Wall clock time and date at job start Mon Mar 30 2020 06:20:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53001 * 109.47367 * 2 1
4 4 O 1.42902 * 109.47248 * 180.02562 * 3 2 1
5 5 C 1.35747 * 117.00043 * 179.97438 * 4 3 2
6 6 N 1.32266 * 120.11900 * 0.33156 * 5 4 3
7 7 C 1.32413 * 120.01697 * 180.29865 * 6 5 4
8 8 C 1.37956 * 120.26286 * 359.66362 * 7 6 5
9 9 N 1.32391 * 120.23106 * 0.02562 * 8 7 6
10 10 C 1.32464 * 119.97743 * 0.02562 * 9 8 7
11 11 N 1.39183 * 120.12895 * 180.02562 * 10 9 8
12 12 C 1.46897 * 110.99996 * 108.34041 * 11 10 9
13 13 C 1.46910 * 110.99811 * 344.38463 * 11 10 9
14 14 H 1.08996 * 109.46765 * 312.32062 * 13 11 10
15 15 C 1.52994 * 109.47053 * 192.31873 * 13 11 10
16 16 C 1.50701 * 109.46638 * 72.32028 * 13 11 10
17 17 H 1.07999 * 120.00529 * 359.97438 * 16 13 11
18 18 C 1.37878 * 119.99556 * 179.72481 * 16 13 11
19 19 N 1.31516 * 120.00102 * 0.27737 * 18 16 13
20 20 Si 1.86799 * 119.99840 * 180.27616 * 18 16 13
21 21 H 1.48494 * 109.47343 * 359.97438 * 20 18 16
22 22 H 1.48502 * 109.47103 * 120.00051 * 20 18 16
23 23 H 1.48509 * 109.46964 * 239.99761 * 20 18 16
24 24 H 1.09000 * 109.47550 * 180.02562 * 1 2 3
25 25 H 1.09003 * 109.47379 * 300.00229 * 1 2 3
26 26 H 1.08999 * 109.47553 * 60.00057 * 1 2 3
27 27 H 1.09006 * 109.47107 * 239.99321 * 2 1 3
28 28 H 1.09003 * 109.47275 * 120.00381 * 2 1 3
29 29 H 1.08990 * 109.47250 * 59.99818 * 3 2 1
30 30 H 1.09002 * 109.46643 * 299.99672 * 3 2 1
31 31 H 1.08006 * 119.87003 * 179.68635 * 7 6 5
32 32 H 1.07996 * 119.88465 * 180.02562 * 8 7 6
33 33 H 1.09009 * 109.46887 * 296.04367 * 12 11 10
34 34 H 1.08994 * 109.47465 * 56.04419 * 12 11 10
35 35 H 1.09001 * 109.47193 * 176.05171 * 12 11 10
36 36 H 1.09003 * 109.46948 * 301.97604 * 15 13 11
37 37 H 1.08998 * 109.47443 * 61.97524 * 15 13 11
38 38 H 1.08993 * 109.47229 * 181.97746 * 15 13 11
39 39 H 0.96996 * 119.99936 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 3.4690 1.4425 -0.0006
5 6 4.0853 2.6520 -0.0012
6 7 3.3673 3.7627 0.0054
7 6 3.9706 4.9415 -0.0012
8 6 5.3480 5.0175 -0.0080
9 7 6.0766 3.9121 -0.0084
10 6 5.4829 2.7280 -0.0029
11 7 6.2458 1.5639 -0.0028
12 6 6.1787 0.8906 1.3010
13 6 7.6377 1.8467 -0.3783
14 1 7.6532 2.4735 -1.2699
15 6 8.3653 0.5321 -0.6663
16 6 8.3270 2.5651 0.7530
17 1 7.7854 2.7895 1.6600
18 6 9.6508 2.9312 0.6321
19 7 10.3103 2.6584 -0.4725
20 14 10.5075 3.8148 2.0374
21 1 9.5530 4.0025 3.1593
22 1 11.6630 3.0049 2.5002
23 1 10.9876 5.1399 1.5695
24 1 -0.3634 -1.0276 0.0005
25 1 -0.3634 0.5139 0.8900
26 1 -0.3634 0.5138 -0.8900
27 1 1.8933 -0.5140 -0.8900
28 1 1.8933 -0.5139 0.8900
29 1 1.6767 1.9563 0.8899
30 1 1.6767 1.9562 -0.8901
31 1 3.3819 5.8470 -0.0009
32 1 5.8336 5.9821 -0.0129
33 1 6.6234 1.5302 2.0636
34 1 5.1372 0.6931 1.5547
35 1 6.7257 -0.0509 1.2523
36 1 8.3193 -0.1091 0.2141
37 1 7.8880 0.0292 -1.5073
38 1 9.4071 0.7394 -0.9107
39 1 11.2417 2.9156 -0.5574
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000686307018.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:20:31
Heat of formation + Delta-G solvation = 26.120931 kcal
Electronic energy + Delta-G solvation = -20779.933679 eV
Core-core repulsion = 17723.966917 eV
Total energy + Delta-G solvation = -3055.966761 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 265.153 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-40.83215 -38.17198 -37.07249 -34.02363 -33.18626 -32.40720 -30.03577 -28.46524
-26.68809 -25.51174 -25.08267 -23.53726 -22.56578 -21.40192 -19.64311 -18.07806
-17.22786 -16.60904 -16.25999 -16.03592 -14.83947 -14.64049 -14.54636 -14.30828
-13.53651 -13.48478 -13.04144 -12.87455 -12.38979 -12.22831 -12.19363 -11.52892
-11.46422 -11.22635 -11.08183 -10.94232 -10.83266 -10.69224 -10.59567 -10.42872
-10.24193 -10.04103 -9.89985 -9.29967 -8.51433 -8.40776 -8.29125 -7.19099
-5.90369 -3.95099 1.40104 1.72954 3.20850 3.32303 3.40330 3.43890
4.19335 4.42410 4.49247 4.64124 4.88568 4.90098 4.97399 5.17585
5.38421 5.41967 5.42333 5.53416 5.58915 5.64259 5.83874 5.88388
6.02784 6.09603 6.11488 6.37278 6.51471 6.62794 6.89746 7.02612
7.13347 7.34299 7.52452 7.71133 7.79000 7.84972 8.11909 8.27468
8.40568 8.55145 9.03543 9.66446 11.13594
Molecular weight = 265.15amu
Principal moments of inertia in cm(-1)
A = 0.025563 B = 0.005772 C = 0.005108
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1095.080691 B = 4849.892502 C = 5480.733538
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.124 4.124
3 C 0.068 3.932
4 O -0.286 6.286
5 C 0.259 3.741
6 N -0.495 5.495
7 C 0.034 3.966
8 C 0.025 3.975
9 N -0.396 5.396
10 C 0.282 3.718
11 N -0.473 5.473
12 C 0.041 3.959
13 C 0.212 3.788
14 H 0.046 0.954
15 C -0.133 4.133
16 C -0.501 4.501
17 H 0.055 0.945
18 C 0.065 3.935
19 N -0.893 5.893
20 Si 0.888 3.112
21 H -0.277 1.277
22 H -0.287 1.287
23 H -0.285 1.285
24 H 0.061 0.939
25 H 0.056 0.944
26 H 0.056 0.944
27 H 0.073 0.927
28 H 0.071 0.929
29 H 0.059 0.941
30 H 0.060 0.940
31 H 0.160 0.840
32 H 0.162 0.838
33 H 0.045 0.955
34 H 0.052 0.948
35 H 0.075 0.925
36 H 0.028 0.972
37 H 0.014 0.986
38 H 0.090 0.910
39 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.165 -1.008 1.316 15.255
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.162 4.162
3 C -0.008 4.008
4 O -0.192 6.192
5 C 0.071 3.929
6 N -0.225 5.225
7 C -0.122 4.122
8 C -0.134 4.134
9 N -0.114 5.114
10 C 0.043 3.957
11 N -0.192 5.192
12 C -0.105 4.105
13 C 0.107 3.893
14 H 0.064 0.936
15 C -0.191 4.191
16 C -0.541 4.541
17 H 0.073 0.927
18 C -0.135 4.135
19 N -0.533 5.533
20 Si 0.717 3.283
21 H -0.202 1.202
22 H -0.213 1.213
23 H -0.212 1.212
24 H 0.080 0.920
25 H 0.075 0.925
26 H 0.075 0.925
27 H 0.092 0.908
28 H 0.090 0.910
29 H 0.078 0.922
30 H 0.079 0.921
31 H 0.178 0.822
32 H 0.179 0.821
33 H 0.064 0.936
34 H 0.071 0.929
35 H 0.093 0.907
36 H 0.047 0.953
37 H 0.033 0.967
38 H 0.109 0.891
39 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -15.052 -1.624 0.895 15.166
hybrid contribution 0.668 1.385 1.203 1.953
sum -14.384 -0.238 2.098 14.538
Atomic orbital electron populations
1.21665 0.94585 1.02105 1.02073 1.21499 0.95714 0.95325 1.03662
1.22627 0.78742 0.97577 1.01873 1.86384 1.21317 1.23640 1.87816
1.20512 0.89435 0.85359 0.97551 1.67894 1.39763 0.98505 1.16363
1.23086 0.93873 0.94642 1.00626 1.23543 0.91794 0.98382 0.99678
1.69255 1.36971 0.96945 1.08245 1.20301 0.87685 0.90855 0.96845
1.59953 1.15768 1.16361 1.27082 1.22248 1.00251 0.99227 0.88786
1.19360 0.79154 0.93856 0.96961 0.93628 1.21833 1.03362 0.96494
0.97428 1.21394 0.95616 1.35916 1.01124 0.92681 1.24788 0.97349
0.95887 0.95517 1.69873 1.10027 1.47691 1.25711 0.86602 0.79430
0.79566 0.82682 1.20206 1.21289 1.21168 0.91996 0.92536 0.92488
0.90841 0.90977 0.92226 0.92134 0.82250 0.82106 0.93606 0.92928
0.90681 0.95292 0.96650 0.89122 0.93186
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.21 9.91 37.16 0.37 -0.85 16
2 C -0.12 -1.33 6.30 -26.73 -0.17 -1.50 16
3 C 0.07 0.91 5.33 37.16 0.20 1.11 16
4 O -0.29 -5.03 8.70 -18.95 -0.16 -5.19 16
5 C 0.26 4.99 7.26 -16.72 -0.12 4.86 16
6 N -0.50 -8.58 9.40 -12.97 -0.12 -8.70 16
7 C 0.03 0.53 11.20 -17.40 -0.19 0.33 16
8 C 0.02 0.43 11.20 -17.41 -0.20 0.24 16
9 N -0.40 -8.76 7.83 -12.10 -0.09 -8.85 16
10 C 0.28 6.14 5.85 -154.48 -0.90 5.24 16
11 N -0.47 -10.68 4.51 -174.42 -0.79 -11.47 16
12 C 0.04 0.83 8.74 60.06 0.52 1.36 16
13 C 0.21 5.40 1.97 -68.86 -0.14 5.26 16
14 H 0.05 1.31 7.77 -51.93 -0.40 0.91 16
15 C -0.13 -3.24 9.01 37.15 0.33 -2.90 16
16 C -0.50 -13.49 6.24 -34.44 -0.21 -13.70 16
17 H 0.06 1.52 6.03 -52.49 -0.32 1.20 16
18 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16
19 N -0.89 -25.41 11.30 55.43 0.63 -24.78 16
20 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16
21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
27 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16
28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
29 H 0.06 0.78 8.11 -51.93 -0.42 0.36 16
30 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16
31 H 0.16 1.77 8.06 -52.48 -0.42 1.34 16
32 H 0.16 2.31 8.06 -52.49 -0.42 1.88 16
33 H 0.05 0.99 6.01 -51.92 -0.31 0.68 16
34 H 0.05 0.96 6.82 -51.93 -0.35 0.61 16
35 H 0.07 1.45 6.51 -51.93 -0.34 1.11 16
36 H 0.03 0.66 6.55 -51.93 -0.34 0.32 16
37 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16
38 H 0.09 2.41 6.01 -51.93 -0.31 2.10 16
39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16
LS Contribution 316.10 15.07 4.76 4.76
Total: -1.00 -30.44 316.10 -7.14 -37.58
By element:
Atomic # 1 Polarization: 4.70 SS G_CDS: -5.74 Total: -1.04 kcal
Atomic # 6 Polarization: 1.76 SS G_CDS: -0.60 Total: 1.15 kcal
Atomic # 7 Polarization: -53.43 SS G_CDS: -0.38 Total: -53.81 kcal
Atomic # 8 Polarization: -5.03 SS G_CDS: -0.16 Total: -5.19 kcal
Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal
Total LS contribution 4.76 Total: 4.76 kcal
Total: -30.44 -7.14 -37.58 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000686307018.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.703 kcal
(2) G-P(sol) polarization free energy of solvation -30.445 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.258 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.582 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.121 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds