Wall clock time and date at job start Mon Mar 30 2020 08:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50692 * 109.97754 * 2 1 4 4 H 1.08000 * 120.00357 * 238.95266 * 3 2 1 5 5 C 1.37881 * 120.00006 * 58.94438 * 3 2 1 6 6 N 1.31515 * 119.99784 * 0.02562 * 5 3 2 7 7 Si 1.86802 * 120.00191 * 180.02562 * 5 3 2 8 8 H 1.48497 * 109.47134 * 0.02562 * 7 5 3 9 9 H 1.48493 * 109.46976 * 120.00123 * 7 5 3 10 10 H 1.48497 * 109.46980 * 239.99907 * 7 5 3 11 11 C 1.54152 * 109.86648 * 238.94481 * 2 1 3 12 12 C 1.54910 * 104.21356 * 238.67208 * 11 2 1 13 13 C 1.54390 * 102.02534 * 339.69319 * 12 11 2 14 14 C 1.52399 * 110.13107 * 154.99702 * 13 12 11 15 15 C 1.53153 * 109.39786 * 177.92334 * 14 13 12 16 16 N 1.46860 * 109.44253 * 301.95192 * 15 14 13 17 17 C 1.46904 * 110.99897 * 186.46119 * 16 15 14 18 18 C 1.53001 * 117.51936 * 111.28162 * 17 16 15 19 19 C 1.52999 * 60.00190 * 107.47915 * 18 17 16 20 20 C 1.46865 * 111.26812 * 62.31441 * 16 15 14 21 21 C 1.52398 * 110.12485 * 277.44967 * 13 12 11 22 22 O 1.43647 * 104.33624 * 36.21928 * 13 12 11 23 23 H 1.08998 * 109.47018 * 181.05514 * 1 2 3 24 24 H 1.08995 * 109.46910 * 301.05477 * 1 2 3 25 25 H 1.09001 * 109.47193 * 61.05490 * 1 2 3 26 26 H 0.97002 * 120.00219 * 179.97438 * 6 5 3 27 27 H 1.08998 * 110.47813 * 119.99562 * 11 2 1 28 28 H 1.08999 * 110.48269 * 357.35600 * 11 2 1 29 29 H 1.08993 * 110.92321 * 221.50674 * 12 11 2 30 30 H 1.09004 * 110.91582 * 97.87083 * 12 11 2 31 31 H 1.09000 * 109.48153 * 57.94748 * 14 13 12 32 32 H 1.08997 * 109.49242 * 297.91389 * 14 13 12 33 33 H 1.08997 * 109.47599 * 181.95337 * 15 14 13 34 34 H 1.09006 * 109.47940 * 61.94515 * 15 14 13 35 35 H 1.09002 * 115.55029 * 325.57898 * 17 16 15 36 36 H 1.09001 * 117.49733 * 214.97346 * 18 17 16 37 37 H 1.08995 * 117.49577 * 359.97438 * 18 17 16 38 38 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 39 39 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 40 40 H 1.09002 * 109.47529 * 57.66366 * 20 16 15 41 41 H 1.08998 * 109.47956 * 177.68804 * 20 16 15 42 42 H 1.08994 * 109.48536 * 302.03908 * 21 13 12 43 43 H 1.09004 * 109.48039 * 62.06909 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0448 1.4162 0.0000 4 1 2.6827 1.7590 -0.8013 5 6 1.7015 2.2746 1.0229 6 7 0.9250 1.8572 1.9989 7 14 2.3391 4.0305 1.0226 8 1 3.1861 4.2493 -0.1773 9 1 1.1923 4.9735 0.9971 10 1 3.1452 4.2645 2.2476 11 6 2.0539 -0.7479 -1.2420 12 6 2.9174 -1.8944 -0.6594 13 6 3.2213 -1.3773 0.7632 14 6 3.5096 -2.5474 1.6961 15 6 3.8592 -2.0137 3.0884 16 7 5.0179 -1.1166 2.9913 17 6 5.4783 -0.7051 4.3243 18 6 6.8325 -1.2354 4.7995 19 6 6.6847 0.2332 4.3966 20 6 4.7181 0.0522 2.1540 21 6 4.3986 -0.4103 0.7293 22 8 2.0190 -0.6981 1.1591 23 1 -0.3633 -1.0275 0.0189 24 1 -0.3633 0.5301 0.8803 25 1 -0.3633 0.4974 -0.8993 26 1 0.6837 2.4609 2.7187 27 1 2.6636 -0.0858 -1.8568 28 1 1.2242 -1.1521 -1.8219 29 1 3.8360 -2.0196 -1.2325 30 1 2.3533 -2.8264 -0.6225 31 1 4.3484 -3.1245 1.3069 32 1 2.6286 -3.1857 1.7620 33 1 4.0995 -2.8478 3.7476 34 1 3.0078 -1.4653 3.4918 35 1 4.6965 -0.5783 5.0733 36 1 6.9416 -1.4576 5.8610 37 1 7.3819 -1.8902 4.1231 38 1 7.1370 0.5448 3.4551 39 1 6.6966 0.9772 5.1931 40 1 3.8594 0.5830 2.5651 41 1 5.5817 0.7170 2.1353 42 1 5.2689 -0.9116 0.3060 43 1 4.1422 0.4532 0.1155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686241496.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:08:00 Heat of formation + Delta-G solvation = -17.646569 kcal Electronic energy + Delta-G solvation = -22274.649927 eV Core-core repulsion = 19320.325607 eV Total energy + Delta-G solvation = -2954.324319 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.57505 -37.75910 -35.04583 -32.80148 -31.02524 -30.67484 -30.17399 -27.78394 -25.29007 -23.62141 -22.95492 -21.71078 -21.23286 -20.07245 -19.46251 -18.35101 -16.49118 -16.29312 -14.92214 -14.65407 -14.41647 -14.23547 -14.00280 -13.47933 -13.35761 -12.75093 -12.52032 -12.32246 -11.91952 -11.56050 -11.40656 -11.30391 -11.15915 -10.96399 -10.87910 -10.77984 -10.57878 -10.48836 -10.34434 -10.17858 -10.09210 -9.92189 -9.76967 -9.38380 -9.13584 -9.05768 -8.42977 -7.86429 -7.71247 -5.92551 -4.06896 3.27117 3.36634 3.39105 4.02149 4.25453 4.42051 5.02699 5.16306 5.20053 5.36985 5.42495 5.47552 5.57125 5.73652 5.79990 5.84570 5.94130 5.96823 6.01901 6.10579 6.21235 6.24865 6.33014 6.33977 6.38953 6.50867 6.58314 6.64065 6.70605 6.77821 6.86312 6.89489 6.97892 7.03177 7.16437 7.23395 7.54541 7.67888 7.71273 7.81160 8.09183 8.38964 8.69068 9.02747 9.62212 11.08073 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.016752 B = 0.009157 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.034130 B = 3057.071229 C = 4110.193862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.226 3.774 3 C -0.531 4.531 4 H 0.056 0.944 5 C 0.084 3.916 6 N -0.858 5.858 7 Si 0.876 3.124 8 H -0.273 1.273 9 H -0.285 1.285 10 H -0.284 1.284 11 C -0.142 4.142 12 C -0.146 4.146 13 C 0.111 3.889 14 C -0.098 4.098 15 C 0.066 3.934 16 N -0.514 5.514 17 C 0.013 3.987 18 C -0.168 4.168 19 C -0.178 4.178 20 C 0.067 3.933 21 C -0.122 4.122 22 O -0.342 6.342 23 H 0.012 0.988 24 H 0.089 0.911 25 H 0.035 0.965 26 H 0.256 0.744 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.047 0.953 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.121 -6.255 1.572 9.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.188 3.812 3 C -0.569 4.569 4 H 0.074 0.926 5 C -0.120 4.120 6 N -0.495 5.495 7 Si 0.704 3.296 8 H -0.197 1.197 9 H -0.211 1.211 10 H -0.210 1.210 11 C -0.180 4.180 12 C -0.183 4.183 13 C 0.071 3.929 14 C -0.136 4.136 15 C -0.061 4.061 16 N -0.239 5.239 17 C -0.096 4.096 18 C -0.206 4.206 19 C -0.216 4.216 20 C -0.059 4.059 21 C -0.160 4.160 22 O -0.262 6.262 23 H 0.031 0.969 24 H 0.108 0.892 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.282 -6.451 1.709 9.877 hybrid contribution -0.190 1.521 0.210 1.547 sum 7.092 -4.930 1.919 8.848 Atomic orbital electron populations 1.21785 0.96763 0.97715 1.02538 1.19620 0.91249 0.90130 0.80190 1.21400 1.31616 0.95486 1.08415 0.92639 1.24912 0.94334 0.97470 0.95334 1.69961 1.34405 1.34646 1.10515 0.86812 0.78919 0.85863 0.78048 1.19745 1.21083 1.21008 1.23094 0.98377 0.96485 1.00067 1.23044 0.99356 0.98453 0.97489 1.21517 0.88734 0.91060 0.91639 1.21458 1.00399 0.96984 0.94774 1.21939 0.91507 0.95514 0.97184 1.61841 1.34742 1.17578 1.09702 1.22359 0.90939 1.03532 0.92794 1.23020 1.00341 0.96643 1.00626 1.23004 1.02388 0.93120 1.03039 1.21944 0.99737 0.90789 0.93468 1.21933 0.96533 1.01054 0.96437 1.88940 1.36330 1.65740 1.35151 0.96877 0.89206 0.94560 0.93359 0.91971 0.93146 0.92204 0.92264 0.91499 0.91653 0.92084 0.93591 0.89750 0.89389 0.88526 0.88469 0.89149 0.92543 0.92405 0.93386 0.88576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.45 37.16 0.31 -2.84 16 2 C 0.23 5.45 0.70 -91.17 -0.06 5.38 16 3 C -0.53 -13.82 5.99 -34.44 -0.21 -14.02 16 4 H 0.06 1.45 7.15 -52.49 -0.38 1.07 16 5 C 0.08 2.24 5.26 -17.82 -0.09 2.15 16 6 N -0.86 -23.85 10.93 55.43 0.61 -23.25 16 7 Si 0.88 20.76 29.54 -169.99 -5.02 15.74 16 8 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 C -0.14 -2.94 5.95 -25.12 -0.15 -3.09 16 12 C -0.15 -2.70 6.04 -25.00 -0.15 -2.85 16 13 C 0.11 2.24 0.68 -90.51 -0.06 2.18 16 14 C -0.10 -1.73 5.11 -26.96 -0.14 -1.87 16 15 C 0.07 1.18 5.35 -3.77 -0.02 1.16 16 16 N -0.51 -9.08 4.79 -226.50 -1.08 -10.17 16 17 C 0.01 0.20 5.30 -67.71 -0.36 -0.15 16 18 C -0.17 -2.16 10.46 -26.73 -0.28 -2.44 16 19 C -0.18 -2.46 9.69 -26.73 -0.26 -2.72 16 20 C 0.07 1.35 5.27 -3.76 -0.02 1.33 16 21 C -0.12 -2.44 4.68 -26.96 -0.13 -2.57 16 22 O -0.34 -8.34 9.30 -35.23 -0.33 -8.67 16 23 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.09 2.41 6.01 -51.93 -0.31 2.09 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.06 1.28 7.39 -51.93 -0.38 0.89 16 28 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 29 H 0.06 1.00 8.01 -51.93 -0.42 0.58 16 30 H 0.06 1.03 8.03 -51.93 -0.42 0.61 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 34 H 0.05 0.95 7.98 -51.93 -0.41 0.53 16 35 H 0.08 1.36 8.08 -51.93 -0.42 0.94 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.10 1.38 7.23 -51.93 -0.38 1.01 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.36 7.98 -51.93 -0.41 0.94 16 41 H 0.06 1.09 6.66 -51.93 -0.35 0.74 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.10 2.14 5.46 -51.93 -0.28 1.86 16 LS Contribution 324.07 15.07 4.88 4.88 Total: -1.00 -27.40 324.07 -10.05 -37.46 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -7.50 Total: 4.36 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -1.61 Total: -20.36 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: -0.48 Total: -33.41 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.33 Total: -8.67 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.40 -10.05 -37.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686241496.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.811 kcal (2) G-P(sol) polarization free energy of solvation -27.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds