Wall clock time and date at job start Mon Mar 30 2020 07:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99924 * 2 1 4 4 H 1.48503 * 109.46980 * 271.30001 * 3 2 1 5 5 H 1.48502 * 109.47203 * 31.29340 * 3 2 1 6 6 H 1.48499 * 109.47403 * 151.30206 * 3 2 1 7 7 C 1.37876 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00110 * 354.97369 * 7 2 1 9 9 C 1.50701 * 119.99630 * 174.69773 * 7 2 1 10 10 C 1.53005 * 115.55048 * 299.43770 * 9 7 2 11 11 N 1.46902 * 109.46875 * 298.23991 * 10 9 7 12 12 C 1.46902 * 110.99706 * 174.65964 * 11 10 9 13 13 C 1.53000 * 109.47159 * 186.59232 * 12 11 10 14 14 C 1.51080 * 110.61843 * 285.62336 * 13 12 11 15 15 C 1.54961 * 104.87870 * 276.40680 * 14 13 12 16 16 C 1.56245 * 105.86903 * 353.55607 * 15 14 13 17 17 C 1.50711 * 101.86081 * 335.02590 * 16 15 14 18 18 H 1.09000 * 108.84925 * 291.97682 * 17 16 15 19 19 O 1.39681 * 127.81957 * 158.71818 * 17 16 15 20 20 C 1.46171 * 103.81104 * 198.35474 * 19 17 16 21 21 C 1.51591 * 110.62362 * 65.76457 * 13 12 11 22 22 C 1.53005 * 117.49927 * 153.73013 * 9 7 2 23 23 C 1.53000 * 60.00077 * 252.50970 * 22 9 7 24 24 H 0.97003 * 120.00389 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46822 * 58.24078 * 10 9 7 26 26 H 1.08999 * 109.46811 * 178.24094 * 10 9 7 27 27 H 1.00903 * 110.99714 * 298.60606 * 11 10 9 28 28 H 1.09003 * 109.46866 * 306.59209 * 12 11 10 29 29 H 1.08998 * 109.47223 * 66.59279 * 12 11 10 30 30 H 1.08997 * 110.42759 * 35.80752 * 14 13 12 31 31 H 1.08999 * 110.43061 * 158.29206 * 14 13 12 32 32 H 1.08997 * 110.54613 * 234.26403 * 15 14 13 33 33 H 1.08996 * 109.81278 * 112.46383 * 15 14 13 34 34 H 1.09004 * 110.95561 * 216.88828 * 16 15 14 35 35 H 1.09003 * 110.98561 * 93.18564 * 16 15 14 36 36 H 1.08994 * 110.03184 * 147.31037 * 20 19 17 37 37 H 1.09000 * 110.02970 * 268.74544 * 20 19 17 38 38 H 1.08995 * 110.85442 * 202.79891 * 21 13 12 39 39 H 1.08998 * 110.85680 * 326.44510 * 21 13 12 40 40 H 1.09004 * 117.49722 * 0.02562 * 22 9 7 41 41 H 1.08996 * 117.49813 * 145.01673 * 22 9 7 42 42 H 1.08999 * 117.49402 * 252.51295 * 23 22 9 43 43 H 1.08996 * 117.51521 * 107.47925 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4690 2.0623 -1.3998 5 1 1.4605 2.6446 0.7272 6 1 3.5601 1.4325 0.6723 7 6 2.0045 -1.1940 -0.0005 8 1 1.4676 -2.1276 0.0810 9 6 3.5066 -1.1967 -0.1211 10 6 4.0669 -0.5751 -1.4021 11 7 3.5909 -1.3366 -2.5646 12 6 4.0049 -0.6950 -3.8196 13 6 3.3564 -1.4194 -5.0009 14 6 4.0315 -2.7487 -5.2453 15 6 5.2715 -2.4120 -6.1114 16 6 5.1486 -0.8943 -6.4618 17 6 3.6620 -0.6710 -6.3540 18 1 3.1653 -1.2117 -7.1596 19 8 2.9895 0.5373 -6.1565 20 6 1.6659 0.1278 -5.6905 21 6 1.8509 -1.2442 -4.9735 22 6 4.2613 -2.3862 0.4761 23 6 4.3189 -1.0205 1.1635 24 1 -0.4851 0.8400 -0.0004 25 1 3.7299 0.4584 -1.4819 26 1 5.1562 -0.6009 -1.3720 27 1 3.9096 -2.2932 -2.5254 28 1 3.6892 0.3484 -3.8155 29 1 5.0896 -0.7460 -3.9132 30 1 4.3309 -3.2027 -4.3007 31 1 3.3689 -3.4164 -5.7960 32 1 5.2748 -3.0091 -7.0233 33 1 6.1817 -2.5931 -5.5397 34 1 5.4995 -0.6985 -7.4751 35 1 5.6882 -0.2819 -5.7394 36 1 1.2720 0.8647 -4.9907 37 1 0.9893 0.0180 -6.5380 38 1 1.3573 -2.0418 -5.5286 39 1 1.4841 -1.1988 -3.9481 40 1 3.6711 -3.1670 0.9559 41 1 5.1570 -2.7262 -0.0436 42 1 5.2525 -0.4621 1.0959 43 1 3.7667 -0.9023 2.0958 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687468215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:24 Heat of formation + Delta-G solvation = -22.411050 kcal Electronic energy + Delta-G solvation = -21607.925260 eV Core-core repulsion = 18653.394337 eV Total energy + Delta-G solvation = -2954.530923 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.13218 -39.02392 -37.24523 -35.43960 -34.16356 -32.66719 -29.13065 -28.77586 -27.89818 -26.66628 -24.56938 -23.08901 -23.02627 -21.44303 -20.83577 -19.90518 -18.38629 -17.72508 -17.11495 -16.63929 -16.52910 -16.23320 -15.73474 -15.26321 -15.01319 -14.94507 -14.70689 -14.32217 -13.64860 -13.62843 -13.42690 -13.27980 -12.95313 -12.87124 -12.55675 -12.33491 -12.13544 -12.10129 -12.06355 -11.63632 -11.50420 -11.38384 -11.20712 -11.08276 -10.92996 -10.54257 -10.38543 -10.23045 -9.03523 -8.20430 -6.18693 1.32377 1.36382 1.47178 2.40439 2.42894 3.01426 3.27889 3.53060 3.58364 3.70747 3.89841 4.06834 4.08108 4.21216 4.24789 4.34180 4.35069 4.41750 4.44635 4.47408 4.50523 4.58851 4.66652 4.70203 4.84836 4.89986 4.91637 4.94921 4.99727 5.07043 5.11872 5.14356 5.25306 5.34671 5.38649 5.45433 5.47604 5.53324 5.79231 5.95631 6.30462 6.40382 6.72385 6.83500 7.45460 8.96111 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.020625 B = 0.006979 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.221350 B = 4010.809368 C = 4650.489017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.028 3.972 3 Si 0.929 3.071 4 H -0.284 1.284 5 H -0.303 1.303 6 H -0.232 1.232 7 C -0.449 4.449 8 H 0.029 0.971 9 C -0.022 4.022 10 C 0.104 3.896 11 N -0.674 5.674 12 C 0.085 3.915 13 C -0.102 4.102 14 C -0.103 4.103 15 C -0.108 4.108 16 C -0.105 4.105 17 C 0.057 3.943 18 H 0.065 0.935 19 O -0.381 6.381 20 C 0.047 3.953 21 C -0.132 4.132 22 C -0.163 4.163 23 C -0.194 4.194 24 H 0.260 0.740 25 H 0.038 0.962 26 H 0.031 0.969 27 H 0.342 0.658 28 H 0.039 0.961 29 H 0.038 0.962 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.300 -4.034 -13.811 18.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.168 4.168 3 Si 0.756 3.244 4 H -0.211 1.211 5 H -0.231 1.231 6 H -0.155 1.155 7 C -0.487 4.487 8 H 0.047 0.953 9 C -0.023 4.023 10 C -0.025 4.025 11 N -0.305 5.305 12 C -0.044 4.044 13 C -0.103 4.103 14 C -0.141 4.141 15 C -0.145 4.145 16 C -0.142 4.142 17 C -0.002 4.002 18 H 0.083 0.917 19 O -0.301 6.301 20 C -0.028 4.028 21 C -0.169 4.169 22 C -0.200 4.200 23 C -0.232 4.232 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.162 0.838 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.120 0.880 42 H 0.110 0.890 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.612 -3.426 -13.833 18.383 hybrid contribution 0.206 0.761 0.446 0.906 sum 11.818 -2.665 -13.386 18.054 Atomic orbital electron populations 1.70039 1.08056 1.27295 1.53849 1.25513 0.94897 1.01974 0.94435 0.86091 0.80686 0.79862 0.77715 1.21068 1.23121 1.15471 1.20267 0.89262 0.92171 1.46979 0.95294 1.19328 0.92271 1.00249 0.90431 1.21474 0.94691 0.96121 0.90247 1.59948 1.64877 1.05440 1.00248 1.21726 0.96530 0.97104 0.89015 1.22086 0.94767 0.98070 0.95368 1.21503 0.97382 0.94742 1.00487 1.22687 0.97896 0.93621 1.00318 1.21900 0.91758 0.97628 1.02915 1.22780 0.96793 0.84482 0.96190 0.91741 1.88408 1.26402 1.28551 1.86705 1.24088 0.84319 0.96327 0.98103 1.22281 0.96224 0.96780 1.01655 1.22780 1.01736 0.91013 1.04472 1.23078 1.01658 1.00678 0.97818 0.93141 0.94414 0.95100 0.83844 0.94240 0.94443 0.91457 0.90398 0.89150 0.90341 0.89279 0.91581 0.91465 0.89724 0.89516 0.91554 0.90608 0.87999 0.89009 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.58 13.96 21.45 0.30 -60.28 16 2 C 0.03 1.67 5.46 84.66 0.46 2.13 16 3 Si 0.93 46.34 24.74 68.60 1.70 48.04 16 4 H -0.28 -14.19 6.90 99.48 0.69 -13.50 16 5 H -0.30 -15.28 7.11 99.48 0.71 -14.57 16 6 H -0.23 -10.47 6.10 99.48 0.61 -9.86 16 7 C -0.45 -25.48 9.27 25.60 0.24 -25.24 16 8 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 9 C -0.02 -0.97 1.03 -52.92 -0.05 -1.02 16 10 C 0.10 4.23 5.09 86.30 0.44 4.67 16 11 N -0.67 -25.32 5.64 -513.87 -2.90 -28.22 16 12 C 0.09 2.79 4.04 86.30 0.35 3.14 16 13 C -0.10 -2.80 0.77 -51.64 -0.04 -2.84 16 14 C -0.10 -2.16 6.03 30.64 0.18 -1.98 16 15 C -0.11 -1.72 6.68 32.39 0.22 -1.51 16 16 C -0.10 -2.04 6.30 30.98 0.20 -1.84 16 17 C 0.06 1.42 3.14 31.48 0.10 1.52 16 18 H 0.06 1.45 7.99 -2.39 -0.02 1.44 16 19 O -0.38 -12.04 10.79 -137.62 -1.48 -13.53 16 20 C 0.05 1.43 7.42 72.99 0.54 1.97 16 21 C -0.13 -4.07 6.26 31.14 0.19 -3.87 16 22 C -0.16 -6.11 9.95 30.60 0.30 -5.81 16 23 C -0.19 -7.74 8.61 30.60 0.26 -7.48 16 24 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 25 H 0.04 1.71 4.27 -2.39 -0.01 1.70 16 26 H 0.03 1.09 8.11 -2.39 -0.02 1.07 16 27 H 0.34 11.57 7.61 -89.69 -0.68 10.89 16 28 H 0.04 1.54 7.22 -2.39 -0.02 1.52 16 29 H 0.04 1.09 6.52 -2.39 -0.02 1.07 16 30 H 0.07 1.46 6.80 -2.39 -0.02 1.44 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 1.42 6.86 -2.39 -0.02 1.41 16 36 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.07 2.64 7.45 -2.39 -0.02 2.62 16 40 H 0.08 2.95 8.14 -2.38 -0.02 2.93 16 41 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 42 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 43 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -67.39 324.04 1.18 -66.21 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.18 Total: 25.93 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 3.39 Total: -38.16 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -2.60 Total: -88.49 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -1.48 Total: -13.53 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.70 Total: 48.04 kcal Total: -67.39 1.18 -66.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687468215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.795 kcal (2) G-P(sol) polarization free energy of solvation -67.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds