Wall clock time and date at job start Mon Mar 30 2020 08:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50692 * 109.97754 * 2 1 4 4 H 1.08000 * 120.00357 * 238.95266 * 3 2 1 5 5 C 1.37881 * 120.00006 * 58.94438 * 3 2 1 6 6 N 1.31515 * 119.99784 * 0.02562 * 5 3 2 7 7 Si 1.86802 * 120.00191 * 180.02562 * 5 3 2 8 8 H 1.48497 * 109.47134 * 0.02562 * 7 5 3 9 9 H 1.48493 * 109.46976 * 120.00123 * 7 5 3 10 10 H 1.48497 * 109.46980 * 239.99907 * 7 5 3 11 11 C 1.54152 * 109.86648 * 238.94481 * 2 1 3 12 12 C 1.54910 * 104.21356 * 238.67208 * 11 2 1 13 13 C 1.54390 * 102.02534 * 339.69319 * 12 11 2 14 14 C 1.52399 * 110.13107 * 154.99702 * 13 12 11 15 15 C 1.53153 * 109.39786 * 177.92334 * 14 13 12 16 16 N 1.46860 * 109.44253 * 301.95192 * 15 14 13 17 17 C 1.46904 * 110.99897 * 186.46119 * 16 15 14 18 18 C 1.53001 * 117.51936 * 111.28162 * 17 16 15 19 19 C 1.52999 * 60.00190 * 107.47915 * 18 17 16 20 20 C 1.46865 * 111.26812 * 62.31441 * 16 15 14 21 21 C 1.52398 * 110.12485 * 277.44967 * 13 12 11 22 22 O 1.43647 * 104.33624 * 36.21928 * 13 12 11 23 23 H 1.08998 * 109.47018 * 181.05514 * 1 2 3 24 24 H 1.08995 * 109.46910 * 301.05477 * 1 2 3 25 25 H 1.09001 * 109.47193 * 61.05490 * 1 2 3 26 26 H 0.97002 * 120.00219 * 179.97438 * 6 5 3 27 27 H 1.08998 * 110.47813 * 119.99562 * 11 2 1 28 28 H 1.08999 * 110.48269 * 357.35600 * 11 2 1 29 29 H 1.08993 * 110.92321 * 221.50674 * 12 11 2 30 30 H 1.09004 * 110.91582 * 97.87083 * 12 11 2 31 31 H 1.09000 * 109.48153 * 57.94748 * 14 13 12 32 32 H 1.08997 * 109.49242 * 297.91389 * 14 13 12 33 33 H 1.08997 * 109.47599 * 181.95337 * 15 14 13 34 34 H 1.09006 * 109.47940 * 61.94515 * 15 14 13 35 35 H 1.09002 * 115.55029 * 325.57898 * 17 16 15 36 36 H 1.09001 * 117.49733 * 214.97346 * 18 17 16 37 37 H 1.08995 * 117.49577 * 359.97438 * 18 17 16 38 38 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 39 39 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 40 40 H 1.09002 * 109.47529 * 57.66366 * 20 16 15 41 41 H 1.08998 * 109.47956 * 177.68804 * 20 16 15 42 42 H 1.08994 * 109.48536 * 302.03908 * 21 13 12 43 43 H 1.09004 * 109.48039 * 62.06909 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0448 1.4162 0.0000 4 1 2.6827 1.7590 -0.8013 5 6 1.7015 2.2746 1.0229 6 7 0.9250 1.8572 1.9989 7 14 2.3391 4.0305 1.0226 8 1 3.1861 4.2493 -0.1773 9 1 1.1923 4.9735 0.9971 10 1 3.1452 4.2645 2.2476 11 6 2.0539 -0.7479 -1.2420 12 6 2.9174 -1.8944 -0.6594 13 6 3.2213 -1.3773 0.7632 14 6 3.5096 -2.5474 1.6961 15 6 3.8592 -2.0137 3.0884 16 7 5.0179 -1.1166 2.9913 17 6 5.4783 -0.7051 4.3243 18 6 6.8325 -1.2354 4.7995 19 6 6.6847 0.2332 4.3966 20 6 4.7181 0.0522 2.1540 21 6 4.3986 -0.4103 0.7293 22 8 2.0190 -0.6981 1.1591 23 1 -0.3633 -1.0275 0.0189 24 1 -0.3633 0.5301 0.8803 25 1 -0.3633 0.4974 -0.8993 26 1 0.6837 2.4609 2.7187 27 1 2.6636 -0.0858 -1.8568 28 1 1.2242 -1.1521 -1.8219 29 1 3.8360 -2.0196 -1.2325 30 1 2.3533 -2.8264 -0.6225 31 1 4.3484 -3.1245 1.3069 32 1 2.6286 -3.1857 1.7620 33 1 4.0995 -2.8478 3.7476 34 1 3.0078 -1.4653 3.4918 35 1 4.6965 -0.5783 5.0733 36 1 6.9416 -1.4576 5.8610 37 1 7.3819 -1.8902 4.1231 38 1 7.1370 0.5448 3.4551 39 1 6.6966 0.9772 5.1931 40 1 3.8594 0.5830 2.5651 41 1 5.5817 0.7170 2.1353 42 1 5.2689 -0.9116 0.3060 43 1 4.1422 0.4532 0.1155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686241496.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:07:59 Heat of formation + Delta-G solvation = -33.117958 kcal Electronic energy + Delta-G solvation = -22275.320816 eV Core-core repulsion = 19320.325607 eV Total energy + Delta-G solvation = -2954.995209 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.16110 -39.15992 -36.48170 -34.66595 -32.70539 -32.38954 -31.70457 -29.43391 -27.29850 -25.22821 -24.36743 -22.88040 -22.72509 -21.44986 -21.21189 -19.98274 -18.40108 -17.66286 -16.70639 -16.07621 -16.01742 -15.81162 -15.47548 -15.22488 -14.98029 -14.23708 -14.14264 -13.87112 -13.41298 -13.25360 -13.10267 -12.94417 -12.83193 -12.56615 -12.50435 -12.33267 -12.28718 -12.18502 -11.92649 -11.78226 -11.67888 -11.40406 -11.09773 -10.92641 -10.86109 -10.73118 -10.45191 -9.67885 -9.20888 -7.96356 -6.14609 1.34513 1.39343 1.46975 2.43254 2.81926 2.98151 3.19917 3.62259 3.95645 3.98140 4.02218 4.09719 4.17964 4.30040 4.36037 4.46891 4.52077 4.60096 4.64858 4.75439 4.78100 4.80815 4.88077 4.95635 5.02738 5.04262 5.06297 5.11049 5.14138 5.18311 5.24883 5.31523 5.33111 5.35622 5.45331 5.59733 5.68352 5.83437 6.13346 6.19337 6.29110 6.39270 6.78859 7.14549 7.57761 9.02871 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.016752 B = 0.009157 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.034130 B = 3057.071229 C = 4110.193862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.213 3.787 3 C -0.531 4.531 4 H 0.049 0.951 5 C 0.042 3.958 6 N -0.886 5.886 7 Si 0.925 3.075 8 H -0.266 1.266 9 H -0.283 1.283 10 H -0.288 1.288 11 C -0.139 4.139 12 C -0.135 4.135 13 C 0.099 3.901 14 C -0.094 4.094 15 C 0.070 3.930 16 N -0.503 5.503 17 C -0.022 4.022 18 C -0.136 4.136 19 C -0.177 4.177 20 C 0.079 3.921 21 C -0.117 4.117 22 O -0.370 6.370 23 H 0.026 0.974 24 H 0.058 0.942 25 H 0.040 0.960 26 H 0.251 0.749 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.005 0.995 35 H 0.073 0.927 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.003 0.997 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.152 -7.818 1.133 12.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.176 3.824 3 C -0.569 4.569 4 H 0.067 0.933 5 C -0.159 4.159 6 N -0.525 5.525 7 Si 0.752 3.248 8 H -0.190 1.190 9 H -0.210 1.210 10 H -0.215 1.215 11 C -0.177 4.177 12 C -0.173 4.173 13 C 0.058 3.942 14 C -0.131 4.131 15 C -0.058 4.058 16 N -0.227 5.227 17 C -0.131 4.131 18 C -0.174 4.174 19 C -0.215 4.215 20 C -0.049 4.049 21 C -0.155 4.155 22 O -0.290 6.290 23 H 0.045 0.955 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.023 0.977 35 H 0.091 0.909 36 H 0.130 0.870 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.022 0.978 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.325 -8.016 1.259 12.361 hybrid contribution -0.806 1.999 0.376 2.188 sum 8.520 -6.017 1.636 10.557 Atomic orbital electron populations 1.21699 0.97370 0.98042 1.01226 1.19684 0.91010 0.89868 0.81873 1.21642 1.30726 0.96819 1.07735 0.93251 1.25478 0.94734 1.00408 0.95316 1.70101 1.35861 1.35413 1.11082 0.86028 0.78380 0.82508 0.77867 1.18968 1.20956 1.21489 1.22994 0.99141 0.97012 0.98583 1.23018 1.00171 0.97989 0.96118 1.21824 0.87276 0.91585 0.93466 1.21468 1.01615 0.96125 0.93924 1.21928 0.90207 0.95776 0.97901 1.61926 1.33911 1.16209 1.10649 1.22491 0.91990 1.06883 0.91772 1.23081 0.96690 0.95579 1.02052 1.23084 1.00715 0.94305 1.03383 1.21733 0.97703 0.91526 0.93925 1.21846 0.97507 1.00295 0.95882 1.88903 1.38171 1.66192 1.35751 0.95543 0.92326 0.94054 0.93922 0.92283 0.91872 0.89778 0.90677 0.88852 0.91149 0.89473 0.97662 0.90944 0.86991 0.87932 0.88899 0.87955 0.97832 0.91749 0.91018 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.15 8.45 71.98 0.61 -5.54 16 2 C 0.21 10.37 0.70 -11.15 -0.01 10.36 16 3 C -0.53 -28.14 5.99 25.60 0.15 -27.98 16 4 H 0.05 2.61 7.15 -2.91 -0.02 2.59 16 5 C 0.04 2.32 5.26 84.66 0.45 2.76 16 6 N -0.89 -51.30 10.93 21.45 0.23 -51.07 16 7 Si 0.93 43.69 29.54 68.60 2.03 45.71 16 8 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 9 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 10 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 11 C -0.14 -5.57 5.95 31.64 0.19 -5.38 16 12 C -0.14 -4.64 6.04 31.72 0.19 -4.45 16 13 C 0.10 3.86 0.68 -10.72 -0.01 3.85 16 14 C -0.09 -3.11 5.11 30.45 0.16 -2.95 16 15 C 0.07 2.43 5.35 86.36 0.46 2.89 16 16 N -0.50 -17.29 4.79 -870.52 -4.17 -21.46 16 17 C -0.02 -0.68 5.30 44.92 0.24 -0.44 16 18 C -0.14 -3.09 10.46 30.59 0.32 -2.77 16 19 C -0.18 -4.59 9.69 30.60 0.30 -4.30 16 20 C 0.08 3.17 5.27 86.36 0.46 3.63 16 21 C -0.12 -4.62 4.68 30.45 0.14 -4.47 16 22 O -0.37 -18.29 9.30 -148.98 -1.39 -19.68 16 23 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.06 3.24 6.01 -2.39 -0.01 3.22 16 25 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 27 H 0.06 2.36 7.39 -2.39 -0.02 2.34 16 28 H 0.06 2.32 7.70 -2.39 -0.02 2.30 16 29 H 0.08 2.48 8.01 -2.39 -0.02 2.46 16 30 H 0.07 2.34 8.03 -2.39 -0.02 2.32 16 31 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.09 2.56 8.12 -2.39 -0.02 2.54 16 34 H 0.00 0.21 7.98 -2.38 -0.02 0.20 16 35 H 0.07 2.37 8.08 -2.39 -0.02 2.35 16 36 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.09 2.49 7.23 -2.39 -0.02 2.47 16 39 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 40 H 0.00 0.17 7.98 -2.39 -0.02 0.15 16 41 H 0.06 2.44 6.66 -2.39 -0.02 2.42 16 42 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.07 3.09 5.46 -2.39 -0.01 3.07 16 Total: -1.00 -60.80 324.07 1.31 -59.49 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.96 Total: 21.80 kcal Atomic # 6 Polarization: -38.44 SS G_CDS: 3.64 Total: -34.80 kcal Atomic # 7 Polarization: -68.59 SS G_CDS: -3.93 Total: -72.53 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -1.39 Total: -19.68 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -60.80 1.31 -59.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686241496.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.371 kcal (2) G-P(sol) polarization free energy of solvation -60.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds