Wall clock time and date at job start Mon Mar 30 2020 06:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47367 * 2 1 4 4 O 1.42902 * 109.47248 * 180.02562 * 3 2 1 5 5 C 1.35747 * 117.00043 * 179.97438 * 4 3 2 6 6 N 1.32266 * 120.11900 * 0.33156 * 5 4 3 7 7 C 1.32413 * 120.01697 * 180.29865 * 6 5 4 8 8 C 1.37956 * 120.26286 * 359.66362 * 7 6 5 9 9 N 1.32391 * 120.23106 * 0.02562 * 8 7 6 10 10 C 1.32464 * 119.97743 * 0.02562 * 9 8 7 11 11 N 1.39183 * 120.12895 * 180.02562 * 10 9 8 12 12 C 1.46897 * 110.99996 * 108.34041 * 11 10 9 13 13 C 1.46910 * 110.99811 * 344.38463 * 11 10 9 14 14 H 1.08996 * 109.46765 * 312.32062 * 13 11 10 15 15 C 1.52994 * 109.47053 * 192.31873 * 13 11 10 16 16 C 1.50701 * 109.46638 * 72.32028 * 13 11 10 17 17 H 1.07999 * 120.00529 * 359.97438 * 16 13 11 18 18 C 1.37878 * 119.99556 * 179.72481 * 16 13 11 19 19 N 1.31516 * 120.00102 * 0.27737 * 18 16 13 20 20 Si 1.86799 * 119.99840 * 180.27616 * 18 16 13 21 21 H 1.48494 * 109.47343 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47103 * 120.00051 * 20 18 16 23 23 H 1.48509 * 109.46964 * 239.99761 * 20 18 16 24 24 H 1.09000 * 109.47550 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47379 * 300.00229 * 1 2 3 26 26 H 1.08999 * 109.47553 * 60.00057 * 1 2 3 27 27 H 1.09006 * 109.47107 * 239.99321 * 2 1 3 28 28 H 1.09003 * 109.47275 * 120.00381 * 2 1 3 29 29 H 1.08990 * 109.47250 * 59.99818 * 3 2 1 30 30 H 1.09002 * 109.46643 * 299.99672 * 3 2 1 31 31 H 1.08006 * 119.87003 * 179.68635 * 7 6 5 32 32 H 1.07996 * 119.88465 * 180.02562 * 8 7 6 33 33 H 1.09009 * 109.46887 * 296.04367 * 12 11 10 34 34 H 1.08994 * 109.47465 * 56.04419 * 12 11 10 35 35 H 1.09001 * 109.47193 * 176.05171 * 12 11 10 36 36 H 1.09003 * 109.46948 * 301.97604 * 15 13 11 37 37 H 1.08998 * 109.47443 * 61.97524 * 15 13 11 38 38 H 1.08993 * 109.47229 * 181.97746 * 15 13 11 39 39 H 0.96996 * 119.99936 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0853 2.6520 -0.0012 6 7 3.3673 3.7627 0.0054 7 6 3.9706 4.9415 -0.0012 8 6 5.3480 5.0175 -0.0080 9 7 6.0766 3.9121 -0.0084 10 6 5.4829 2.7280 -0.0029 11 7 6.2458 1.5639 -0.0028 12 6 6.1787 0.8906 1.3010 13 6 7.6377 1.8467 -0.3783 14 1 7.6532 2.4735 -1.2699 15 6 8.3653 0.5321 -0.6663 16 6 8.3270 2.5651 0.7530 17 1 7.7854 2.7895 1.6600 18 6 9.6508 2.9312 0.6321 19 7 10.3103 2.6584 -0.4725 20 14 10.5075 3.8148 2.0374 21 1 9.5530 4.0025 3.1593 22 1 11.6630 3.0049 2.5002 23 1 10.9876 5.1399 1.5695 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5140 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9562 -0.8901 31 1 3.3819 5.8470 -0.0009 32 1 5.8336 5.9821 -0.0129 33 1 6.6234 1.5302 2.0636 34 1 5.1372 0.6931 1.5547 35 1 6.7257 -0.0509 1.2523 36 1 8.3193 -0.1091 0.2141 37 1 7.8880 0.0292 -1.5073 38 1 9.4071 0.7394 -0.9107 39 1 11.2417 2.9156 -0.5574 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686307018.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:31 Heat of formation + Delta-G solvation = 5.415433 kcal Electronic energy + Delta-G solvation = -20780.831537 eV Core-core repulsion = 17723.966917 eV Total energy + Delta-G solvation = -3056.864619 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.26776 -39.50217 -38.74041 -35.00693 -34.94652 -34.04080 -31.69010 -30.15807 -27.74868 -27.16111 -27.06631 -24.93748 -24.03850 -22.37092 -21.49283 -19.38424 -18.67546 -18.48619 -17.81778 -17.46492 -16.66413 -15.88878 -15.84068 -15.64732 -15.10571 -15.01087 -14.44466 -14.33397 -13.94218 -13.41592 -13.36817 -13.05729 -12.97343 -12.72155 -12.67636 -12.54661 -12.39543 -12.25194 -12.05697 -11.91569 -11.87404 -11.81865 -11.50740 -11.23385 -10.41269 -10.08306 -9.92322 -8.81252 -7.97959 -6.09608 0.00010 0.29306 1.39264 1.41684 1.51235 1.93813 2.46746 2.76554 2.99772 3.26192 3.29181 3.62637 3.85071 4.00072 4.02201 4.36203 4.40349 4.44535 4.53776 4.59741 4.61018 4.71758 4.85017 4.85360 5.05815 5.10664 5.13861 5.17182 5.20814 5.21407 5.37703 5.53552 5.69001 5.88403 6.08720 6.11846 6.32772 6.36991 6.61060 6.91982 7.09940 7.54153 9.03762 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.025563 B = 0.005772 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.080691 B = 4849.892502 C = 5480.733538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 C 0.065 3.935 4 O -0.299 6.299 5 C 0.259 3.741 6 N -0.494 5.494 7 C 0.063 3.937 8 C 0.013 3.987 9 N -0.440 5.440 10 C 0.242 3.758 11 N -0.478 5.478 12 C 0.049 3.951 13 C 0.222 3.778 14 H 0.004 0.996 15 C -0.122 4.122 16 C -0.496 4.496 17 H 0.045 0.955 18 C 0.019 3.981 19 N -0.921 5.921 20 Si 0.947 3.053 21 H -0.277 1.277 22 H -0.281 1.281 23 H -0.284 1.284 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.213 0.787 32 H 0.189 0.811 33 H 0.025 0.975 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.026 0.974 38 H 0.067 0.933 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.176 -0.244 2.123 17.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.158 4.158 3 C -0.011 4.011 4 O -0.205 6.205 5 C 0.072 3.928 6 N -0.224 5.224 7 C -0.095 4.095 8 C -0.147 4.147 9 N -0.159 5.159 10 C 0.005 3.995 11 N -0.197 5.197 12 C -0.097 4.097 13 C 0.116 3.884 14 H 0.022 0.978 15 C -0.181 4.181 16 C -0.535 4.535 17 H 0.063 0.937 18 C -0.179 4.179 19 N -0.562 5.562 20 Si 0.774 3.226 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.210 1.210 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.230 0.770 32 H 0.206 0.794 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.085 0.915 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.091 -0.892 1.708 17.200 hybrid contribution 1.130 1.270 0.930 1.938 sum -15.961 0.378 2.638 16.182 Atomic orbital electron populations 1.21650 0.92413 1.03243 1.02596 1.21527 0.97415 0.93402 1.03432 1.22912 0.76598 0.99504 1.02047 1.86362 1.23532 1.23116 1.87494 1.20373 0.88758 0.86408 0.97223 1.68077 1.39316 0.98630 1.16391 1.23890 0.93553 0.95629 0.96397 1.24086 0.92969 0.98152 0.99467 1.69061 1.39383 0.98326 1.09155 1.20307 0.88734 0.90540 0.99938 1.59925 1.13880 1.17673 1.28221 1.22205 1.01265 0.98663 0.87570 1.19017 0.81193 0.93297 0.94891 0.97777 1.21662 1.01818 0.96344 0.98237 1.21460 0.95556 1.35540 1.00945 0.93700 1.25459 0.98098 0.96816 0.97567 1.69998 1.10194 1.48755 1.27215 0.85682 0.78371 0.78467 0.80032 1.20160 1.20718 1.21034 0.90582 0.91923 0.92060 0.91314 0.91011 0.91783 0.92059 0.77023 0.79397 0.95624 0.91084 0.90195 0.94286 0.95537 0.91477 0.93235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.91 71.98 0.71 -1.28 16 2 C -0.12 -2.38 6.30 30.59 0.19 -2.18 16 3 C 0.06 1.64 5.33 71.98 0.38 2.02 16 4 O -0.30 -10.27 8.70 -90.72 -0.79 -11.06 16 5 C 0.26 9.73 7.26 85.05 0.62 10.35 16 6 N -0.49 -15.99 9.40 -307.76 -2.89 -18.88 16 7 C 0.06 1.73 11.20 84.54 0.95 2.67 16 8 C 0.01 0.42 11.20 84.54 0.95 1.36 16 9 N -0.44 -19.61 7.83 -192.19 -1.50 -21.12 16 10 C 0.24 10.62 5.85 133.19 0.78 11.40 16 11 N -0.48 -22.00 4.51 -705.73 -3.18 -25.19 16 12 C 0.05 2.01 8.74 127.69 1.12 3.12 16 13 C 0.22 11.68 1.97 44.17 0.09 11.76 16 14 H 0.00 0.26 7.77 -2.39 -0.02 0.24 16 15 C -0.12 -6.09 9.01 71.98 0.65 -5.44 16 16 C -0.50 -27.24 6.24 25.60 0.16 -27.08 16 17 H 0.04 2.53 6.03 -2.91 -0.02 2.51 16 18 C 0.02 1.03 5.30 84.65 0.45 1.48 16 19 N -0.92 -53.52 11.30 21.45 0.24 -53.28 16 20 Si 0.95 44.69 29.54 68.60 2.03 46.72 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 23 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 24 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 1.56 8.11 -2.39 -0.02 1.54 16 30 H 0.06 1.54 8.12 -2.39 -0.02 1.52 16 31 H 0.21 3.52 8.06 -2.91 -0.02 3.50 16 32 H 0.19 4.95 8.06 -2.91 -0.02 4.93 16 33 H 0.03 1.12 6.01 -2.38 -0.01 1.11 16 34 H 0.07 2.58 6.82 -2.39 -0.02 2.57 16 35 H 0.08 3.10 6.51 -2.39 -0.02 3.08 16 36 H 0.04 1.80 6.55 -2.39 -0.02 1.79 16 37 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 3.66 6.01 -2.39 -0.01 3.65 16 39 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -67.14 316.10 1.98 -65.17 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 1.04 Total: 9.44 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 7.04 Total: 8.20 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -7.34 Total: -118.46 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -0.79 Total: -11.06 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -67.14 1.98 -65.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686307018.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.581 kcal (2) G-P(sol) polarization free energy of solvation -67.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds