Wall clock time and date at job start Mon Mar 30 2020 06:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.46947 * 2 1 4 4 C 1.35750 * 116.99919 * 180.02562 * 3 2 1 5 5 N 1.32256 * 120.11801 * 359.97438 * 4 3 2 6 6 C 1.32422 * 120.01584 * 180.02562 * 5 4 3 7 7 C 1.37948 * 120.26002 * 0.02562 * 6 5 4 8 8 N 1.32396 * 120.23472 * 359.70707 * 7 6 5 9 9 C 1.32456 * 119.97247 * 0.55089 * 8 7 6 10 10 N 1.39182 * 120.12244 * 179.74559 * 9 8 7 11 11 C 1.46900 * 111.00309 * 255.86734 * 10 9 8 12 12 C 1.50696 * 109.46990 * 64.78706 * 11 10 9 13 13 H 1.08003 * 120.00340 * 2.73117 * 12 11 10 14 14 C 1.37880 * 120.00099 * 182.73816 * 12 11 10 15 15 N 1.31514 * 119.99761 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00116 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47193 * 89.99343 * 16 14 12 18 18 H 1.48496 * 109.47037 * 209.99629 * 16 14 12 19 19 H 1.48497 * 109.47136 * 329.99443 * 16 14 12 20 20 C 1.46900 * 111.00150 * 19.82684 * 10 9 8 21 21 C 1.53001 * 109.47436 * 64.71123 * 20 10 9 22 22 C 1.53004 * 109.47271 * 184.71717 * 20 10 9 23 23 H 1.09000 * 109.46635 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47092 * 299.99643 * 1 2 3 25 25 H 1.08999 * 109.46928 * 60.00280 * 1 2 3 26 26 H 1.08996 * 109.47092 * 240.00357 * 2 1 3 27 27 H 1.08991 * 109.47012 * 120.00036 * 2 1 3 28 28 H 1.08005 * 119.86633 * 179.97438 * 6 5 4 29 29 H 1.08004 * 119.88121 * 179.97438 * 7 6 5 30 30 H 1.08997 * 109.47184 * 184.78939 * 11 10 9 31 31 H 1.08998 * 109.47231 * 304.78682 * 11 10 9 32 32 H 0.96997 * 120.00122 * 179.97438 * 15 14 12 33 33 H 1.09002 * 109.46953 * 304.70695 * 20 10 9 34 34 H 1.08998 * 109.46773 * 173.72798 * 21 20 10 35 35 H 1.08999 * 109.47106 * 293.72835 * 21 20 10 36 36 H 1.08999 * 109.46559 * 53.73071 * 21 20 10 37 37 H 1.09007 * 109.46749 * 299.99430 * 22 20 10 38 38 H 1.08996 * 109.47235 * 59.98969 * 22 20 10 39 39 H 1.08995 * 109.47208 * 179.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3521 1.5252 -0.0005 5 7 4.1599 0.4780 -0.0005 6 6 5.4724 0.6539 -0.0005 7 6 6.0032 1.9272 0.0000 8 7 5.2039 2.9826 -0.0054 9 6 3.8897 2.8175 -0.0002 10 7 3.0465 3.9248 -0.0005 11 6 2.4659 4.1448 1.3309 12 6 3.5611 4.4951 2.3049 13 1 4.5800 4.5922 1.9599 14 6 3.2626 4.6914 3.6366 15 7 2.0220 4.5735 4.0566 16 14 4.6202 5.1263 4.8438 17 1 4.7653 6.6025 4.9148 18 1 4.2753 4.5976 6.1879 19 1 5.8991 4.5245 4.3884 20 6 3.7524 5.1239 -0.4717 21 6 4.1547 4.9366 -1.9359 22 6 2.8318 6.3396 -0.3471 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 6.1299 -0.2030 -0.0001 29 1 7.0746 2.0635 0.0004 30 1 1.7469 4.9626 1.2831 31 1 1.9619 3.2369 1.6620 32 1 1.8120 4.7113 4.9935 33 1 4.6454 5.2810 0.1333 34 1 4.5781 5.8654 -2.3180 35 1 4.8965 4.1415 -2.0100 36 1 3.2758 4.6695 -2.5227 37 1 1.9387 6.1826 -0.9521 38 1 2.5452 6.4730 0.6960 39 1 3.3557 7.2294 -0.6963 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686307881.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:39 Heat of formation + Delta-G solvation = 21.291604 kcal Electronic energy + Delta-G solvation = -21296.802407 eV Core-core repulsion = 18240.626230 eV Total energy + Delta-G solvation = -3056.176177 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.82771 -38.04939 -37.37043 -33.21217 -32.74881 -32.01969 -30.78740 -29.13181 -26.95736 -25.88639 -24.41436 -23.22988 -22.18276 -22.00946 -19.35883 -18.03777 -17.25235 -16.76229 -15.99790 -15.74832 -15.08026 -14.55950 -14.27490 -14.02466 -13.80480 -13.35336 -12.92392 -12.50259 -12.38448 -12.18821 -11.92598 -11.67128 -11.43776 -11.33334 -11.12119 -11.01201 -10.88064 -10.72665 -10.54427 -10.46360 -10.23006 -9.99856 -9.89028 -9.69604 -8.70607 -8.44784 -8.31588 -7.18280 -6.06604 -4.14269 1.48796 1.73451 3.26457 3.33188 3.37790 3.39566 4.20160 4.39698 4.49482 4.68558 4.92722 5.25249 5.26443 5.28568 5.33751 5.56020 5.60321 5.76600 5.77839 5.83313 5.98005 6.08615 6.10712 6.27591 6.27704 6.40702 6.44319 6.58198 6.63143 7.01939 7.03110 7.19179 7.48487 7.56719 7.69277 7.89173 7.89756 8.12301 8.25394 8.46913 8.95733 9.52248 10.99403 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.013991 B = 0.008325 C = 0.007630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.846564 B = 3362.722446 C = 3669.031870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.064 3.936 3 O -0.279 6.279 4 C 0.276 3.724 5 N -0.494 5.494 6 C 0.035 3.965 7 C 0.023 3.977 8 N -0.442 5.442 9 C 0.310 3.690 10 N -0.471 5.471 11 C 0.193 3.807 12 C -0.550 4.550 13 H 0.067 0.933 14 C 0.067 3.933 15 N -0.889 5.889 16 Si 0.889 3.111 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.089 3.911 21 C -0.141 4.141 22 C -0.144 4.144 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.160 0.840 29 H 0.159 0.841 30 H 0.049 0.951 31 H 0.041 0.959 32 H 0.262 0.738 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.360 -5.995 -9.203 11.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.184 6.184 4 C 0.088 3.912 5 N -0.224 5.224 6 C -0.121 4.121 7 C -0.134 4.134 8 N -0.162 5.162 9 C 0.071 3.929 10 N -0.191 5.191 11 C 0.070 3.930 12 C -0.589 4.589 13 H 0.085 0.915 14 C -0.136 4.136 15 N -0.528 5.528 16 Si 0.717 3.283 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.019 4.019 21 C -0.199 4.199 22 C -0.202 4.202 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.177 0.823 29 H 0.177 0.823 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.588 -5.864 -9.361 11.160 hybrid contribution 1.495 0.015 1.406 2.052 sum 3.083 -5.849 -7.955 10.344 Atomic orbital electron populations 1.21776 0.93220 1.02182 1.03639 1.22539 0.94841 0.82145 1.01650 1.86447 1.15688 1.28969 1.87294 1.20369 0.84963 0.89747 0.96109 1.67915 1.05693 1.32548 1.16219 1.22981 0.90340 0.98057 1.00729 1.23244 1.00664 0.89067 1.00449 1.68653 1.02943 1.33197 1.11435 1.19949 0.87911 0.90550 0.94471 1.60208 1.28414 1.01858 1.28624 1.19969 0.94893 0.98625 0.79477 1.21822 0.95121 1.48566 0.93399 0.91470 1.24920 0.95353 0.95085 0.98221 1.69945 1.17714 1.49117 1.15977 0.86631 0.82441 0.78755 0.80490 1.20453 1.21223 1.19952 1.21363 0.96923 0.89072 0.94538 1.21852 1.00666 1.00830 0.96547 1.21887 0.98959 0.95839 1.03503 0.90898 0.91288 0.91749 0.92357 0.92117 0.82303 0.82332 0.93307 0.94117 0.92791 0.91190 0.92970 0.93154 0.93095 0.93142 0.90507 0.93386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 10.28 37.16 0.38 -1.56 16 2 C 0.06 1.01 6.05 37.16 0.22 1.24 16 3 O -0.28 -5.65 9.08 -18.96 -0.17 -5.82 16 4 C 0.28 5.77 7.28 -16.72 -0.12 5.64 16 5 N -0.49 -9.18 9.39 -12.97 -0.12 -9.30 16 6 C 0.03 0.55 11.20 -17.40 -0.19 0.36 16 7 C 0.02 0.39 11.20 -17.41 -0.20 0.19 16 8 N -0.44 -8.99 7.21 -12.10 -0.09 -9.08 16 9 C 0.31 6.76 4.51 -154.48 -0.70 6.06 16 10 N -0.47 -10.52 4.38 -166.65 -0.73 -11.25 16 11 C 0.19 4.95 4.43 -4.98 -0.02 4.93 16 12 C -0.55 -15.07 7.62 -34.44 -0.26 -15.33 16 13 H 0.07 1.87 5.96 -52.48 -0.31 1.56 16 14 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 15 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 16 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 19 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.09 1.79 1.84 -67.71 -0.12 1.67 16 21 C -0.14 -2.42 8.99 37.16 0.33 -2.09 16 22 C -0.14 -2.70 8.65 37.16 0.32 -2.38 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.84 8.11 -51.93 -0.42 0.42 16 27 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 28 H 0.16 1.83 8.06 -52.48 -0.42 1.41 16 29 H 0.16 2.02 8.06 -52.48 -0.42 1.60 16 30 H 0.05 1.30 6.25 -51.93 -0.32 0.97 16 31 H 0.04 1.15 7.20 -51.93 -0.37 0.78 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.07 1.57 6.01 -51.93 -0.31 1.25 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.89 6.62 -51.93 -0.34 0.54 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 38 H 0.08 1.64 6.11 -51.93 -0.32 1.32 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 317.51 15.07 4.78 4.78 Total: -1.00 -30.76 317.51 -6.83 -37.59 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -5.77 Total: 0.98 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -0.45 Total: 0.51 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.20 Total: -54.76 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.17 Total: -5.82 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.76 -6.83 -37.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686307881.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.883 kcal (2) G-P(sol) polarization free energy of solvation -30.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds