Wall clock time and date at job start Mon Mar 30 2020 07:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 119.99801 * 2 1 4 4 H 1.48506 * 109.47147 * 268.22543 * 3 2 1 5 5 H 1.48492 * 109.47525 * 28.22859 * 3 2 1 6 6 H 1.48505 * 109.46898 * 148.23032 * 3 2 1 7 7 C 1.37872 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00606 * 1.65543 * 7 2 1 9 9 C 1.50700 * 120.00066 * 181.66121 * 7 2 1 10 10 C 1.53002 * 115.56551 * 85.67460 * 9 7 2 11 11 N 1.46903 * 109.46666 * 39.75731 * 10 9 7 12 12 C 1.46905 * 110.99669 * 184.75861 * 11 10 9 13 13 C 1.52999 * 109.46845 * 179.80631 * 12 11 10 14 14 C 1.54047 * 111.97809 * 65.57688 * 13 12 11 15 15 C 1.53861 * 104.61915 * 99.18321 * 14 13 12 16 16 C 1.54802 * 103.19040 * 37.38009 * 15 14 13 17 17 C 1.54279 * 104.51874 * 323.06968 * 16 15 14 18 18 H 1.08998 * 111.96512 * 260.44478 * 17 16 15 19 19 O 1.43960 * 108.54369 * 137.04913 * 17 16 15 20 20 C 1.44521 * 106.82601 * 218.75797 * 19 17 16 21 21 C 1.54749 * 112.03119 * 301.58796 * 13 12 11 22 22 C 1.53005 * 117.49643 * 299.98962 * 9 7 2 23 23 C 1.53000 * 60.00053 * 252.50682 * 22 9 7 24 24 H 0.97000 * 119.99906 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47320 * 159.75975 * 10 9 7 26 26 H 1.08993 * 109.46914 * 279.76031 * 10 9 7 27 27 H 1.00900 * 110.99700 * 60.80979 * 11 10 9 28 28 H 1.08998 * 109.46765 * 299.80737 * 12 11 10 29 29 H 1.08996 * 109.46958 * 59.80662 * 12 11 10 30 30 H 1.09003 * 110.49725 * 216.44427 * 14 13 12 31 31 H 1.09000 * 110.50288 * 339.12320 * 14 13 12 32 32 H 1.08997 * 109.89112 * 279.22364 * 15 14 13 33 33 H 1.08998 * 111.35333 * 156.22619 * 15 14 13 34 34 H 1.09000 * 110.42605 * 204.30653 * 16 15 14 35 35 H 1.09003 * 110.42297 * 81.82769 * 16 15 14 36 36 H 1.09002 * 110.73982 * 160.20334 * 20 19 17 37 37 H 1.09000 * 110.73641 * 283.34864 * 20 19 17 38 38 H 1.08999 * 110.98361 * 19.79301 * 21 13 12 39 39 H 1.09000 * 110.98207 * 143.57945 * 21 13 12 40 40 H 1.09001 * 117.50064 * 145.01667 * 22 9 7 41 41 H 1.09005 * 117.49788 * 359.97438 * 22 9 7 42 42 H 1.09002 * 117.49484 * 107.48602 * 23 22 9 43 43 H 1.08991 * 117.50033 * 252.48608 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5342 2.0247 -1.3995 5 1 1.4284 2.6631 0.6622 6 1 3.5275 1.4512 0.7372 7 6 2.0045 -1.1940 -0.0005 8 1 1.4649 -2.1292 -0.0280 9 6 3.5110 -1.1944 0.0373 10 6 4.1365 -1.1111 1.4311 11 7 3.3634 -1.9405 2.3651 12 6 3.8670 -1.7967 3.7376 13 6 3.0357 -2.6697 4.6799 14 6 3.2129 -4.1706 4.3817 15 6 4.2333 -4.6562 5.4258 16 6 3.8494 -3.8555 6.6939 17 6 3.4327 -2.4679 6.1637 18 1 4.2329 -1.7350 6.2663 19 8 2.2445 -2.0495 6.8605 20 6 1.4016 -1.3883 5.8905 21 6 1.5338 -2.2990 4.6409 22 6 4.2467 -0.4987 -1.1098 23 6 4.2441 -2.0259 -1.0174 24 1 -0.4850 0.8400 0.0004 25 1 5.1644 -1.4715 1.3903 26 1 4.1279 -0.0758 1.7719 27 1 3.3673 -2.9078 2.0780 28 1 4.9100 -2.1109 3.7766 29 1 3.7898 -0.7540 4.0456 30 1 2.2728 -4.7025 4.5283 31 1 3.5812 -4.3173 3.3663 32 1 5.2434 -4.4055 5.1018 33 1 4.1408 -5.7277 5.6028 34 1 4.7066 -3.7660 7.3613 35 1 3.0148 -4.3331 7.2071 36 1 0.3683 -1.3548 6.2361 37 1 1.7696 -0.3840 5.6803 38 1 1.2906 -1.7505 3.7309 39 1 0.9099 -3.1874 4.7377 40 1 5.1762 0.0184 -0.8715 41 1 3.6409 -0.0411 -1.8921 42 1 3.6366 -2.5727 -1.7385 43 1 5.1719 -2.5136 -0.7186 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687468216.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:29 Heat of formation + Delta-G solvation = -41.593289 kcal Electronic energy + Delta-G solvation = -21354.892360 eV Core-core repulsion = 18399.529633 eV Total energy + Delta-G solvation = -2955.362727 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.45524 -38.98842 -36.91428 -35.46996 -34.06246 -32.58469 -29.40979 -28.54694 -27.71586 -26.42257 -24.54571 -23.25882 -22.80050 -21.47532 -20.82296 -19.90230 -18.27491 -17.44173 -17.07618 -16.83163 -16.20844 -16.02299 -15.49065 -15.37981 -15.06657 -14.70129 -14.66089 -14.31146 -14.12486 -13.61056 -13.37076 -12.99246 -12.90186 -12.77079 -12.35012 -12.26576 -12.07268 -11.99718 -11.87674 -11.64529 -11.62673 -11.45677 -11.33283 -11.24194 -10.87935 -10.56309 -10.47135 -10.16546 -8.94592 -8.13554 -6.13668 1.38188 1.41063 1.51115 2.46687 2.88126 3.08337 3.24485 3.35750 3.53269 3.78742 3.90624 4.15053 4.18146 4.23281 4.25034 4.34137 4.38490 4.44127 4.46342 4.50479 4.58403 4.65887 4.70878 4.81061 4.88165 4.88329 4.89284 4.92982 5.02613 5.11207 5.12480 5.17996 5.26435 5.30691 5.38894 5.41178 5.46074 5.53031 5.83569 5.98103 6.36337 6.51182 6.74536 6.90565 7.51949 9.02935 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022574 B = 0.006168 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.065867 B = 4538.461055 C = 5160.076349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.022 3.978 3 Si 0.933 3.067 4 H -0.278 1.278 5 H -0.308 1.308 6 H -0.237 1.237 7 C -0.437 4.437 8 H 0.031 0.969 9 C -0.023 4.023 10 C 0.106 3.894 11 N -0.673 5.673 12 C 0.083 3.917 13 C -0.082 4.082 14 C -0.110 4.110 15 C -0.115 4.115 16 C -0.117 4.117 17 C 0.074 3.926 18 H 0.079 0.921 19 O -0.392 6.392 20 C 0.046 3.954 21 C -0.138 4.138 22 C -0.202 4.202 23 C -0.166 4.166 24 H 0.257 0.743 25 H 0.031 0.969 26 H 0.049 0.951 27 H 0.339 0.661 28 H 0.041 0.959 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.598 -6.426 11.370 17.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.174 4.174 3 Si 0.761 3.239 4 H -0.204 1.204 5 H -0.236 1.236 6 H -0.160 1.160 7 C -0.475 4.475 8 H 0.049 0.951 9 C -0.024 4.024 10 C -0.023 4.023 11 N -0.304 5.304 12 C -0.046 4.046 13 C -0.083 4.083 14 C -0.148 4.148 15 C -0.152 4.152 16 C -0.155 4.155 17 C 0.016 3.984 18 H 0.097 0.903 19 O -0.312 6.312 20 C -0.030 4.030 21 C -0.176 4.176 22 C -0.240 4.240 23 C -0.203 4.203 24 H 0.066 0.934 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.159 0.841 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.920 -5.887 11.679 17.038 hybrid contribution 0.309 0.708 -0.655 1.013 sum 11.229 -5.179 11.024 16.566 Atomic orbital electron populations 1.70050 1.08100 1.27102 1.54500 1.25580 0.94939 1.02051 0.94825 0.86021 0.79975 0.79612 0.78323 1.20427 1.23639 1.15996 1.20119 0.88557 0.92084 1.46758 0.95077 1.19476 0.92865 1.01889 0.88172 1.21481 0.92557 0.96650 0.91621 1.60075 1.56584 1.13197 1.00572 1.21758 0.95584 0.98589 0.88680 1.22381 0.95021 0.96618 0.94236 1.22197 1.00207 0.92860 0.99512 1.22310 0.98997 1.00305 0.93579 1.22475 1.01741 0.93089 0.98174 1.23668 0.87781 0.96977 0.89965 0.90294 1.88887 1.31229 1.76661 1.34419 1.23658 0.95724 0.95491 0.88110 1.23145 0.95625 1.00059 0.98749 1.22983 1.02037 0.95927 1.03012 1.22903 1.01626 0.92381 1.03348 0.93370 0.95074 0.93229 0.84133 0.94142 0.92674 0.91775 0.91420 0.90756 0.89704 0.89710 0.90989 0.88337 0.92671 0.90874 0.91057 0.88448 0.91246 0.90670 0.87872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.04 13.96 21.45 0.30 -59.74 16 2 C 0.02 1.24 5.47 84.65 0.46 1.71 16 3 Si 0.93 45.15 25.05 68.60 1.72 46.87 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.31 -15.33 7.11 99.48 0.71 -14.62 16 6 H -0.24 -10.36 5.42 99.48 0.54 -9.82 16 7 C -0.44 -23.96 8.75 25.60 0.22 -23.74 16 8 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 9 C -0.02 -0.99 1.19 -52.92 -0.06 -1.05 16 10 C 0.11 3.98 5.58 86.30 0.48 4.46 16 11 N -0.67 -24.15 5.00 -513.89 -2.57 -26.72 16 12 C 0.08 2.43 4.70 86.30 0.41 2.84 16 13 C -0.08 -2.20 0.65 -50.58 -0.03 -2.23 16 14 C -0.11 -2.57 5.80 31.24 0.18 -2.39 16 15 C -0.11 -2.06 6.85 31.50 0.22 -1.84 16 16 C -0.12 -2.31 6.55 31.64 0.21 -2.10 16 17 C 0.07 1.83 3.98 31.68 0.13 1.95 16 18 H 0.08 1.85 7.86 -2.39 -0.02 1.83 16 19 O -0.39 -11.36 11.04 -148.98 -1.65 -13.00 16 20 C 0.05 1.34 7.72 72.73 0.56 1.91 16 21 C -0.14 -4.34 6.19 31.94 0.20 -4.14 16 22 C -0.20 -7.91 7.62 30.60 0.23 -7.68 16 23 C -0.17 -6.09 9.88 30.60 0.30 -5.79 16 24 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 25 H 0.03 1.00 7.95 -2.39 -0.02 0.98 16 26 H 0.05 1.98 6.35 -2.39 -0.02 1.97 16 27 H 0.34 11.74 7.15 -89.69 -0.64 11.10 16 28 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 1.55 7.30 -2.39 -0.02 1.54 16 31 H 0.07 1.61 6.48 -2.39 -0.02 1.59 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.07 1.51 7.99 -2.39 -0.02 1.49 16 36 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.07 2.87 7.34 -2.39 -0.02 2.86 16 39 H 0.07 2.18 7.32 -2.39 -0.02 2.16 16 40 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 41 H 0.07 2.97 7.22 -2.38 -0.02 2.95 16 42 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 43 H 0.10 3.10 8.08 -2.39 -0.02 3.08 16 Total: -1.00 -64.00 326.30 1.47 -62.53 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.17 Total: 28.16 kcal Atomic # 6 Polarization: -41.60 SS G_CDS: 3.50 Total: -38.10 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -2.27 Total: -86.46 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -1.65 Total: -13.00 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.72 Total: 46.87 kcal Total: -64.00 1.47 -62.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687468216.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.939 kcal (2) G-P(sol) polarization free energy of solvation -64.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds