Wall clock time and date at job start Mon Mar 30 2020 07:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.48444 * 300.02545 * 9 7 2 11 11 C 1.53088 * 109.48107 * 180.02562 * 9 7 2 12 12 C 1.53172 * 109.17079 * 182.41829 * 11 9 7 13 13 C 1.53179 * 109.04931 * 56.91107 * 12 11 9 14 14 C 1.53098 * 109.16175 * 303.01587 * 13 12 11 15 15 C 1.52861 * 109.48554 * 177.63110 * 14 13 12 16 16 C 1.53639 * 110.60665 * 174.17058 * 15 14 13 17 17 N 1.45541 * 107.88296 * 302.81688 * 16 15 14 18 18 C 1.46343 * 117.20452 * 185.43923 * 17 16 15 19 19 C 1.54802 * 105.96084 * 208.09035 * 18 17 16 20 20 C 1.55330 * 104.99970 * 3.62974 * 19 18 17 21 21 C 1.48662 * 109.72161 * 65.24075 * 17 16 15 22 22 H 1.09000 * 111.09750 * 51.91665 * 21 17 16 23 23 C 1.52363 * 107.34083 * 290.48918 * 21 17 16 24 24 O 1.42891 * 109.48169 * 60.05619 * 9 7 2 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.52109 * 302.32593 * 11 9 7 27 27 H 1.09007 * 109.52169 * 62.44699 * 11 9 7 28 28 H 1.08997 * 109.54828 * 176.78007 * 12 11 9 29 29 H 1.09003 * 109.54526 * 296.95682 * 12 11 9 30 30 H 1.08996 * 109.52308 * 62.92186 * 13 12 11 31 31 H 1.09009 * 109.52003 * 183.11274 * 13 12 11 32 32 H 1.09001 * 109.24776 * 294.45300 * 15 14 13 33 33 H 1.08996 * 109.25281 * 53.87219 * 15 14 13 34 34 H 1.08995 * 109.77849 * 183.22280 * 16 15 14 35 35 H 1.09003 * 109.82704 * 62.44137 * 16 15 14 36 36 H 1.08999 * 110.15433 * 327.21570 * 18 17 16 37 37 H 1.09001 * 110.15026 * 88.96527 * 18 17 16 38 38 H 1.09000 * 110.33392 * 122.51218 * 19 18 17 39 39 H 1.09003 * 110.33101 * 244.64588 * 19 18 17 40 40 H 1.09001 * 110.91455 * 264.02323 * 20 19 18 41 41 H 1.09002 * 110.90846 * 140.40801 * 20 19 18 42 42 H 1.08994 * 109.84693 * 303.46620 * 23 21 17 43 43 H 1.09005 * 109.90496 * 182.50460 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6243 -2.5571 0.8894 11 6 2.2456 -3.6629 -0.0005 12 6 1.4735 -4.9844 -0.0616 13 6 0.5782 -4.9834 -1.3045 14 6 -0.3524 -3.7688 -1.2524 15 6 -1.2086 -3.7279 -2.5181 16 6 -2.2523 -2.6040 -2.4287 17 7 -3.0537 -2.8321 -1.2354 18 6 -4.1957 -1.9436 -1.0165 19 6 -4.4033 -1.8870 0.5165 20 6 -3.2405 -2.7280 1.1110 21 6 -2.2026 -2.6899 -0.0248 22 1 -1.6576 -1.7460 -0.0371 23 6 -1.2421 -3.8724 -0.0035 24 8 0.4300 -2.5754 -1.1675 25 1 -0.4850 0.8401 0.0004 26 1 2.8999 -3.5829 -0.8686 27 1 2.8436 -3.6311 0.9103 28 1 2.1766 -5.8153 -0.1195 29 1 0.8585 -5.0890 0.8322 30 1 1.1977 -4.9295 -2.1996 31 1 -0.0160 -5.8970 -1.3261 32 1 -0.5660 -3.5536 -3.3811 33 1 -1.7188 -4.6835 -2.6379 34 1 -2.8915 -2.6232 -3.3114 35 1 -1.7510 -1.6387 -2.3574 36 1 -3.9765 -0.9481 -1.4027 37 1 -5.0843 -2.3478 -1.5012 38 1 -4.3448 -0.8572 0.8689 39 1 -5.3650 -2.3245 0.7848 40 1 -3.5619 -3.7503 1.3102 41 1 -2.8460 -2.2625 2.0142 42 1 -1.8041 -4.8060 -0.0259 43 1 -0.6253 -3.8334 0.8944 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686241460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:18 Heat of formation + Delta-G solvation = -68.386306 kcal Electronic energy + Delta-G solvation = -22570.205641 eV Core-core repulsion = 19613.681082 eV Total energy + Delta-G solvation = -2956.524559 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.38494 -39.16230 -35.51892 -34.42118 -33.85679 -32.71664 -30.98822 -29.32565 -27.74261 -26.36285 -24.25786 -23.59732 -22.17291 -21.58026 -20.80549 -19.70413 -18.57520 -16.95060 -16.65135 -16.46002 -16.36210 -15.97834 -15.37591 -15.26319 -14.84977 -14.58694 -14.28861 -13.88019 -13.58526 -13.38714 -13.18049 -12.88511 -12.73704 -12.67502 -12.60823 -12.28185 -12.11229 -12.08214 -11.96378 -11.85487 -11.77824 -11.58213 -11.33059 -11.11544 -10.92276 -10.69089 -10.28190 -9.52527 -9.07956 -8.06739 -6.26049 1.39412 1.41091 1.47677 2.41620 3.07502 3.20435 3.61415 3.85562 3.89482 3.93522 4.13404 4.18928 4.22075 4.30407 4.43394 4.45447 4.52193 4.66023 4.71638 4.77443 4.80378 4.84560 4.88256 4.93781 4.99848 5.03121 5.07427 5.08335 5.15933 5.19620 5.22654 5.25794 5.36184 5.40941 5.42631 5.53933 5.63902 5.68769 5.90252 6.21314 6.33861 6.48675 6.74030 7.36253 7.49483 8.95546 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.009681 C = 0.007158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.149454 B = 2891.482172 C = 3910.852129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.036 3.964 3 Si 0.948 3.052 4 H -0.284 1.284 5 H -0.269 1.269 6 H -0.277 1.277 7 C -0.556 4.556 8 H 0.054 0.946 9 C 0.224 3.776 10 H -0.009 1.009 11 C -0.141 4.141 12 C -0.114 4.114 13 C -0.133 4.133 14 C 0.099 3.901 15 C -0.088 4.088 16 C 0.070 3.930 17 N -0.533 5.533 18 C 0.049 3.951 19 C -0.118 4.118 20 C -0.112 4.112 21 C 0.049 3.951 22 H 0.074 0.926 23 C -0.110 4.110 24 O -0.374 6.374 25 H 0.255 0.745 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.004 0.996 36 H 0.017 0.983 37 H 0.092 0.908 38 H 0.056 0.944 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.930 -8.342 -1.061 10.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.167 4.167 3 Si 0.774 3.226 4 H -0.210 1.210 5 H -0.194 1.194 6 H -0.203 1.203 7 C -0.593 4.593 8 H 0.072 0.928 9 C 0.168 3.832 10 H 0.009 0.991 11 C -0.179 4.179 12 C -0.152 4.152 13 C -0.171 4.171 14 C 0.059 3.941 15 C -0.125 4.125 16 C -0.058 4.058 17 N -0.258 5.258 18 C -0.079 4.079 19 C -0.156 4.156 20 C -0.150 4.150 21 C -0.059 4.059 22 H 0.092 0.908 23 C -0.148 4.148 24 O -0.294 6.294 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.023 0.977 36 H 0.035 0.965 37 H 0.110 0.890 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.287 -8.565 -1.299 11.320 hybrid contribution 1.055 1.984 0.204 2.257 sum -6.231 -6.581 -1.095 9.129 Atomic orbital electron populations 1.70038 1.06766 1.26453 1.47856 1.25693 0.95619 1.01878 0.93532 0.85793 0.78602 0.79533 0.78666 1.20972 1.19401 1.20251 1.21377 0.92721 0.91800 1.53392 0.92753 1.19404 0.87094 0.92088 0.84640 0.99106 1.22153 0.99030 0.96332 1.00417 1.21595 0.98534 0.96895 0.98126 1.22113 0.98293 0.98484 0.98212 1.21655 0.90777 0.86916 0.94795 1.21491 0.95658 0.99248 0.96139 1.21740 0.94366 0.96749 0.92993 1.62930 1.08366 1.51991 1.02480 1.22526 0.94466 0.93960 0.96939 1.22558 0.99336 0.99789 0.93894 1.22296 0.95390 1.00635 0.96676 1.22779 0.93559 0.99839 0.89704 0.90821 1.21904 0.96855 0.97999 0.98031 1.88271 1.57845 1.38371 1.44930 0.93581 0.93635 0.92626 0.90562 0.92195 0.92329 0.89639 0.92028 0.88938 0.90159 0.97733 0.96496 0.88972 0.92476 0.88885 0.90122 0.92656 0.90544 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.30 11.42 21.45 0.24 -50.05 16 2 C 0.04 2.04 5.40 84.66 0.46 2.49 16 3 Si 0.95 44.32 29.54 68.60 2.03 46.35 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 7 C -0.56 -31.54 8.79 25.60 0.23 -31.32 16 8 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 9 C 0.22 11.46 2.16 29.88 0.06 11.53 16 10 H -0.01 -0.47 6.19 -2.38 -0.01 -0.49 16 11 C -0.14 -6.01 5.36 30.68 0.16 -5.84 16 12 C -0.11 -3.87 5.71 30.71 0.18 -3.70 16 13 C -0.13 -4.43 4.92 30.69 0.15 -4.28 16 14 C 0.10 3.87 0.70 -10.57 -0.01 3.86 16 15 C -0.09 -3.07 5.04 30.76 0.16 -2.91 16 16 C 0.07 2.60 5.72 86.77 0.50 3.09 16 17 N -0.53 -18.83 4.65 -865.94 -4.03 -22.86 16 18 C 0.05 1.53 6.86 87.02 0.60 2.13 16 19 C -0.12 -3.41 6.98 32.01 0.22 -3.18 16 20 C -0.11 -3.70 6.61 31.70 0.21 -3.49 16 21 C 0.05 1.94 2.51 44.67 0.11 2.05 16 22 H 0.07 3.70 6.10 -2.39 -0.01 3.68 16 23 C -0.11 -4.18 3.69 30.62 0.11 -4.06 16 24 O -0.37 -18.87 8.32 -148.98 -1.24 -20.11 16 25 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 26 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 28 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.06 2.00 6.65 -2.39 -0.02 1.99 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 32 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.00 0.20 7.91 -2.39 -0.02 0.18 16 36 H 0.02 0.58 8.04 -2.39 -0.02 0.56 16 37 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.08 2.35 8.10 -2.39 -0.02 2.33 16 41 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.05 2.08 4.89 -2.38 -0.01 2.07 16 Total: -1.00 -61.98 315.47 1.10 -60.88 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.96 Total: 19.42 kcal Atomic # 6 Polarization: -36.76 SS G_CDS: 3.14 Total: -33.62 kcal Atomic # 7 Polarization: -69.13 SS G_CDS: -3.78 Total: -72.91 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -1.24 Total: -20.11 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -61.98 1.10 -60.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686241460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.508 kcal (2) G-P(sol) polarization free energy of solvation -61.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds