Wall clock time and date at job start Mon Mar 30 2020 08:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.82487 * 2 1 4 4 H 1.08000 * 120.00005 * 239.10511 * 3 2 1 5 5 C 1.37878 * 119.99914 * 59.10586 * 3 2 1 6 6 N 1.31517 * 120.00421 * 0.02562 * 5 3 2 7 7 Si 1.86799 * 119.99842 * 179.97438 * 5 3 2 8 8 H 1.48499 * 109.47172 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.46939 * 120.00214 * 7 5 3 10 10 H 1.48507 * 109.47385 * 240.00142 * 7 5 3 11 11 C 1.54400 * 109.83314 * 239.10561 * 2 1 3 12 12 C 1.55369 * 102.29886 * 219.06935 * 11 2 1 13 13 C 1.54579 * 100.90688 * 33.74450 * 12 11 2 14 14 C 1.52413 * 109.71866 * 205.03421 * 13 12 11 15 15 C 1.53670 * 110.64354 * 291.29598 * 14 13 12 16 16 N 1.45656 * 107.86393 * 303.47609 * 15 14 13 17 17 C 1.46594 * 116.63443 * 185.03933 * 16 15 14 18 18 C 1.54937 * 105.81350 * 208.05463 * 17 16 15 19 19 C 1.55413 * 104.81265 * 3.36884 * 18 17 16 20 20 C 1.48926 * 109.57718 * 65.85653 * 16 15 14 21 21 H 1.09007 * 111.49849 * 52.85344 * 20 16 15 22 22 C 1.52518 * 107.14883 * 290.05458 * 20 16 15 23 23 O 1.43262 * 105.60876 * 324.03925 * 13 12 11 24 24 H 1.08999 * 109.47406 * 180.88960 * 1 2 3 25 25 H 1.08995 * 109.47601 * 300.89221 * 1 2 3 26 26 H 1.09006 * 109.47177 * 60.89285 * 1 2 3 27 27 H 0.96995 * 119.99989 * 180.02562 * 6 5 3 28 28 H 1.09009 * 110.84138 * 100.86970 * 11 2 1 29 29 H 1.08997 * 111.01961 * 337.34878 * 11 2 1 30 30 H 1.09000 * 111.12791 * 275.84366 * 12 11 2 31 31 H 1.08998 * 111.17337 * 151.67269 * 12 11 2 32 32 H 1.09001 * 109.24774 * 170.99469 * 14 13 12 33 33 H 1.08998 * 109.24563 * 51.59462 * 14 13 12 34 34 H 1.08998 * 109.78097 * 183.88090 * 15 14 13 35 35 H 1.09003 * 109.77800 * 63.06630 * 15 14 13 36 36 H 1.09005 * 110.18091 * 327.14151 * 17 16 15 37 37 H 1.09000 * 110.18169 * 88.96662 * 17 16 15 38 38 H 1.08997 * 110.37488 * 122.20357 * 18 17 16 39 39 H 1.09004 * 110.37024 * 244.43135 * 18 17 16 40 40 H 1.09000 * 110.97025 * 141.58527 * 19 18 17 41 41 H 1.08995 * 110.97056 * 265.30943 * 19 18 17 42 42 H 1.08999 * 109.80136 * 181.74579 * 22 20 16 43 43 H 1.08996 * 109.79737 * 302.54969 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 1 2.6760 1.7628 -0.8026 5 6 1.6981 2.2741 1.0247 6 7 0.9254 1.8538 2.0023 7 14 2.3322 4.0312 1.0250 8 1 3.1763 4.2531 -0.1765 9 1 1.1835 4.9720 1.0030 10 1 3.1406 4.2655 2.2485 11 6 2.0539 -0.7458 -1.2463 12 6 3.2748 -1.5213 -0.6791 13 6 2.7827 -1.8350 0.7523 14 6 3.9791 -2.0276 1.6767 15 6 4.7366 -3.3165 1.3211 16 7 3.7927 -4.4235 1.3920 17 6 4.3417 -5.7687 1.1972 18 6 3.1847 -6.6161 0.6107 19 6 2.0122 -5.6131 0.4250 20 6 2.7607 -4.2682 0.3296 21 1 3.2150 -4.1353 -0.6523 22 6 1.8892 -3.0788 0.7197 23 8 2.0180 -0.6928 1.1560 24 1 -0.3634 -1.0275 0.0160 25 1 -0.3634 0.5276 0.8818 26 1 -0.3634 0.4999 -0.8979 27 1 0.6838 2.4564 2.7229 28 1 2.3662 -0.0411 -2.0172 29 1 1.3032 -1.4344 -1.6341 30 1 4.1650 -0.8926 -0.6595 31 1 3.4556 -2.4370 -1.2420 32 1 3.6304 -2.0887 2.7077 33 1 4.6519 -1.1760 1.5757 34 1 5.5469 -3.4763 2.0324 35 1 5.1407 -3.2402 0.3116 36 1 5.1765 -5.7364 0.4971 37 1 4.6661 -6.1843 2.1512 38 1 3.4753 -7.0421 -0.3496 39 1 2.9032 -7.4068 1.3062 40 1 1.4636 -5.8201 -0.4938 41 1 1.3453 -5.6286 1.2870 42 1 1.0965 -2.9448 -0.0163 43 1 1.4537 -3.2475 1.7046 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686241789.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:07:39 Heat of formation + Delta-G solvation = -42.065855 kcal Electronic energy + Delta-G solvation = -22044.338022 eV Core-core repulsion = 19088.954803 eV Total energy + Delta-G solvation = -2955.383219 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.18096 -38.01133 -34.18665 -32.58758 -31.51674 -30.82754 -29.28456 -28.04517 -26.11888 -25.03808 -23.04229 -22.08807 -20.97617 -20.70525 -19.27931 -18.22778 -16.63123 -15.78682 -15.43978 -14.87259 -14.66090 -14.46710 -13.98233 -13.69673 -13.15297 -12.69740 -12.61984 -12.35816 -12.26697 -11.96716 -11.61615 -11.36765 -11.19999 -11.01778 -10.91488 -10.84260 -10.80659 -10.63580 -10.52938 -10.45479 -10.27949 -10.17289 -9.94455 -9.50578 -9.22518 -9.00917 -8.42450 -8.14382 -7.75465 -5.88363 -4.04342 3.32262 3.40712 3.43649 4.12823 4.47057 4.62939 4.79148 4.91265 4.99159 5.30229 5.35012 5.42509 5.46326 5.57301 5.60798 5.64922 5.73761 5.76794 5.83194 5.88164 5.97099 6.02035 6.10672 6.19426 6.23617 6.27132 6.42365 6.48573 6.61278 6.65671 6.72911 6.87122 6.93057 6.99767 7.06895 7.19109 7.22388 7.41995 7.48628 7.84541 8.17941 8.45598 8.74304 9.15419 9.66555 11.13298 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.035318 B = 0.005728 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.614602 B = 4887.518615 C = 5151.310144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.230 3.770 3 C -0.529 4.529 4 H 0.057 0.943 5 C 0.081 3.919 6 N -0.860 5.860 7 Si 0.885 3.115 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.284 1.284 11 C -0.141 4.141 12 C -0.143 4.143 13 C 0.109 3.891 14 C -0.101 4.101 15 C 0.063 3.937 16 N -0.531 5.531 17 C 0.046 3.954 18 C -0.128 4.128 19 C -0.117 4.117 20 C 0.066 3.934 21 H 0.056 0.944 22 C -0.110 4.110 23 O -0.340 6.340 24 H 0.011 0.989 25 H 0.090 0.910 26 H 0.033 0.967 27 H 0.258 0.742 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.031 0.969 36 H 0.034 0.966 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.562 -13.730 -3.304 14.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.193 3.807 3 C -0.567 4.567 4 H 0.075 0.925 5 C -0.124 4.124 6 N -0.497 5.497 7 Si 0.713 3.287 8 H -0.199 1.199 9 H -0.210 1.210 10 H -0.210 1.210 11 C -0.179 4.179 12 C -0.181 4.181 13 C 0.068 3.932 14 C -0.139 4.139 15 C -0.065 4.065 16 N -0.256 5.256 17 C -0.082 4.082 18 C -0.166 4.166 19 C -0.155 4.155 20 C -0.042 4.042 21 H 0.074 0.926 22 C -0.148 4.148 23 O -0.259 6.259 24 H 0.030 0.970 25 H 0.108 0.892 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.260 -13.566 -2.412 14.422 hybrid contribution 0.885 0.886 -0.976 1.587 sum 5.145 -12.680 -3.388 14.097 Atomic orbital electron populations 1.22011 0.97674 0.97569 1.02523 1.19615 0.90723 0.90374 0.80018 1.21266 1.32204 0.94743 1.08506 0.92528 1.24984 0.94266 0.97942 0.95201 1.69966 1.34469 1.34828 1.10397 0.86678 0.78796 0.85306 0.77963 1.19868 1.21034 1.20976 1.23205 0.96138 0.98283 1.00258 1.23232 0.99162 0.98925 0.96740 1.21677 0.90771 0.88383 0.92356 1.21508 0.96391 0.95236 1.00755 1.21985 0.94269 0.90906 0.99333 1.63375 1.14645 1.00875 1.46704 1.22586 0.96011 0.89819 0.99813 1.22657 0.95441 0.97999 1.00470 1.22463 0.97029 0.93984 1.01993 1.22828 0.93044 0.95347 0.92959 0.92586 1.21872 0.97572 0.93185 1.02166 1.88745 1.68412 1.36736 1.32009 0.96998 0.89179 0.94781 0.93220 0.91707 0.93257 0.91365 0.92642 0.91032 0.91223 0.91167 0.95079 0.94773 0.90795 0.91873 0.91259 0.91402 0.90474 0.91728 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 8.53 37.16 0.32 -3.14 16 2 C 0.23 5.76 0.81 -91.04 -0.07 5.69 16 3 C -0.53 -14.62 8.23 -34.44 -0.28 -14.90 16 4 H 0.06 1.55 7.48 -52.49 -0.39 1.16 16 5 C 0.08 2.26 5.26 -17.82 -0.09 2.17 16 6 N -0.86 -24.93 10.92 55.43 0.61 -24.33 16 7 Si 0.88 21.37 29.54 -169.99 -5.02 16.35 16 8 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 C -0.14 -2.96 5.65 -24.74 -0.14 -3.10 16 12 C -0.14 -2.72 5.23 -24.64 -0.13 -2.84 16 13 C 0.11 2.19 0.90 -89.99 -0.08 2.11 16 14 C -0.10 -1.85 5.19 -26.68 -0.14 -1.99 16 15 C 0.06 0.94 5.62 -4.15 -0.02 0.92 16 16 N -0.53 -7.73 4.70 -224.13 -1.05 -8.79 16 17 C 0.05 0.54 6.84 -2.97 -0.02 0.52 16 18 C -0.13 -1.33 6.99 -24.43 -0.17 -1.50 16 19 C -0.12 -1.42 6.59 -24.82 -0.16 -1.58 16 20 C 0.07 0.96 2.43 -66.20 -0.16 0.80 16 21 H 0.06 0.83 6.28 -51.92 -0.33 0.50 16 22 C -0.11 -1.96 4.74 -26.88 -0.13 -2.08 16 23 O -0.34 -8.68 9.55 -35.23 -0.34 -9.02 16 24 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.09 2.47 6.01 -51.93 -0.31 2.16 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.06 1.35 7.61 -51.92 -0.39 0.96 16 29 H 0.05 0.95 7.38 -51.93 -0.38 0.57 16 30 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 31 H 0.06 0.92 6.08 -51.93 -0.32 0.60 16 32 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.07 1.31 8.00 -51.93 -0.42 0.90 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.03 0.45 7.62 -51.93 -0.40 0.06 16 36 H 0.03 0.38 8.03 -51.93 -0.42 -0.03 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 42 H 0.06 1.17 7.28 -51.93 -0.38 0.79 16 43 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 318.43 15.07 4.80 4.80 Total: -1.00 -29.41 318.43 -9.80 -39.20 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.50 Total: 0.71 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -1.29 Total: -18.94 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: -0.45 Total: -33.11 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.34 Total: -9.02 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.41 -9.80 -39.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686241789.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.862 kcal (2) G-P(sol) polarization free energy of solvation -29.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds