Wall clock time and date at job start Mon Mar 30 2020 06:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47367 * 2 1 4 4 O 1.42902 * 109.47248 * 180.02562 * 3 2 1 5 5 C 1.35747 * 117.00043 * 179.97438 * 4 3 2 6 6 N 1.32266 * 120.11900 * 0.33156 * 5 4 3 7 7 C 1.32413 * 120.01697 * 180.29865 * 6 5 4 8 8 C 1.37956 * 120.26286 * 359.66362 * 7 6 5 9 9 N 1.32391 * 120.23106 * 0.02562 * 8 7 6 10 10 C 1.32464 * 119.97743 * 0.02562 * 9 8 7 11 11 N 1.39183 * 120.12895 * 180.02562 * 10 9 8 12 12 C 1.46897 * 110.99996 * 108.34041 * 11 10 9 13 13 C 1.46910 * 110.99811 * 344.38463 * 11 10 9 14 14 H 1.08996 * 109.46765 * 312.32062 * 13 11 10 15 15 C 1.52994 * 109.47053 * 192.31873 * 13 11 10 16 16 C 1.50701 * 109.46638 * 72.32028 * 13 11 10 17 17 H 1.07999 * 120.00529 * 359.97438 * 16 13 11 18 18 C 1.37878 * 119.99556 * 179.72481 * 16 13 11 19 19 N 1.31516 * 120.00102 * 0.27737 * 18 16 13 20 20 Si 1.86799 * 119.99840 * 180.27616 * 18 16 13 21 21 H 1.48494 * 109.47343 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47103 * 120.00051 * 20 18 16 23 23 H 1.48509 * 109.46964 * 239.99761 * 20 18 16 24 24 H 1.09000 * 109.47550 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47379 * 300.00229 * 1 2 3 26 26 H 1.08999 * 109.47553 * 60.00057 * 1 2 3 27 27 H 1.09006 * 109.47107 * 239.99321 * 2 1 3 28 28 H 1.09003 * 109.47275 * 120.00381 * 2 1 3 29 29 H 1.08990 * 109.47250 * 59.99818 * 3 2 1 30 30 H 1.09002 * 109.46643 * 299.99672 * 3 2 1 31 31 H 1.08006 * 119.87003 * 179.68635 * 7 6 5 32 32 H 1.07996 * 119.88465 * 180.02562 * 8 7 6 33 33 H 1.09009 * 109.46887 * 296.04367 * 12 11 10 34 34 H 1.08994 * 109.47465 * 56.04419 * 12 11 10 35 35 H 1.09001 * 109.47193 * 176.05171 * 12 11 10 36 36 H 1.09003 * 109.46948 * 301.97604 * 15 13 11 37 37 H 1.08998 * 109.47443 * 61.97524 * 15 13 11 38 38 H 1.08993 * 109.47229 * 181.97746 * 15 13 11 39 39 H 0.96996 * 119.99936 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0853 2.6520 -0.0012 6 7 3.3673 3.7627 0.0054 7 6 3.9706 4.9415 -0.0012 8 6 5.3480 5.0175 -0.0080 9 7 6.0766 3.9121 -0.0084 10 6 5.4829 2.7280 -0.0029 11 7 6.2458 1.5639 -0.0028 12 6 6.1787 0.8906 1.3010 13 6 7.6377 1.8467 -0.3783 14 1 7.6532 2.4735 -1.2699 15 6 8.3653 0.5321 -0.6663 16 6 8.3270 2.5651 0.7530 17 1 7.7854 2.7895 1.6600 18 6 9.6508 2.9312 0.6321 19 7 10.3103 2.6584 -0.4725 20 14 10.5075 3.8148 2.0374 21 1 9.5530 4.0025 3.1593 22 1 11.6630 3.0049 2.5002 23 1 10.9876 5.1399 1.5695 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5140 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9562 -0.8901 31 1 3.3819 5.8470 -0.0009 32 1 5.8336 5.9821 -0.0129 33 1 6.6234 1.5302 2.0636 34 1 5.1372 0.6931 1.5547 35 1 6.7257 -0.0509 1.2523 36 1 8.3193 -0.1091 0.2141 37 1 7.8880 0.0292 -1.5073 38 1 9.4071 0.7394 -0.9107 39 1 11.2417 2.9156 -0.5574 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686307018.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:31 Heat of formation + Delta-G solvation = 26.120931 kcal Electronic energy + Delta-G solvation = -20779.933679 eV Core-core repulsion = 17723.966917 eV Total energy + Delta-G solvation = -3055.966761 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.83215 -38.17198 -37.07249 -34.02363 -33.18626 -32.40720 -30.03577 -28.46524 -26.68809 -25.51174 -25.08267 -23.53726 -22.56578 -21.40192 -19.64311 -18.07806 -17.22786 -16.60904 -16.25999 -16.03592 -14.83947 -14.64049 -14.54636 -14.30828 -13.53651 -13.48478 -13.04144 -12.87455 -12.38979 -12.22831 -12.19363 -11.52892 -11.46422 -11.22635 -11.08183 -10.94232 -10.83266 -10.69224 -10.59567 -10.42872 -10.24193 -10.04103 -9.89985 -9.29967 -8.51433 -8.40776 -8.29125 -7.19099 -5.90369 -3.95099 1.40104 1.72954 3.20850 3.32303 3.40330 3.43890 4.19335 4.42410 4.49247 4.64124 4.88568 4.90098 4.97399 5.17585 5.38421 5.41967 5.42333 5.53416 5.58915 5.64259 5.83874 5.88388 6.02784 6.09603 6.11488 6.37278 6.51471 6.62794 6.89746 7.02612 7.13347 7.34299 7.52452 7.71133 7.79000 7.84972 8.11909 8.27468 8.40568 8.55145 9.03543 9.66446 11.13594 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.025563 B = 0.005772 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.080691 B = 4849.892502 C = 5480.733538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C 0.068 3.932 4 O -0.286 6.286 5 C 0.259 3.741 6 N -0.495 5.495 7 C 0.034 3.966 8 C 0.025 3.975 9 N -0.396 5.396 10 C 0.282 3.718 11 N -0.473 5.473 12 C 0.041 3.959 13 C 0.212 3.788 14 H 0.046 0.954 15 C -0.133 4.133 16 C -0.501 4.501 17 H 0.055 0.945 18 C 0.065 3.935 19 N -0.893 5.893 20 Si 0.888 3.112 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.285 1.285 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.028 0.972 37 H 0.014 0.986 38 H 0.090 0.910 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.165 -1.008 1.316 15.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C -0.008 4.008 4 O -0.192 6.192 5 C 0.071 3.929 6 N -0.225 5.225 7 C -0.122 4.122 8 C -0.134 4.134 9 N -0.114 5.114 10 C 0.043 3.957 11 N -0.192 5.192 12 C -0.105 4.105 13 C 0.107 3.893 14 H 0.064 0.936 15 C -0.191 4.191 16 C -0.541 4.541 17 H 0.073 0.927 18 C -0.135 4.135 19 N -0.533 5.533 20 Si 0.717 3.283 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.212 1.212 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.178 0.822 32 H 0.179 0.821 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.047 0.953 37 H 0.033 0.967 38 H 0.109 0.891 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.052 -1.624 0.895 15.166 hybrid contribution 0.668 1.385 1.203 1.953 sum -14.384 -0.238 2.098 14.538 Atomic orbital electron populations 1.21665 0.94585 1.02105 1.02073 1.21499 0.95714 0.95325 1.03662 1.22627 0.78742 0.97577 1.01873 1.86384 1.21317 1.23640 1.87816 1.20512 0.89435 0.85359 0.97551 1.67894 1.39763 0.98505 1.16363 1.23086 0.93873 0.94642 1.00626 1.23543 0.91794 0.98382 0.99678 1.69255 1.36971 0.96945 1.08245 1.20301 0.87685 0.90855 0.96845 1.59953 1.15768 1.16361 1.27082 1.22248 1.00251 0.99227 0.88786 1.19360 0.79154 0.93856 0.96961 0.93628 1.21833 1.03362 0.96494 0.97428 1.21394 0.95616 1.35916 1.01124 0.92681 1.24788 0.97349 0.95887 0.95517 1.69873 1.10027 1.47691 1.25711 0.86602 0.79430 0.79566 0.82682 1.20206 1.21289 1.21168 0.91996 0.92536 0.92488 0.90841 0.90977 0.92226 0.92134 0.82250 0.82106 0.93606 0.92928 0.90681 0.95292 0.96650 0.89122 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.33 6.30 -26.73 -0.17 -1.50 16 3 C 0.07 0.91 5.33 37.16 0.20 1.11 16 4 O -0.29 -5.03 8.70 -18.95 -0.16 -5.19 16 5 C 0.26 4.99 7.26 -16.72 -0.12 4.86 16 6 N -0.50 -8.58 9.40 -12.97 -0.12 -8.70 16 7 C 0.03 0.53 11.20 -17.40 -0.19 0.33 16 8 C 0.02 0.43 11.20 -17.41 -0.20 0.24 16 9 N -0.40 -8.76 7.83 -12.10 -0.09 -8.85 16 10 C 0.28 6.14 5.85 -154.48 -0.90 5.24 16 11 N -0.47 -10.68 4.51 -174.42 -0.79 -11.47 16 12 C 0.04 0.83 8.74 60.06 0.52 1.36 16 13 C 0.21 5.40 1.97 -68.86 -0.14 5.26 16 14 H 0.05 1.31 7.77 -51.93 -0.40 0.91 16 15 C -0.13 -3.24 9.01 37.15 0.33 -2.90 16 16 C -0.50 -13.49 6.24 -34.44 -0.21 -13.70 16 17 H 0.06 1.52 6.03 -52.49 -0.32 1.20 16 18 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 19 N -0.89 -25.41 11.30 55.43 0.63 -24.78 16 20 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.78 8.11 -51.93 -0.42 0.36 16 30 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 31 H 0.16 1.77 8.06 -52.48 -0.42 1.34 16 32 H 0.16 2.31 8.06 -52.49 -0.42 1.88 16 33 H 0.05 0.99 6.01 -51.92 -0.31 0.68 16 34 H 0.05 0.96 6.82 -51.93 -0.35 0.61 16 35 H 0.07 1.45 6.51 -51.93 -0.34 1.11 16 36 H 0.03 0.66 6.55 -51.93 -0.34 0.32 16 37 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.09 2.41 6.01 -51.93 -0.31 2.10 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 316.10 15.07 4.76 4.76 Total: -1.00 -30.44 316.10 -7.14 -37.58 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -5.74 Total: -1.04 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -0.60 Total: 1.15 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.38 Total: -53.81 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.16 Total: -5.19 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.44 -7.14 -37.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686307018.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.703 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds