Wall clock time and date at job start Mon Mar 30 2020 07:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 119.99801 * 2 1 4 4 H 1.48506 * 109.47147 * 268.22543 * 3 2 1 5 5 H 1.48492 * 109.47525 * 28.22859 * 3 2 1 6 6 H 1.48505 * 109.46898 * 148.23032 * 3 2 1 7 7 C 1.37872 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00606 * 1.65543 * 7 2 1 9 9 C 1.50700 * 120.00066 * 181.66121 * 7 2 1 10 10 C 1.53002 * 115.56551 * 85.67460 * 9 7 2 11 11 N 1.46903 * 109.46666 * 39.75731 * 10 9 7 12 12 C 1.46905 * 110.99669 * 184.75861 * 11 10 9 13 13 C 1.52999 * 109.46845 * 179.80631 * 12 11 10 14 14 C 1.54047 * 111.97809 * 65.57688 * 13 12 11 15 15 C 1.53861 * 104.61915 * 99.18321 * 14 13 12 16 16 C 1.54802 * 103.19040 * 37.38009 * 15 14 13 17 17 C 1.54279 * 104.51874 * 323.06968 * 16 15 14 18 18 H 1.08998 * 111.96512 * 260.44478 * 17 16 15 19 19 O 1.43960 * 108.54369 * 137.04913 * 17 16 15 20 20 C 1.44521 * 106.82601 * 218.75797 * 19 17 16 21 21 C 1.54749 * 112.03119 * 301.58796 * 13 12 11 22 22 C 1.53005 * 117.49643 * 299.98962 * 9 7 2 23 23 C 1.53000 * 60.00053 * 252.50682 * 22 9 7 24 24 H 0.97000 * 119.99906 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47320 * 159.75975 * 10 9 7 26 26 H 1.08993 * 109.46914 * 279.76031 * 10 9 7 27 27 H 1.00900 * 110.99700 * 60.80979 * 11 10 9 28 28 H 1.08998 * 109.46765 * 299.80737 * 12 11 10 29 29 H 1.08996 * 109.46958 * 59.80662 * 12 11 10 30 30 H 1.09003 * 110.49725 * 216.44427 * 14 13 12 31 31 H 1.09000 * 110.50288 * 339.12320 * 14 13 12 32 32 H 1.08997 * 109.89112 * 279.22364 * 15 14 13 33 33 H 1.08998 * 111.35333 * 156.22619 * 15 14 13 34 34 H 1.09000 * 110.42605 * 204.30653 * 16 15 14 35 35 H 1.09003 * 110.42297 * 81.82769 * 16 15 14 36 36 H 1.09002 * 110.73982 * 160.20334 * 20 19 17 37 37 H 1.09000 * 110.73641 * 283.34864 * 20 19 17 38 38 H 1.08999 * 110.98361 * 19.79301 * 21 13 12 39 39 H 1.09000 * 110.98207 * 143.57945 * 21 13 12 40 40 H 1.09001 * 117.50064 * 145.01667 * 22 9 7 41 41 H 1.09005 * 117.49788 * 359.97438 * 22 9 7 42 42 H 1.09002 * 117.49484 * 107.48602 * 23 22 9 43 43 H 1.08991 * 117.50033 * 252.48608 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5342 2.0247 -1.3995 5 1 1.4284 2.6631 0.6622 6 1 3.5275 1.4512 0.7372 7 6 2.0045 -1.1940 -0.0005 8 1 1.4649 -2.1292 -0.0280 9 6 3.5110 -1.1944 0.0373 10 6 4.1365 -1.1111 1.4311 11 7 3.3634 -1.9405 2.3651 12 6 3.8670 -1.7967 3.7376 13 6 3.0357 -2.6697 4.6799 14 6 3.2129 -4.1706 4.3817 15 6 4.2333 -4.6562 5.4258 16 6 3.8494 -3.8555 6.6939 17 6 3.4327 -2.4679 6.1637 18 1 4.2329 -1.7350 6.2663 19 8 2.2445 -2.0495 6.8605 20 6 1.4016 -1.3883 5.8905 21 6 1.5338 -2.2990 4.6409 22 6 4.2467 -0.4987 -1.1098 23 6 4.2441 -2.0259 -1.0174 24 1 -0.4850 0.8400 0.0004 25 1 5.1644 -1.4715 1.3903 26 1 4.1279 -0.0758 1.7719 27 1 3.3673 -2.9078 2.0780 28 1 4.9100 -2.1109 3.7766 29 1 3.7898 -0.7540 4.0456 30 1 2.2728 -4.7025 4.5283 31 1 3.5812 -4.3173 3.3663 32 1 5.2434 -4.4055 5.1018 33 1 4.1408 -5.7277 5.6028 34 1 4.7066 -3.7660 7.3613 35 1 3.0148 -4.3331 7.2071 36 1 0.3683 -1.3548 6.2361 37 1 1.7696 -0.3840 5.6803 38 1 1.2906 -1.7505 3.7309 39 1 0.9099 -3.1874 4.7377 40 1 5.1762 0.0184 -0.8715 41 1 3.6409 -0.0411 -1.8921 42 1 3.6366 -2.5727 -1.7385 43 1 5.1719 -2.5136 -0.7186 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687468216.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:29 Heat of formation + Delta-G solvation = -23.548141 kcal Electronic energy + Delta-G solvation = -21354.109863 eV Core-core repulsion = 18399.529633 eV Total energy + Delta-G solvation = -2954.580231 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.34555 -37.34033 -35.72409 -34.21818 -31.92953 -31.36521 -28.24295 -27.43487 -25.96181 -24.86315 -23.19039 -21.73868 -21.51127 -20.52929 -19.10142 -18.64576 -16.60560 -16.04675 -15.85740 -15.26455 -14.96121 -14.51431 -14.24216 -13.90986 -13.66989 -13.51781 -13.12050 -12.76737 -12.42674 -12.31471 -11.88970 -11.75674 -11.67442 -11.16581 -11.04987 -10.89452 -10.64037 -10.57743 -10.46026 -10.40560 -10.31260 -10.20785 -9.97966 -9.47721 -9.44272 -9.02376 -8.43003 -8.38209 -7.55814 -5.95558 -3.93638 3.36180 3.45285 3.48024 3.97249 4.39579 4.54319 4.55867 4.83917 4.96399 5.05724 5.18780 5.28484 5.32577 5.34674 5.43198 5.47783 5.55480 5.65509 5.72137 5.83953 5.84887 5.89793 5.94238 5.98666 6.03532 6.10025 6.18211 6.23730 6.25393 6.31689 6.34895 6.46109 6.46671 6.54798 6.72944 6.75364 7.06585 7.10766 7.14657 7.77078 7.91125 8.14671 8.64828 9.07144 9.69061 11.17208 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022574 B = 0.006168 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.065867 B = 4538.461055 C = 5160.076349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.079 3.921 3 Si 0.879 3.121 4 H -0.284 1.284 5 H -0.298 1.298 6 H -0.262 1.262 7 C -0.452 4.452 8 H 0.076 0.924 9 C 0.005 3.995 10 C 0.097 3.903 11 N -0.652 5.652 12 C 0.078 3.922 13 C -0.084 4.084 14 C -0.110 4.110 15 C -0.124 4.124 16 C -0.121 4.121 17 C 0.078 3.922 18 H 0.072 0.928 19 O -0.382 6.382 20 C 0.044 3.956 21 C -0.139 4.139 22 C -0.204 4.204 23 C -0.187 4.187 24 H 0.260 0.740 25 H 0.002 0.998 26 H 0.063 0.937 27 H 0.337 0.663 28 H 0.019 0.981 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.110 0.890 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.371 -5.925 10.441 14.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.122 4.122 3 Si 0.709 3.291 4 H -0.210 1.210 5 H -0.226 1.226 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.094 0.906 9 C 0.004 3.996 10 C -0.032 4.032 11 N -0.283 5.283 12 C -0.052 4.052 13 C -0.085 4.085 14 C -0.147 4.147 15 C -0.161 4.161 16 C -0.159 4.159 17 C 0.020 3.980 18 H 0.090 0.910 19 O -0.301 6.301 20 C -0.032 4.032 21 C -0.176 4.176 22 C -0.242 4.242 23 C -0.224 4.224 24 H 0.070 0.930 25 H 0.020 0.980 26 H 0.082 0.918 27 H 0.156 0.844 28 H 0.037 0.963 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.129 0.871 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.657 -5.367 10.749 14.247 hybrid contribution 1.366 0.654 -0.337 1.551 sum 9.023 -4.714 10.412 14.562 Atomic orbital electron populations 1.69892 1.06204 1.26566 1.51572 1.24841 0.94412 0.98544 0.94422 0.86912 0.80313 0.83933 0.77975 1.21032 1.22560 1.18733 1.20001 0.85751 0.94173 1.49032 0.90620 1.19510 0.95428 0.98740 0.85907 1.21675 0.91257 0.96984 0.93319 1.60172 1.55649 1.13113 0.99326 1.21792 0.94379 0.98859 0.90199 1.22406 0.96621 0.95746 0.93734 1.22207 0.99585 0.94060 0.98865 1.22339 0.99346 0.99473 0.94992 1.22475 1.01226 0.94598 0.97613 1.23499 0.88250 0.95483 0.90785 0.90970 1.88896 1.30573 1.76577 1.34101 1.23682 0.95030 0.95955 0.88525 1.23258 0.94008 1.00308 1.00037 1.22957 1.01590 0.94855 1.04773 1.22874 1.01077 0.92873 1.05551 0.92981 0.97988 0.91844 0.84421 0.96270 0.91539 0.91231 0.91170 0.91813 0.91347 0.91599 0.90475 0.89352 0.92302 0.87115 0.91102 0.91325 0.89457 0.89658 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.96 55.43 0.77 -26.41 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.80 25.05 -169.99 -4.26 17.54 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.30 -7.54 7.11 56.52 0.40 -7.13 16 6 H -0.26 -6.16 5.42 56.52 0.31 -5.86 16 7 C -0.45 -12.12 8.75 -34.44 -0.30 -12.42 16 8 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 9 C 0.01 0.12 1.19 -155.65 -0.19 -0.07 16 10 C 0.10 1.93 5.58 -3.82 -0.02 1.91 16 11 N -0.65 -11.99 5.00 -113.78 -0.57 -12.56 16 12 C 0.08 1.20 4.70 -3.82 -0.02 1.18 16 13 C -0.08 -1.18 0.65 -152.03 -0.10 -1.28 16 14 C -0.11 -1.37 5.80 -25.74 -0.15 -1.52 16 15 C -0.12 -1.31 6.85 -25.33 -0.17 -1.49 16 16 C -0.12 -1.37 6.55 -25.11 -0.16 -1.54 16 17 C 0.08 1.04 3.98 -25.05 -0.10 0.94 16 18 H 0.07 0.93 7.86 -51.93 -0.41 0.53 16 19 O -0.38 -5.75 11.04 -35.23 -0.39 -6.14 16 20 C 0.04 0.64 7.72 38.31 0.30 0.94 16 21 C -0.14 -2.13 6.19 -24.65 -0.15 -2.29 16 22 C -0.20 -4.29 7.62 -26.73 -0.20 -4.50 16 23 C -0.19 -3.70 9.88 -26.73 -0.26 -3.96 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.00 0.04 7.95 -51.93 -0.41 -0.37 16 26 H 0.06 1.35 6.35 -51.93 -0.33 1.02 16 27 H 0.34 5.97 7.15 -39.29 -0.28 5.69 16 28 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 0.88 7.30 -51.93 -0.38 0.50 16 31 H 0.07 0.89 6.48 -51.93 -0.34 0.56 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.90 7.99 -51.93 -0.42 0.49 16 36 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.11 2.06 7.34 -51.93 -0.38 1.68 16 39 H 0.07 1.05 7.32 -51.93 -0.38 0.67 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.09 1.95 7.22 -51.93 -0.37 1.57 16 42 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 43 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 LS Contribution 326.30 15.07 4.92 4.92 Total: -1.00 -28.88 326.30 -8.73 -37.62 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -7.58 Total: 7.01 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -1.63 Total: -21.97 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.20 Total: -38.98 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: -0.39 Total: -6.14 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.26 Total: 17.54 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.88 -8.73 -37.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687468216.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.068 kcal (2) G-P(sol) polarization free energy of solvation -28.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds