Wall clock time and date at job start Mon Mar 30 2020 06:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.46947 * 2 1 4 4 C 1.35750 * 116.99919 * 180.02562 * 3 2 1 5 5 N 1.32256 * 120.11801 * 359.97438 * 4 3 2 6 6 C 1.32422 * 120.01584 * 180.02562 * 5 4 3 7 7 C 1.37948 * 120.26002 * 0.02562 * 6 5 4 8 8 N 1.32396 * 120.23472 * 359.70707 * 7 6 5 9 9 C 1.32456 * 119.97247 * 0.55089 * 8 7 6 10 10 N 1.39182 * 120.12244 * 179.74559 * 9 8 7 11 11 C 1.46900 * 111.00309 * 255.86734 * 10 9 8 12 12 C 1.50696 * 109.46990 * 64.78706 * 11 10 9 13 13 H 1.08003 * 120.00340 * 2.73117 * 12 11 10 14 14 C 1.37880 * 120.00099 * 182.73816 * 12 11 10 15 15 N 1.31514 * 119.99761 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00116 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47193 * 89.99343 * 16 14 12 18 18 H 1.48496 * 109.47037 * 209.99629 * 16 14 12 19 19 H 1.48497 * 109.47136 * 329.99443 * 16 14 12 20 20 C 1.46900 * 111.00150 * 19.82684 * 10 9 8 21 21 C 1.53001 * 109.47436 * 64.71123 * 20 10 9 22 22 C 1.53004 * 109.47271 * 184.71717 * 20 10 9 23 23 H 1.09000 * 109.46635 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47092 * 299.99643 * 1 2 3 25 25 H 1.08999 * 109.46928 * 60.00280 * 1 2 3 26 26 H 1.08996 * 109.47092 * 240.00357 * 2 1 3 27 27 H 1.08991 * 109.47012 * 120.00036 * 2 1 3 28 28 H 1.08005 * 119.86633 * 179.97438 * 6 5 4 29 29 H 1.08004 * 119.88121 * 179.97438 * 7 6 5 30 30 H 1.08997 * 109.47184 * 184.78939 * 11 10 9 31 31 H 1.08998 * 109.47231 * 304.78682 * 11 10 9 32 32 H 0.96997 * 120.00122 * 179.97438 * 15 14 12 33 33 H 1.09002 * 109.46953 * 304.70695 * 20 10 9 34 34 H 1.08998 * 109.46773 * 173.72798 * 21 20 10 35 35 H 1.08999 * 109.47106 * 293.72835 * 21 20 10 36 36 H 1.08999 * 109.46559 * 53.73071 * 21 20 10 37 37 H 1.09007 * 109.46749 * 299.99430 * 22 20 10 38 38 H 1.08996 * 109.47235 * 59.98969 * 22 20 10 39 39 H 1.08995 * 109.47208 * 179.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3521 1.5252 -0.0005 5 7 4.1599 0.4780 -0.0005 6 6 5.4724 0.6539 -0.0005 7 6 6.0032 1.9272 0.0000 8 7 5.2039 2.9826 -0.0054 9 6 3.8897 2.8175 -0.0002 10 7 3.0465 3.9248 -0.0005 11 6 2.4659 4.1448 1.3309 12 6 3.5611 4.4951 2.3049 13 1 4.5800 4.5922 1.9599 14 6 3.2626 4.6914 3.6366 15 7 2.0220 4.5735 4.0566 16 14 4.6202 5.1263 4.8438 17 1 4.7653 6.6025 4.9148 18 1 4.2753 4.5976 6.1879 19 1 5.8991 4.5245 4.3884 20 6 3.7524 5.1239 -0.4717 21 6 4.1547 4.9366 -1.9359 22 6 2.8318 6.3396 -0.3471 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 6.1299 -0.2030 -0.0001 29 1 7.0746 2.0635 0.0004 30 1 1.7469 4.9626 1.2831 31 1 1.9619 3.2369 1.6620 32 1 1.8120 4.7113 4.9935 33 1 4.6454 5.2810 0.1333 34 1 4.5781 5.8654 -2.3180 35 1 4.8965 4.1415 -2.0100 36 1 3.2758 4.6695 -2.5227 37 1 1.9387 6.1826 -0.9521 38 1 2.5452 6.4730 0.6960 39 1 3.3557 7.2294 -0.6963 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686307881.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:38 Heat of formation + Delta-G solvation = -0.371307 kcal Electronic energy + Delta-G solvation = -21297.741781 eV Core-core repulsion = 18240.626230 eV Total energy + Delta-G solvation = -3057.115551 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.28713 -39.52201 -38.92758 -34.94695 -34.52995 -33.42608 -32.20601 -30.69876 -28.60002 -27.62445 -25.79444 -24.94050 -23.73972 -23.41381 -20.98913 -19.44038 -18.84521 -18.50099 -17.59388 -17.39541 -16.83948 -16.05043 -15.75893 -15.51787 -15.34190 -14.87215 -14.41783 -14.27258 -13.58689 -13.51875 -13.39279 -13.20674 -13.08881 -12.87818 -12.77717 -12.65177 -12.41815 -12.29592 -12.23612 -12.02513 -11.88735 -11.72806 -11.63980 -11.38138 -10.62098 -10.20078 -9.87849 -8.81598 -8.17439 -6.34799 0.06063 0.27974 1.32849 1.33159 1.43629 2.04602 2.34647 2.73664 3.03162 3.09184 3.30885 3.61487 3.83249 4.09001 4.17072 4.26165 4.29653 4.41904 4.45002 4.51167 4.63028 4.81636 4.86636 4.94992 4.95976 5.01269 5.09878 5.17286 5.20665 5.32138 5.37015 5.45068 5.49649 5.74732 5.93129 6.07484 6.20046 6.40464 6.58304 6.82646 7.00235 7.35018 8.85549 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.013991 B = 0.008325 C = 0.007630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.846564 B = 3362.722446 C = 3669.031870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.059 3.941 3 O -0.305 6.305 4 C 0.253 3.747 5 N -0.498 5.498 6 C 0.053 3.947 7 C 0.020 3.980 8 N -0.457 5.457 9 C 0.271 3.729 10 N -0.474 5.474 11 C 0.215 3.785 12 C -0.549 4.549 13 H 0.061 0.939 14 C 0.015 3.985 15 N -0.922 5.922 16 Si 0.952 3.048 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.273 1.273 20 C 0.088 3.912 21 C -0.127 4.127 22 C -0.137 4.137 23 H 0.107 0.893 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.211 0.789 29 H 0.202 0.798 30 H 0.030 0.970 31 H 0.004 0.996 32 H 0.264 0.736 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.043 0.957 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.042 0.958 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.439 -6.875 -10.017 12.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.016 4.016 3 O -0.211 6.211 4 C 0.067 3.933 5 N -0.228 5.228 6 C -0.104 4.104 7 C -0.139 4.139 8 N -0.177 5.177 9 C 0.034 3.966 10 N -0.195 5.195 11 C 0.090 3.910 12 C -0.588 4.588 13 H 0.079 0.921 14 C -0.184 4.184 15 N -0.562 5.562 16 Si 0.777 3.223 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.198 1.198 20 C -0.020 4.020 21 C -0.185 4.185 22 C -0.195 4.195 23 H 0.126 0.874 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.228 0.772 29 H 0.219 0.781 30 H 0.048 0.952 31 H 0.023 0.977 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.638 -6.735 -10.197 12.750 hybrid contribution 0.981 0.142 1.608 1.889 sum 4.619 -6.593 -8.588 11.771 Atomic orbital electron populations 1.21798 0.91244 1.04188 1.02880 1.22805 0.96411 0.80545 1.01838 1.86414 1.15877 1.31406 1.87396 1.20503 0.85504 0.90119 0.97133 1.68026 1.06831 1.31790 1.16200 1.23899 0.89835 0.99667 0.97008 1.24039 1.02294 0.88619 0.98931 1.68595 1.02751 1.35172 1.11211 1.19934 0.88559 0.90530 0.97579 1.60106 1.29783 1.03039 1.26542 1.19467 0.94124 0.95834 0.81536 1.21962 0.95109 1.47792 0.93925 0.92100 1.25719 0.97473 0.95187 1.00033 1.70061 1.19499 1.50248 1.16386 0.85651 0.79525 0.78884 0.78246 1.19426 1.20762 1.19820 1.21430 0.95834 0.88750 0.95973 1.21721 1.00569 1.01952 0.94218 1.21812 0.99459 0.96653 1.01527 0.87430 0.93032 0.91460 0.91050 0.92820 0.77200 0.78096 0.95230 0.97750 0.92672 0.93733 0.90337 0.93748 0.92946 0.92415 0.93895 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 10.28 71.98 0.74 -2.93 16 2 C 0.06 1.87 6.05 71.98 0.44 2.31 16 3 O -0.31 -12.76 9.08 -90.75 -0.82 -13.59 16 4 C 0.25 10.66 7.28 85.05 0.62 11.28 16 5 N -0.50 -17.82 9.39 -307.77 -2.89 -20.71 16 6 C 0.05 1.51 11.20 84.53 0.95 2.46 16 7 C 0.02 0.61 11.20 84.54 0.95 1.56 16 8 N -0.46 -18.21 7.21 -192.19 -1.39 -19.60 16 9 C 0.27 11.92 4.51 133.19 0.60 12.52 16 10 N -0.47 -21.90 4.38 -681.17 -2.98 -24.89 16 11 C 0.21 11.60 4.43 85.56 0.38 11.98 16 12 C -0.55 -30.98 7.62 25.60 0.20 -30.79 16 13 H 0.06 3.46 5.96 -2.91 -0.02 3.45 16 14 C 0.02 0.88 5.46 84.66 0.46 1.35 16 15 N -0.92 -55.28 13.29 21.45 0.28 -55.00 16 16 Si 0.95 45.00 29.54 68.60 2.03 47.02 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 20 C 0.09 3.57 1.84 44.92 0.08 3.65 16 21 C -0.13 -4.21 8.99 71.98 0.65 -3.57 16 22 C -0.14 -5.18 8.65 71.98 0.62 -4.56 16 23 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.07 2.02 8.11 -2.39 -0.02 2.00 16 27 H 0.05 1.73 8.11 -2.39 -0.02 1.71 16 28 H 0.21 3.68 8.06 -2.91 -0.02 3.65 16 29 H 0.20 4.21 8.06 -2.91 -0.02 4.18 16 30 H 0.03 1.68 6.25 -2.39 -0.01 1.67 16 31 H 0.00 0.26 7.20 -2.39 -0.02 0.25 16 32 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 33 H 0.04 2.02 6.01 -2.39 -0.01 2.01 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.04 1.51 6.62 -2.39 -0.02 1.50 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 2.05 8.14 -2.38 -0.02 2.04 16 38 H 0.04 1.89 6.11 -2.39 -0.01 1.88 16 39 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -69.59 317.51 1.94 -67.65 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 1.03 Total: 13.85 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 6.68 Total: 5.26 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -6.97 Total: -120.19 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.82 Total: -13.59 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -69.59 1.94 -67.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686307881.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.276 kcal (2) G-P(sol) polarization free energy of solvation -69.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds