Wall clock time and date at job start Mon Mar 30 2020 08:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.82487 * 2 1 4 4 H 1.08000 * 120.00005 * 239.10511 * 3 2 1 5 5 C 1.37878 * 119.99914 * 59.10586 * 3 2 1 6 6 N 1.31517 * 120.00421 * 0.02562 * 5 3 2 7 7 Si 1.86799 * 119.99842 * 179.97438 * 5 3 2 8 8 H 1.48499 * 109.47172 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.46939 * 120.00214 * 7 5 3 10 10 H 1.48507 * 109.47385 * 240.00142 * 7 5 3 11 11 C 1.54400 * 109.83314 * 239.10561 * 2 1 3 12 12 C 1.55369 * 102.29886 * 219.06935 * 11 2 1 13 13 C 1.54579 * 100.90688 * 33.74450 * 12 11 2 14 14 C 1.52413 * 109.71866 * 205.03421 * 13 12 11 15 15 C 1.53670 * 110.64354 * 291.29598 * 14 13 12 16 16 N 1.45656 * 107.86393 * 303.47609 * 15 14 13 17 17 C 1.46594 * 116.63443 * 185.03933 * 16 15 14 18 18 C 1.54937 * 105.81350 * 208.05463 * 17 16 15 19 19 C 1.55413 * 104.81265 * 3.36884 * 18 17 16 20 20 C 1.48926 * 109.57718 * 65.85653 * 16 15 14 21 21 H 1.09007 * 111.49849 * 52.85344 * 20 16 15 22 22 C 1.52518 * 107.14883 * 290.05458 * 20 16 15 23 23 O 1.43262 * 105.60876 * 324.03925 * 13 12 11 24 24 H 1.08999 * 109.47406 * 180.88960 * 1 2 3 25 25 H 1.08995 * 109.47601 * 300.89221 * 1 2 3 26 26 H 1.09006 * 109.47177 * 60.89285 * 1 2 3 27 27 H 0.96995 * 119.99989 * 180.02562 * 6 5 3 28 28 H 1.09009 * 110.84138 * 100.86970 * 11 2 1 29 29 H 1.08997 * 111.01961 * 337.34878 * 11 2 1 30 30 H 1.09000 * 111.12791 * 275.84366 * 12 11 2 31 31 H 1.08998 * 111.17337 * 151.67269 * 12 11 2 32 32 H 1.09001 * 109.24774 * 170.99469 * 14 13 12 33 33 H 1.08998 * 109.24563 * 51.59462 * 14 13 12 34 34 H 1.08998 * 109.78097 * 183.88090 * 15 14 13 35 35 H 1.09003 * 109.77800 * 63.06630 * 15 14 13 36 36 H 1.09005 * 110.18091 * 327.14151 * 17 16 15 37 37 H 1.09000 * 110.18169 * 88.96662 * 17 16 15 38 38 H 1.08997 * 110.37488 * 122.20357 * 18 17 16 39 39 H 1.09004 * 110.37024 * 244.43135 * 18 17 16 40 40 H 1.09000 * 110.97025 * 141.58527 * 19 18 17 41 41 H 1.08995 * 110.97056 * 265.30943 * 19 18 17 42 42 H 1.08999 * 109.80136 * 181.74579 * 22 20 16 43 43 H 1.08996 * 109.79737 * 302.54969 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 1 2.6760 1.7628 -0.8026 5 6 1.6981 2.2741 1.0247 6 7 0.9254 1.8538 2.0023 7 14 2.3322 4.0312 1.0250 8 1 3.1763 4.2531 -0.1765 9 1 1.1835 4.9720 1.0030 10 1 3.1406 4.2655 2.2485 11 6 2.0539 -0.7458 -1.2463 12 6 3.2748 -1.5213 -0.6791 13 6 2.7827 -1.8350 0.7523 14 6 3.9791 -2.0276 1.6767 15 6 4.7366 -3.3165 1.3211 16 7 3.7927 -4.4235 1.3920 17 6 4.3417 -5.7687 1.1972 18 6 3.1847 -6.6161 0.6107 19 6 2.0122 -5.6131 0.4250 20 6 2.7607 -4.2682 0.3296 21 1 3.2150 -4.1353 -0.6523 22 6 1.8892 -3.0788 0.7197 23 8 2.0180 -0.6928 1.1560 24 1 -0.3634 -1.0275 0.0160 25 1 -0.3634 0.5276 0.8818 26 1 -0.3634 0.4999 -0.8979 27 1 0.6838 2.4564 2.7229 28 1 2.3662 -0.0411 -2.0172 29 1 1.3032 -1.4344 -1.6341 30 1 4.1650 -0.8926 -0.6595 31 1 3.4556 -2.4370 -1.2420 32 1 3.6304 -2.0887 2.7077 33 1 4.6519 -1.1760 1.5757 34 1 5.5469 -3.4763 2.0324 35 1 5.1407 -3.2402 0.3116 36 1 5.1765 -5.7364 0.4971 37 1 4.6661 -6.1843 2.1512 38 1 3.4753 -7.0421 -0.3496 39 1 2.9032 -7.4068 1.3062 40 1 1.4636 -5.8201 -0.4938 41 1 1.3453 -5.6286 1.2870 42 1 1.0965 -2.9448 -0.0163 43 1 1.4537 -3.2475 1.7046 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686241789.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:07:38 Heat of formation + Delta-G solvation = -59.743534 kcal Electronic energy + Delta-G solvation = -22045.104584 eV Core-core repulsion = 19088.954803 eV Total energy + Delta-G solvation = -2956.149781 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.54913 -39.47140 -35.72422 -34.27348 -32.98350 -32.60228 -30.68058 -29.47256 -27.52860 -26.99834 -24.53510 -23.52893 -22.19171 -21.72467 -21.07632 -19.67125 -18.62540 -17.00285 -16.62090 -16.53521 -16.20151 -15.94712 -15.39587 -15.26451 -14.75213 -14.23763 -14.06712 -13.72620 -13.58401 -13.44552 -13.18338 -13.13778 -12.78675 -12.59212 -12.40144 -12.24097 -12.20729 -12.10868 -11.99948 -11.91354 -11.85778 -11.78729 -11.38470 -11.12994 -10.88880 -10.81723 -10.53829 -9.62512 -9.21985 -7.98956 -6.21939 1.39238 1.41501 1.51808 2.44330 3.03238 3.11750 3.49551 3.65105 3.77702 4.01018 4.06791 4.09840 4.20710 4.21770 4.33804 4.40919 4.48272 4.52110 4.63870 4.73061 4.76625 4.82944 4.88099 4.94033 4.96274 5.04456 5.06756 5.08381 5.09546 5.11132 5.13653 5.29609 5.36374 5.39538 5.45765 5.52430 5.58308 5.71232 6.07740 6.14830 6.36612 6.39970 6.73086 7.24644 7.54549 9.01412 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.035318 B = 0.005728 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.614602 B = 4887.518615 C = 5151.310144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.217 3.783 3 C -0.546 4.546 4 H 0.052 0.948 5 C 0.032 3.968 6 N -0.891 5.891 7 Si 0.946 3.054 8 H -0.267 1.267 9 H -0.279 1.279 10 H -0.285 1.285 11 C -0.136 4.136 12 C -0.130 4.130 13 C 0.096 3.904 14 C -0.098 4.098 15 C 0.074 3.926 16 N -0.548 5.548 17 C 0.044 3.956 18 C -0.120 4.120 19 C -0.115 4.115 20 C 0.069 3.931 21 H 0.064 0.936 22 C -0.101 4.101 23 O -0.379 6.379 24 H 0.026 0.974 25 H 0.057 0.943 26 H 0.039 0.961 27 H 0.256 0.744 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.041 0.959 36 H 0.045 0.955 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.775 -15.646 -4.688 17.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.180 3.820 3 C -0.584 4.584 4 H 0.070 0.930 5 C -0.170 4.170 6 N -0.528 5.528 7 Si 0.772 3.228 8 H -0.191 1.191 9 H -0.204 1.204 10 H -0.211 1.211 11 C -0.174 4.174 12 C -0.167 4.167 13 C 0.056 3.944 14 C -0.137 4.137 15 C -0.054 4.054 16 N -0.274 5.274 17 C -0.084 4.084 18 C -0.158 4.158 19 C -0.154 4.154 20 C -0.038 4.038 21 H 0.082 0.918 22 C -0.139 4.139 23 O -0.299 6.299 24 H 0.045 0.955 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.480 -15.495 -3.808 16.871 hybrid contribution 0.492 1.463 -0.507 1.625 sum 5.973 -14.032 -4.315 15.849 Atomic orbital electron populations 1.21898 0.98057 0.98011 1.01133 1.19671 0.90642 0.89987 0.81724 1.21641 1.31892 0.96594 1.08259 0.93027 1.25713 0.94571 1.01711 0.94997 1.70121 1.35716 1.36006 1.10990 0.85717 0.78321 0.80878 0.77886 1.19126 1.20424 1.21101 1.23107 0.97313 0.98454 0.98504 1.23149 0.97798 0.99784 0.96019 1.22018 0.91253 0.87731 0.93367 1.21473 0.95912 0.97082 0.99188 1.21842 0.94046 0.89254 1.00254 1.63311 1.14939 1.02075 1.47072 1.22692 0.96827 0.88090 1.00743 1.22653 0.93847 0.97523 1.01743 1.22461 0.97513 0.92954 1.02428 1.22763 0.92913 0.95083 0.93087 0.91846 1.21717 0.97566 0.93727 1.00871 1.88667 1.69400 1.38848 1.32962 0.95462 0.92427 0.94241 0.93464 0.91820 0.91441 0.92279 0.89436 0.93315 0.92589 0.89580 0.94041 0.93629 0.90093 0.90002 0.89990 0.89797 0.91521 0.92213 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.69 8.53 71.98 0.61 -6.08 16 2 C 0.22 11.02 0.81 -11.07 -0.01 11.02 16 3 C -0.55 -30.64 8.23 25.60 0.21 -30.43 16 4 H 0.05 2.86 7.48 -2.91 -0.02 2.83 16 5 C 0.03 1.81 5.26 84.65 0.45 2.26 16 6 N -0.89 -53.29 10.92 21.45 0.23 -53.06 16 7 Si 0.95 44.64 29.54 68.60 2.03 46.66 16 8 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 9 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 10 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 11 C -0.14 -5.58 5.65 31.88 0.18 -5.40 16 12 C -0.13 -4.76 5.23 31.95 0.17 -4.59 16 13 C 0.10 3.87 0.90 -10.39 -0.01 3.86 16 14 C -0.10 -3.64 5.19 30.63 0.16 -3.48 16 15 C 0.07 2.07 5.62 86.76 0.49 2.56 16 16 N -0.55 -14.71 4.70 -863.03 -4.05 -18.76 16 17 C 0.04 0.87 6.84 87.02 0.60 1.47 16 18 C -0.12 -2.02 6.99 32.09 0.22 -1.79 16 19 C -0.12 -2.46 6.59 31.83 0.21 -2.25 16 20 C 0.07 1.85 2.43 44.77 0.11 1.96 16 21 H 0.06 1.63 6.28 -2.38 -0.01 1.61 16 22 C -0.10 -3.52 4.74 30.50 0.14 -3.38 16 23 O -0.38 -19.88 9.55 -148.98 -1.42 -21.30 16 24 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.06 3.27 6.01 -2.39 -0.01 3.25 16 26 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 27 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.06 2.59 7.61 -2.38 -0.02 2.58 16 29 H 0.07 2.49 7.38 -2.39 -0.02 2.47 16 30 H 0.06 2.25 7.93 -2.39 -0.02 2.23 16 31 H 0.09 2.62 6.08 -2.39 -0.01 2.61 16 32 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.06 2.16 8.00 -2.39 -0.02 2.14 16 34 H 0.09 2.12 8.14 -2.39 -0.02 2.11 16 35 H 0.04 1.08 7.62 -2.39 -0.02 1.06 16 36 H 0.05 0.83 8.03 -2.38 -0.02 0.81 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.56 8.11 -2.39 -0.02 1.54 16 42 H 0.06 2.11 7.28 -2.39 -0.02 2.09 16 43 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -64.76 318.43 1.27 -63.49 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.96 Total: 17.25 kcal Atomic # 6 Polarization: -37.81 SS G_CDS: 3.53 Total: -34.28 kcal Atomic # 7 Polarization: -68.00 SS G_CDS: -3.82 Total: -71.82 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -1.42 Total: -21.30 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -64.76 1.27 -63.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686241789.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.744 kcal (2) G-P(sol) polarization free energy of solvation -64.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds