Wall clock time and date at job start Mon Mar 30 2020 07:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.48444 * 300.02545 * 9 7 2 11 11 C 1.53088 * 109.48107 * 180.02562 * 9 7 2 12 12 C 1.53172 * 109.17079 * 182.41829 * 11 9 7 13 13 C 1.53179 * 109.04931 * 56.91107 * 12 11 9 14 14 C 1.53098 * 109.16175 * 303.01587 * 13 12 11 15 15 C 1.52861 * 109.48554 * 177.63110 * 14 13 12 16 16 C 1.53639 * 110.60665 * 174.17058 * 15 14 13 17 17 N 1.45541 * 107.88296 * 302.81688 * 16 15 14 18 18 C 1.46343 * 117.20452 * 185.43923 * 17 16 15 19 19 C 1.54802 * 105.96084 * 208.09035 * 18 17 16 20 20 C 1.55330 * 104.99970 * 3.62974 * 19 18 17 21 21 C 1.48662 * 109.72161 * 65.24075 * 17 16 15 22 22 H 1.09000 * 111.09750 * 51.91665 * 21 17 16 23 23 C 1.52363 * 107.34083 * 290.48918 * 21 17 16 24 24 O 1.42891 * 109.48169 * 60.05619 * 9 7 2 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.52109 * 302.32593 * 11 9 7 27 27 H 1.09007 * 109.52169 * 62.44699 * 11 9 7 28 28 H 1.08997 * 109.54828 * 176.78007 * 12 11 9 29 29 H 1.09003 * 109.54526 * 296.95682 * 12 11 9 30 30 H 1.08996 * 109.52308 * 62.92186 * 13 12 11 31 31 H 1.09009 * 109.52003 * 183.11274 * 13 12 11 32 32 H 1.09001 * 109.24776 * 294.45300 * 15 14 13 33 33 H 1.08996 * 109.25281 * 53.87219 * 15 14 13 34 34 H 1.08995 * 109.77849 * 183.22280 * 16 15 14 35 35 H 1.09003 * 109.82704 * 62.44137 * 16 15 14 36 36 H 1.08999 * 110.15433 * 327.21570 * 18 17 16 37 37 H 1.09001 * 110.15026 * 88.96527 * 18 17 16 38 38 H 1.09000 * 110.33392 * 122.51218 * 19 18 17 39 39 H 1.09003 * 110.33101 * 244.64588 * 19 18 17 40 40 H 1.09001 * 110.91455 * 264.02323 * 20 19 18 41 41 H 1.09002 * 110.90846 * 140.40801 * 20 19 18 42 42 H 1.08994 * 109.84693 * 303.46620 * 23 21 17 43 43 H 1.09005 * 109.90496 * 182.50460 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6243 -2.5571 0.8894 11 6 2.2456 -3.6629 -0.0005 12 6 1.4735 -4.9844 -0.0616 13 6 0.5782 -4.9834 -1.3045 14 6 -0.3524 -3.7688 -1.2524 15 6 -1.2086 -3.7279 -2.5181 16 6 -2.2523 -2.6040 -2.4287 17 7 -3.0537 -2.8321 -1.2354 18 6 -4.1957 -1.9436 -1.0165 19 6 -4.4033 -1.8870 0.5165 20 6 -3.2405 -2.7280 1.1110 21 6 -2.2026 -2.6899 -0.0248 22 1 -1.6576 -1.7460 -0.0371 23 6 -1.2421 -3.8724 -0.0035 24 8 0.4300 -2.5754 -1.1675 25 1 -0.4850 0.8401 0.0004 26 1 2.8999 -3.5829 -0.8686 27 1 2.8436 -3.6311 0.9103 28 1 2.1766 -5.8153 -0.1195 29 1 0.8585 -5.0890 0.8322 30 1 1.1977 -4.9295 -2.1996 31 1 -0.0160 -5.8970 -1.3261 32 1 -0.5660 -3.5536 -3.3811 33 1 -1.7188 -4.6835 -2.6379 34 1 -2.8915 -2.6232 -3.3114 35 1 -1.7510 -1.6387 -2.3574 36 1 -3.9765 -0.9481 -1.4027 37 1 -5.0843 -2.3478 -1.5012 38 1 -4.3448 -0.8572 0.8689 39 1 -5.3650 -2.3245 0.7848 40 1 -3.5619 -3.7503 1.3102 41 1 -2.8460 -2.2625 2.0142 42 1 -1.8041 -4.8060 -0.0259 43 1 -0.6253 -3.8334 0.8944 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686241460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:19 Heat of formation + Delta-G solvation = -52.539467 kcal Electronic energy + Delta-G solvation = -22569.518471 eV Core-core repulsion = 19613.681082 eV Total energy + Delta-G solvation = -2955.837389 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.84248 -37.62059 -33.84810 -32.72970 -32.07051 -31.13536 -29.44814 -27.77525 -26.05703 -24.72088 -22.71546 -21.86870 -20.69606 -20.16097 -19.28948 -18.07568 -16.55319 -15.41300 -15.09432 -14.83279 -14.65036 -14.29256 -13.88233 -13.72852 -13.32792 -12.97528 -12.65429 -12.18650 -12.08027 -11.91617 -11.65929 -11.26322 -11.12722 -10.91023 -10.86705 -10.84336 -10.58382 -10.47326 -10.35124 -10.29571 -10.10739 -10.06554 -9.93863 -9.47091 -9.23761 -8.74890 -8.43638 -7.78790 -7.52232 -6.01177 -4.11791 3.31213 3.35604 3.38822 4.41241 4.62195 4.95479 5.17077 5.25227 5.38123 5.43806 5.48579 5.60994 5.74189 5.76930 5.90298 5.93023 5.98801 6.05819 6.11829 6.22072 6.24433 6.29334 6.36582 6.38947 6.43300 6.47170 6.48427 6.57854 6.60770 6.66406 6.73321 6.81178 6.90489 6.93799 7.00253 7.10635 7.26708 7.57552 7.72675 7.92196 7.95901 8.33098 8.81016 9.19525 9.57931 11.04713 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.009681 C = 0.007158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.149454 B = 2891.482172 C = 3910.852129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.082 3.918 3 Si 0.890 3.110 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.219 3.781 10 H 0.019 0.981 11 C -0.145 4.145 12 C -0.120 4.120 13 C -0.138 4.138 14 C 0.112 3.888 15 C -0.090 4.090 16 C 0.066 3.934 17 N -0.542 5.542 18 C 0.054 3.946 19 C -0.124 4.124 20 C -0.115 4.115 21 C 0.057 3.943 22 H 0.120 0.880 23 C -0.119 4.119 24 O -0.346 6.346 25 H 0.258 0.742 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.034 0.966 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.865 -6.590 -0.751 8.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.124 4.124 3 Si 0.717 3.283 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.079 0.921 9 C 0.163 3.837 10 H 0.037 0.963 11 C -0.183 4.183 12 C -0.158 4.158 13 C -0.176 4.176 14 C 0.071 3.929 15 C -0.128 4.128 16 C -0.062 4.062 17 N -0.268 5.268 18 C -0.074 4.074 19 C -0.162 4.162 20 C -0.153 4.153 21 C -0.050 4.050 22 H 0.137 0.863 23 C -0.157 4.157 24 O -0.265 6.265 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.222 -6.806 -0.992 9.274 hybrid contribution 0.750 1.428 0.124 1.618 sum -5.471 -5.378 -0.869 7.721 Atomic orbital electron populations 1.69863 1.05833 1.26209 1.47650 1.24976 0.94754 0.98910 0.93745 0.86722 0.79749 0.83195 0.78612 1.21321 1.20263 1.20249 1.20989 0.92613 0.89890 1.52699 0.92146 1.19668 0.86932 0.91653 0.85451 0.96348 1.22264 0.99672 0.95560 1.00800 1.21634 0.98232 0.98152 0.97775 1.22142 0.98488 0.98445 0.98484 1.21304 0.90367 0.87547 0.93693 1.21466 0.95972 0.98269 0.97114 1.21786 0.93927 0.98799 0.91678 1.62842 1.08614 1.51953 1.03374 1.22365 0.94305 0.94907 0.95869 1.22559 0.98552 1.00112 0.94967 1.22316 0.95622 0.99309 0.98031 1.22910 0.92772 1.01680 0.87675 0.86262 1.22002 0.97175 0.97395 0.99116 1.88370 1.57056 1.35525 1.45549 0.93193 0.92753 0.92768 0.93511 0.92501 0.92173 0.92767 0.91837 0.91778 0.92596 0.92955 0.94739 0.91757 0.91842 0.92056 0.91980 0.91615 0.92642 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.66 11.42 55.43 0.63 -23.02 16 2 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.36 8.79 -34.44 -0.30 -14.67 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.22 5.42 2.16 -27.84 -0.06 5.36 16 10 H 0.02 0.50 6.19 -51.93 -0.32 0.18 16 11 C -0.15 -3.07 5.36 -26.60 -0.14 -3.21 16 12 C -0.12 -2.16 5.71 -26.55 -0.15 -2.31 16 13 C -0.14 -2.45 4.92 -26.59 -0.13 -2.58 16 14 C 0.11 2.23 0.70 -90.28 -0.06 2.17 16 15 C -0.09 -1.64 5.04 -26.47 -0.13 -1.78 16 16 C 0.07 1.24 5.72 -4.23 -0.02 1.22 16 17 N -0.54 -9.92 4.65 -225.06 -1.05 -10.96 16 18 C 0.05 0.88 6.86 -3.18 -0.02 0.86 16 19 C -0.12 -1.89 6.98 -24.55 -0.17 -2.06 16 20 C -0.11 -1.95 6.61 -25.02 -0.17 -2.12 16 21 C 0.06 1.12 2.51 -66.59 -0.17 0.95 16 22 H 0.12 2.86 6.10 -51.93 -0.32 2.55 16 23 C -0.12 -2.30 3.69 -26.70 -0.10 -2.40 16 24 O -0.35 -8.48 8.32 -35.23 -0.29 -8.77 16 25 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 26 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.00 6.65 -51.93 -0.35 0.65 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 1.17 7.91 -51.93 -0.41 0.75 16 36 H 0.03 0.59 8.04 -51.93 -0.42 0.18 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.07 1.40 4.89 -51.93 -0.25 1.14 16 LS Contribution 315.47 15.07 4.75 4.75 Total: -1.00 -27.63 315.47 -10.23 -37.86 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.52 Total: 2.57 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -1.73 Total: -18.44 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: -0.41 Total: -33.99 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.29 Total: -8.77 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.63 -10.23 -37.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686241460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.684 kcal (2) G-P(sol) polarization free energy of solvation -27.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds