H 0.108 0.892 25 H 0.052 0.948 26 H 0.028 0.972 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.311 -10.651 -0.402 11.908 hybrid contribution 0.062 0.728 -1.189 1.395 sum 5.373 -9.922 -1.591 11.395 Atomic orbital electron populations 1.21983 0.97718 0.97393 1.02528 1.19583 0.90659 0.90294 0.80057 1.21275 1.32690 0.94862 1.08041 0.92601 1.24959 0.94224 0.97802 0.95239 1.69963 1.34689 1.34836 1.10020 0.86710 0.78799 0.85446 0.77992 1.19895 1.21063 1.20936 1.23210 1.00627 0.94177 0.99856 1.23282 1.00059 0.97939 0.97126 1.21292 0.90905 0.87900 0.91607 1.22308 0.96274 1.02940 0.98003 1.21650 0.98562 0.92976 0.91935 1.60200 1.10850 1.03689 1.52328 1.21689 0.97823 0.91779 0.94544 1.22018 0.96362 1.00991 0.99714 1.21248 0.94845 0.96870 1.01124 1.21534 1.00697 0.93682 0.97298 0.90925 1.21919 0.86325 1.02136 0.94907 1.88757 1.66234 1.38955 1.31932 0.89236 0.94786 0.97178 0.93241 0.92564 0.92011 0.92399 0.91909 0.92771 0.90707 0.90194 0.92345 0.91757 0.91751 0.93107 0.91625 0.92712 0.92276 0.91805 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.51 37.17 0.32 -3.07 16 2 C 0.23 5.68 0.75 -91.02 -0.07 5.61 16 3 C -0.53 -14.38 8.22 -34.44 -0.28 -14.66 16 4 H 0.06 1.51 7.54 -52.48 -0.40 1.12 16 5 C 0.08 2.27 5.26 -17.82 -0.09 2.18 16 6 N -0.86 -24.37 10.94 55.43 0.61 -23.76 16 7 Si 0.88 21.17 29.54 -169.99 -5.02 16.15 16 8 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 C -0.14 -2.94 5.65 -24.75 -0.14 -3.08 16 12 C -0.15 -2.67 4.57 -24.52 -0.11 -2.78 16 13 C 0.12 2.40 0.50 -90.57 -0.05 2.35 16 14 C -0.16 -2.87 3.98 -27.59 -0.11 -2.98 16 15 C 0.08 1.35 5.78 -4.72 -0.03 1.32 16 16 N -0.55 -8.89 4.78 -236.43 -1.13 -10.03 16 17 C 0.07 0.94 5.76 -4.78 -0.03 0.91 16 18 C -0.15 -1.95 5.14 -27.50 -0.14 -2.09 16 19 C -0.10 -1.43 5.17 -27.44 -0.14 -1.58 16 20 C -0.11 -1.91 2.12 -91.24 -0.19 -2.10 16 21 H 0.07 1.31 8.22 -51.37 -0.42 0.89 16 22 C 0.07 1.27 5.63 -3.91 -0.02 1.25 16 23 O -0.34 -8.29 9.23 -35.23 -0.33 -8.62 16 24 H 0.09 2.42 6.05 -51.93 -0.31 2.11 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.06 1.10 7.83 -51.95 -0.41 0.70 16 29 H 0.06 1.29 7.53 -51.94 -0.39 0.90 16 30 H 0.06 0.94 7.68 -51.94 -0.40 0.54 16 31 H 0.06 1.11 7.93 -51.97 -0.41 0.70 16 32 H 0.05 0.89 5.37 -52.12 -0.28 0.61 16 33 H 0.07 1.57 7.80 -51.13 -0.40 1.17 16 34 H 0.08 1.63 8.19 -51.57 -0.42 1.20 16 35 H 0.06 0.91 8.10 -51.57 -0.42 0.50 16 36 H 0.06 0.79 8.10 -51.59 -0.42 0.38 16 37 H 0.06 0.79 8.20 -51.57 -0.42 0.37 16 38 H 0.05 0.56 8.27 -51.06 -0.42 0.13 16 39 H 0.07 0.89 5.68 -52.11 -0.30 0.59 16 40 H 0.05 0.69 8.21 -51.46 -0.42 0.27 16 41 H 0.06 0.81 6.86 -51.59 -0.35 0.46 16 42 H 0.06 0.96 8.13 -52.00 -0.42 0.54 16 43 H 0.09 1.76 7.95 -52.01 -0.41 1.35 16 LS Contribution 311.11 15.07 4.69 4.69 Total: -1.00 -28.15 311.11 -9.68 -37.84 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.41 Total: 2.45 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -1.09 Total: -18.71 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: -0.52 Total: -33.79 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.33 Total: -8.62 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.15 -9.68 -37.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686235077.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.033 kcal (2) G-P(sol) polarization free energy of solvation -28.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds