Wall clock time and date at job start Mon Mar 30 2020 07:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99924 * 2 1 4 4 H 1.48503 * 109.46980 * 271.30001 * 3 2 1 5 5 H 1.48502 * 109.47203 * 31.29340 * 3 2 1 6 6 H 1.48499 * 109.47403 * 151.30206 * 3 2 1 7 7 C 1.37876 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00110 * 354.97369 * 7 2 1 9 9 C 1.50701 * 119.99630 * 174.69773 * 7 2 1 10 10 C 1.53005 * 115.55048 * 299.43770 * 9 7 2 11 11 N 1.46902 * 109.46875 * 298.23991 * 10 9 7 12 12 C 1.46902 * 110.99706 * 174.65964 * 11 10 9 13 13 C 1.53000 * 109.47159 * 186.59232 * 12 11 10 14 14 C 1.51080 * 110.61843 * 285.62336 * 13 12 11 15 15 C 1.54961 * 104.87870 * 276.40680 * 14 13 12 16 16 C 1.56245 * 105.86903 * 353.55607 * 15 14 13 17 17 C 1.50711 * 101.86081 * 335.02590 * 16 15 14 18 18 H 1.09000 * 108.84925 * 291.97682 * 17 16 15 19 19 O 1.39681 * 127.81957 * 158.71818 * 17 16 15 20 20 C 1.46171 * 103.81104 * 198.35474 * 19 17 16 21 21 C 1.51591 * 110.62362 * 65.76457 * 13 12 11 22 22 C 1.53005 * 117.49927 * 153.73013 * 9 7 2 23 23 C 1.53000 * 60.00077 * 252.50970 * 22 9 7 24 24 H 0.97003 * 120.00389 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46822 * 58.24078 * 10 9 7 26 26 H 1.08999 * 109.46811 * 178.24094 * 10 9 7 27 27 H 1.00903 * 110.99714 * 298.60606 * 11 10 9 28 28 H 1.09003 * 109.46866 * 306.59209 * 12 11 10 29 29 H 1.08998 * 109.47223 * 66.59279 * 12 11 10 30 30 H 1.08997 * 110.42759 * 35.80752 * 14 13 12 31 31 H 1.08999 * 110.43061 * 158.29206 * 14 13 12 32 32 H 1.08997 * 110.54613 * 234.26403 * 15 14 13 33 33 H 1.08996 * 109.81278 * 112.46383 * 15 14 13 34 34 H 1.09004 * 110.95561 * 216.88828 * 16 15 14 35 35 H 1.09003 * 110.98561 * 93.18564 * 16 15 14 36 36 H 1.08994 * 110.03184 * 147.31037 * 20 19 17 37 37 H 1.09000 * 110.02970 * 268.74544 * 20 19 17 38 38 H 1.08995 * 110.85442 * 202.79891 * 21 13 12 39 39 H 1.08998 * 110.85680 * 326.44510 * 21 13 12 40 40 H 1.09004 * 117.49722 * 0.02562 * 22 9 7 41 41 H 1.08996 * 117.49813 * 145.01673 * 22 9 7 42 42 H 1.08999 * 117.49402 * 252.51295 * 23 22 9 43 43 H 1.08996 * 117.51521 * 107.47925 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4690 2.0623 -1.3998 5 1 1.4605 2.6446 0.7272 6 1 3.5601 1.4325 0.6723 7 6 2.0045 -1.1940 -0.0005 8 1 1.4676 -2.1276 0.0810 9 6 3.5066 -1.1967 -0.1211 10 6 4.0669 -0.5751 -1.4021 11 7 3.5909 -1.3366 -2.5646 12 6 4.0049 -0.6950 -3.8196 13 6 3.3564 -1.4194 -5.0009 14 6 4.0315 -2.7487 -5.2453 15 6 5.2715 -2.4120 -6.1114 16 6 5.1486 -0.8943 -6.4618 17 6 3.6620 -0.6710 -6.3540 18 1 3.1653 -1.2117 -7.1596 19 8 2.9895 0.5373 -6.1565 20 6 1.6659 0.1278 -5.6905 21 6 1.8509 -1.2442 -4.9735 22 6 4.2613 -2.3862 0.4761 23 6 4.3189 -1.0205 1.1635 24 1 -0.4851 0.8400 -0.0004 25 1 3.7299 0.4584 -1.4819 26 1 5.1562 -0.6009 -1.3720 27 1 3.9096 -2.2932 -2.5254 28 1 3.6892 0.3484 -3.8155 29 1 5.0896 -0.7460 -3.9132 30 1 4.3309 -3.2027 -4.3007 31 1 3.3689 -3.4164 -5.7960 32 1 5.2748 -3.0091 -7.0233 33 1 6.1817 -2.5931 -5.5397 34 1 5.4995 -0.6985 -7.4751 35 1 5.6882 -0.2819 -5.7394 36 1 1.2720 0.8647 -4.9907 37 1 0.9893 0.0180 -6.5380 38 1 1.3573 -2.0418 -5.5286 39 1 1.4841 -1.1988 -3.9481 40 1 3.6711 -3.1670 0.9559 41 1 5.1570 -2.7262 -0.0436 42 1 5.2525 -0.4621 1.0959 43 1 3.7667 -0.9023 2.0958 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687468215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:25 Heat of formation + Delta-G solvation = -2.822137 kcal Electronic energy + Delta-G solvation = -21607.075821 eV Core-core repulsion = 18653.394337 eV Total energy + Delta-G solvation = -2953.681484 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.01860 -37.32620 -36.09579 -34.06233 -31.98423 -31.45339 -27.84307 -27.77265 -26.22797 -25.02287 -23.04544 -21.93733 -21.39694 -20.48442 -19.06538 -18.62472 -16.73831 -16.29899 -15.62254 -15.48896 -15.00794 -14.94650 -14.17413 -13.93867 -13.66078 -13.41341 -12.90233 -12.63690 -12.53301 -12.24895 -12.22589 -11.79227 -11.69225 -11.36538 -11.18640 -10.91399 -10.58405 -10.55944 -10.52221 -10.28805 -10.27427 -10.04045 -9.95106 -9.43916 -9.21904 -8.99915 -8.55473 -8.32172 -7.57240 -5.97660 -3.93843 3.35070 3.44889 3.49438 3.51794 4.52461 4.55384 4.62590 4.70180 4.91973 5.08198 5.15724 5.21477 5.32111 5.35137 5.39389 5.45315 5.47498 5.58678 5.69425 5.75578 5.86852 5.91507 5.92939 5.99272 6.07856 6.13278 6.15138 6.19746 6.24937 6.25316 6.42643 6.46666 6.50680 6.59559 6.77716 6.78906 7.05953 7.12283 7.17361 7.79202 7.88208 8.12660 8.64199 9.05062 9.67446 11.15027 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.020625 B = 0.006979 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.221350 B = 4010.809368 C = 4650.489017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.082 3.918 3 Si 0.871 3.129 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.257 1.257 7 C -0.457 4.457 8 H 0.074 0.926 9 C 0.009 3.991 10 C 0.097 3.903 11 N -0.657 5.657 12 C 0.077 3.923 13 C -0.100 4.100 14 C -0.104 4.104 15 C -0.118 4.118 16 C -0.105 4.105 17 C 0.060 3.940 18 H 0.051 0.949 19 O -0.361 6.361 20 C 0.047 3.953 21 C -0.133 4.133 22 C -0.187 4.187 23 C -0.199 4.199 24 H 0.261 0.739 25 H 0.061 0.939 26 H 0.003 0.997 27 H 0.333 0.667 28 H 0.072 0.928 29 H 0.020 0.980 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.153 -3.267 -12.363 15.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.119 4.119 3 Si 0.700 3.300 4 H -0.207 1.207 5 H -0.225 1.225 6 H -0.182 1.182 7 C -0.495 4.495 8 H 0.092 0.908 9 C 0.007 3.993 10 C -0.032 4.032 11 N -0.287 5.287 12 C -0.052 4.052 13 C -0.101 4.101 14 C -0.142 4.142 15 C -0.155 4.155 16 C -0.142 4.142 17 C 0.000 4.000 18 H 0.069 0.931 19 O -0.279 6.279 20 C -0.029 4.029 21 C -0.170 4.170 22 C -0.224 4.224 23 C -0.238 4.238 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.021 0.979 27 H 0.151 0.849 28 H 0.090 0.910 29 H 0.038 0.962 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.128 0.872 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.431 -2.638 -12.390 15.217 hybrid contribution 1.238 0.618 -0.009 1.384 sum 9.668 -2.019 -12.399 15.852 Atomic orbital electron populations 1.69894 1.06247 1.26660 1.51135 1.24803 0.94365 0.98581 0.94188 0.87025 0.80983 0.84054 0.77932 1.20696 1.22471 1.18166 1.20114 0.86407 0.94209 1.48727 0.90813 1.19412 0.94843 0.96569 0.88430 1.21665 0.93382 0.97490 0.90661 1.60047 1.63970 1.04892 0.99826 1.21814 0.95471 0.98807 0.89115 1.22065 0.95932 0.96328 0.95727 1.21470 0.96487 0.96254 0.99972 1.22707 0.98662 0.94564 0.99612 1.21810 0.93706 0.96800 1.01926 1.22514 0.95171 0.85650 0.96669 0.93105 1.88437 1.25922 1.26913 1.86645 1.24093 0.83943 0.97226 0.97602 1.22370 0.94880 0.95822 1.03940 1.22733 1.01538 0.92012 1.06100 1.23065 1.01451 0.99558 0.99707 0.92897 0.92064 0.97859 0.84905 0.90976 0.96241 0.91089 0.91529 0.91420 0.91376 0.91256 0.90566 0.89265 0.92247 0.91492 0.87198 0.89854 0.91539 0.91696 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.96 55.43 0.77 -26.61 16 2 C 0.08 2.34 5.46 -17.82 -0.10 2.24 16 3 Si 0.87 21.94 24.74 -169.99 -4.21 17.74 16 4 H -0.28 -7.03 6.90 56.52 0.39 -6.63 16 5 H -0.30 -7.59 7.11 56.52 0.40 -7.18 16 6 H -0.26 -6.17 6.10 56.52 0.34 -5.83 16 7 C -0.46 -12.62 9.27 -34.44 -0.32 -12.93 16 8 H 0.07 2.24 8.06 -52.49 -0.42 1.82 16 9 C 0.01 0.20 1.03 -155.65 -0.16 0.04 16 10 C 0.10 2.05 5.09 -3.82 -0.02 2.03 16 11 N -0.66 -12.56 5.64 -113.77 -0.64 -13.20 16 12 C 0.08 1.30 4.04 -3.82 -0.02 1.28 16 13 C -0.10 -1.43 0.77 -153.67 -0.12 -1.55 16 14 C -0.10 -1.24 6.03 -26.66 -0.16 -1.40 16 15 C -0.12 -1.18 6.68 -23.95 -0.16 -1.34 16 16 C -0.10 -1.19 6.30 -26.14 -0.16 -1.36 16 17 C 0.06 0.81 3.14 -25.36 -0.08 0.73 16 18 H 0.05 0.65 7.99 -51.93 -0.41 0.24 16 19 O -0.36 -5.80 10.79 -32.06 -0.35 -6.14 16 20 C 0.05 0.70 7.42 38.71 0.29 0.99 16 21 C -0.13 -2.03 6.26 -25.89 -0.16 -2.20 16 22 C -0.19 -3.75 9.95 -26.73 -0.27 -4.02 16 23 C -0.20 -4.25 8.61 -26.73 -0.23 -4.48 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.06 1.42 4.27 -51.93 -0.22 1.19 16 26 H 0.00 0.07 8.11 -51.93 -0.42 -0.36 16 27 H 0.33 5.88 7.61 -39.29 -0.30 5.58 16 28 H 0.07 1.39 7.22 -51.93 -0.37 1.01 16 29 H 0.02 0.31 6.52 -51.93 -0.34 -0.03 16 30 H 0.07 0.87 6.80 -51.93 -0.35 0.51 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.92 6.86 -51.93 -0.36 0.57 16 36 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.11 2.07 7.45 -51.93 -0.39 1.69 16 40 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 LS Contribution 324.04 15.07 4.88 4.88 Total: -1.00 -29.78 324.04 -8.65 -38.43 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -7.44 Total: 6.86 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -1.67 Total: -21.96 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.13 Total: -39.81 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.35 Total: -6.14 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.21 Total: 17.74 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.78 -8.65 -38.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687468215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.605 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds