Wall clock time and date at job start Mon Mar 30 2020 08:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53026 * 1 3 3 C 1.50698 * 109.73493 * 2 1 4 4 H 1.08004 * 120.00172 * 239.55555 * 3 2 1 5 5 C 1.37873 * 120.00319 * 59.54941 * 3 2 1 6 6 N 1.31522 * 119.99794 * 0.02562 * 5 3 2 7 7 Si 1.86799 * 120.00492 * 180.02562 * 5 3 2 8 8 H 1.48494 * 109.46923 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47134 * 120.00120 * 7 5 3 10 10 H 1.48504 * 109.47159 * 240.00084 * 7 5 3 11 11 C 1.54415 * 109.84811 * 239.07845 * 2 1 3 12 12 C 1.55330 * 102.12796 * 262.86236 * 11 2 1 13 13 C 1.54859 * 100.93740 * 325.34334 * 12 11 2 14 14 C 1.51962 * 109.45992 * 278.06765 * 13 12 11 15 15 C 1.52357 * 112.43500 * 192.62504 * 14 13 12 16 16 N 1.45847 * 112.33008 * 46.69659 * 15 14 13 17 17 C 1.45843 * 113.95975 * 70.68210 * 16 15 14 18 18 C 1.52247 * 112.43828 * 289.11732 * 17 16 15 19 19 C 1.52246 * 112.50653 * 313.12180 * 18 17 16 20 20 C 1.52206 * 109.35268 * 153.97119 * 13 12 11 21 21 H 1.09975 * 108.61972 * 293.23869 * 20 13 12 22 22 C 1.46546 * 112.11814 * 302.12186 * 16 15 14 23 23 O 1.43242 * 109.90164 * 121.05094 * 2 1 3 24 24 H 1.08993 * 109.46856 * 300.40213 * 1 2 3 25 25 H 1.08994 * 109.47146 * 60.40486 * 1 2 3 26 26 H 1.09000 * 109.47245 * 180.40470 * 1 2 3 27 27 H 0.96995 * 120.00178 * 180.02562 * 6 5 3 28 28 H 1.08966 * 110.88301 * 21.08602 * 11 2 1 29 29 H 1.08975 * 110.88682 * 144.64431 * 11 2 1 30 30 H 1.08976 * 111.15983 * 207.58479 * 12 11 2 31 31 H 1.08935 * 111.28113 * 83.19457 * 12 11 2 32 32 H 1.08659 * 110.73358 * 317.17254 * 14 13 12 33 33 H 1.10396 * 108.11979 * 73.45938 * 14 13 12 34 34 H 1.09627 * 109.13303 * 285.38708 * 15 14 13 35 35 H 1.09625 * 109.11986 * 167.99743 * 15 14 13 36 36 H 1.09604 * 109.22469 * 50.43543 * 17 16 15 37 37 H 1.09636 * 109.16593 * 167.91140 * 17 16 15 38 38 H 1.10523 * 107.93095 * 194.00948 * 18 17 16 39 39 H 1.08678 * 110.82926 * 77.91785 * 18 17 16 40 40 H 1.09824 * 109.02736 * 284.62407 * 19 18 17 41 41 H 1.09597 * 109.34576 * 167.49804 * 19 18 17 42 42 H 1.08879 * 109.91311 * 184.27179 * 22 16 15 43 43 H 1.08861 * 109.92667 * 305.33705 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5303 0.0000 0.0000 3 6 2.0391 1.4185 0.0000 4 1 2.6676 1.7668 -0.8064 5 6 1.7024 2.2717 1.0293 6 7 0.9374 1.8475 2.0115 7 14 2.3325 4.0302 1.0290 8 1 3.1676 4.2565 -0.1779 9 1 1.1815 4.9685 1.0182 10 1 3.1499 4.2634 2.2467 11 6 2.0545 -0.7463 -1.2460 12 6 2.3428 -2.1639 -0.6800 13 6 2.8199 -1.8171 0.7519 14 6 4.2869 -1.4224 0.7151 15 6 4.9086 -1.3649 2.1048 16 7 4.5769 -2.5355 2.9091 17 6 5.2302 -3.7622 2.4671 18 6 4.6682 -4.2776 1.1493 19 6 3.1459 -4.2893 1.1298 20 6 2.5484 -2.9975 1.6736 21 1 1.4603 -3.1227 1.7727 22 6 3.1296 -2.7082 3.0614 23 8 2.0179 -0.6947 1.1539 24 1 -0.3633 0.5200 0.8863 25 1 -0.3633 0.5075 -0.8935 26 1 -0.3634 -1.0276 0.0073 27 1 0.7001 2.4479 2.7354 28 1 1.2929 -0.7856 -2.0243 29 1 2.9675 -0.2838 -1.6204 30 1 3.1319 -2.6599 -1.2447 31 1 1.4385 -2.7707 -0.6542 32 1 4.8489 -2.0905 0.0682 33 1 4.3606 -0.4165 0.2660 34 1 4.5575 -0.4623 2.6185 35 1 5.9980 -1.2899 2.0080 36 1 6.3044 -3.5778 2.3521 37 1 5.1056 -4.5336 3.2362 38 1 5.0203 -5.3163 1.0123 39 1 5.0622 -3.7078 0.3120 40 1 2.7865 -5.1328 1.7344 41 1 2.7972 -4.4503 0.1033 42 1 2.9240 -3.5446 3.7275 43 1 2.6876 -1.7980 3.4629 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686235077.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:07:21 Heat of formation + Delta-G solvation = -64.883450 kcal Electronic energy + Delta-G solvation = -22744.296367 eV Core-core repulsion = 19787.923703 eV Total energy + Delta-G solvation = -2956.372664 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.88694 -39.22430 -35.11541 -34.14139 -32.96998 -32.77431 -31.53738 -29.77941 -27.33765 -26.29610 -25.27340 -23.55970 -22.75259 -21.74599 -21.07723 -19.20158 -18.38423 -16.90306 -16.58332 -16.31613 -16.21554 -15.72648 -15.52841 -15.24528 -14.53882 -14.17654 -14.10318 -13.85789 -13.60199 -13.46145 -13.22951 -13.03898 -12.86468 -12.76607 -12.56034 -12.45537 -12.36623 -12.18574 -12.11002 -11.90981 -11.75342 -11.30317 -11.17670 -11.09822 -10.88894 -10.66201 -10.51248 -9.62634 -8.86780 -7.99240 -6.21012 1.37077 1.40127 1.49445 2.43344 3.09810 3.16206 3.47495 3.77496 3.88309 4.00474 4.11215 4.14889 4.22644 4.32488 4.34669 4.46913 4.50323 4.58398 4.65813 4.73965 4.80814 4.91790 4.93449 4.94872 4.99782 5.04229 5.07285 5.09438 5.12055 5.17536 5.22022 5.24528 5.37199 5.40252 5.50813 5.57465 5.60423 5.75843 6.14619 6.30019 6.38796 6.52075 6.73164 7.25248 7.54949 9.00867 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.025309 B = 0.007760 C = 0.006935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.071328 B = 3607.459848 C = 4036.438462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.220 3.780 3 C -0.545 4.545 4 H 0.048 0.952 5 C 0.036 3.964 6 N -0.886 5.886 7 Si 0.940 3.060 8 H -0.269 1.269 9 H -0.279 1.279 10 H -0.285 1.285 11 C -0.138 4.138 12 C -0.133 4.133 13 C 0.112 3.888 14 C -0.146 4.146 15 C 0.083 3.917 16 N -0.554 5.554 17 C 0.066 3.934 18 C -0.150 4.150 19 C -0.099 4.099 20 C -0.108 4.108 21 H 0.056 0.944 22 C 0.078 3.922 23 O -0.372 6.372 24 H 0.057 0.943 25 H 0.037 0.963 26 H 0.024 0.976 27 H 0.255 0.745 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.036 0.964 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.742 -13.271 -2.124 15.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.182 3.818 3 C -0.583 4.583 4 H 0.066 0.934 5 C -0.166 4.166 6 N -0.524 5.524 7 Si 0.766 3.234 8 H -0.193 1.193 9 H -0.205 1.205 10 H -0.211 1.211 11 C -0.175 4.175 12 C -0.171 4.171 13 C 0.072 3.928 14 C -0.186 4.186 15 C -0.046 4.046 16 N -0.275 5.275 17 C -0.062 4.062 18 C -0.189 4.189 19 C -0.136 4.136 20 C -0.129 4.129 21 H 0.074 0.926 22 C -0.050 4.050 23 O -0.292 6.292 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.803 -13.066 -1.315 14.790 hybrid contribution -0.389 1.448 -0.880 1.738 sum 6.414 -11.619 -2.195 13.452 Atomic orbital electron populations 1.21870 0.98173 0.97812 1.01093 1.19599 0.90472 0.89848 0.81851 1.21619 1.32248 0.96789 1.07664 0.93402 1.25631 0.94575 1.01291 0.95099 1.70107 1.35906 1.35849 1.10534 0.85811 0.78332 0.81417 0.77829 1.19312 1.20471 1.21141 1.23100 1.00464 0.95432 0.98552 1.23236 1.01249 0.96461 0.96138 1.21628 0.90760 0.87347 0.93068 1.22248 0.96260 1.01460 0.98596 1.21508 0.99554 0.92321 0.91198 1.60165 1.10287 1.04684 1.52389 1.21849 0.98298 0.90468 0.95543 1.21973 0.95239 1.02780 0.98901 1.21228 0.95656 0.95061 1.01683 1.21512 1.00051 0.94457 0.96833 0.92570 1.21792 0.86947 1.00814 0.95427 1.88696 1.67176 1.40875 1.32485 0.92376 0.94422 0.95670 0.93549 0.91461 0.92607 0.89595 0.91170 0.90010 0.94252 0.94568 0.90126 0.90283 0.89996 0.90000 0.92156 0.90765 0.91521 0.89488 0.93827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.57 8.51 71.99 0.61 -5.95 16 2 C 0.22 11.01 0.75 -11.05 -0.01 11.00 16 3 C -0.55 -30.41 8.22 25.60 0.21 -30.20 16 4 H 0.05 2.66 7.54 -2.91 -0.02 2.64 16 5 C 0.04 2.04 5.26 84.65 0.45 2.49 16 6 N -0.89 -52.42 10.94 21.45 0.23 -52.19 16 7 Si 0.94 44.68 29.54 68.60 2.03 46.71 16 8 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 9 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 10 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 11 C -0.14 -5.64 5.65 31.88 0.18 -5.46 16 12 C -0.13 -4.58 4.57 32.03 0.15 -4.43 16 13 C 0.11 4.28 0.50 -10.76 -0.01 4.27 16 14 C -0.15 -5.29 3.98 30.04 0.12 -5.17 16 15 C 0.08 2.89 5.78 86.29 0.50 3.39 16 16 N -0.55 -17.12 4.78 -901.92 -4.31 -21.43 16 17 C 0.07 1.50 5.76 86.25 0.50 1.99 16 18 C -0.15 -3.13 5.14 30.10 0.15 -2.98 16 19 C -0.10 -2.35 5.17 30.14 0.16 -2.19 16 20 C -0.11 -3.54 2.12 -11.19 -0.02 -3.56 16 21 H 0.06 2.00 8.22 -1.87 -0.02 1.98 16 22 C 0.08 2.63 5.63 86.44 0.49 3.11 16 23 O -0.37 -18.77 9.23 -148.98 -1.38 -20.14 16 24 H 0.06 3.26 6.05 -2.39 -0.01 3.25 16 25 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 28 H 0.07 2.56 7.83 -2.40 -0.02 2.54 16 29 H 0.06 2.32 7.53 -2.40 -0.02 2.30 16 30 H 0.09 2.48 7.68 -2.40 -0.02 2.46 16 31 H 0.07 2.31 7.93 -2.42 -0.02 2.29 16 32 H 0.08 2.48 5.37 -2.57 -0.01 2.47 16 33 H 0.04 1.68 7.80 -1.64 -0.01 1.67 16 34 H 0.04 1.55 8.19 -2.05 -0.02 1.53 16 35 H 0.08 2.42 8.10 -2.05 -0.02 2.40 16 36 H 0.08 1.60 8.10 -2.07 -0.02 1.59 16 37 H 0.08 1.62 8.20 -2.05 -0.02 1.61 16 38 H 0.08 1.30 8.27 -1.57 -0.01 1.28 16 39 H 0.06 1.34 5.68 -2.56 -0.01 1.32 16 40 H 0.07 1.52 8.21 -1.95 -0.02 1.51 16 41 H 0.07 1.52 6.86 -2.07 -0.01 1.51 16 42 H 0.09 2.48 8.13 -2.45 -0.02 2.46 16 43 H 0.04 1.83 7.95 -2.46 -0.02 1.81 16 Total: -1.00 -63.36 311.11 1.04 -62.33 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.99 Total: 18.43 kcal Atomic # 6 Polarization: -37.17 SS G_CDS: 3.47 Total: -33.70 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -4.08 Total: -73.62 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -1.38 Total: -20.14 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -63.36 1.04 -62.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686235077.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.556 kcal (2) G-P(sol) polarization free energy of solvation -63.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds