Wall clock time and date at job start Mon Mar 30 2020 07:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99836 * 2 1 4 4 H 1.48500 * 109.47165 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47652 * 300.00504 * 3 2 1 6 6 H 1.48504 * 109.47094 * 60.00356 * 3 2 1 7 7 C 1.38803 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99985 * 160.35780 * 7 2 1 9 9 N 1.36943 * 120.00020 * 340.36515 * 7 2 1 10 10 C 1.46499 * 119.99708 * 320.45995 * 9 7 2 11 11 C 1.53004 * 109.47084 * 270.00167 * 10 9 7 12 12 H 1.08997 * 109.85832 * 305.70006 * 11 10 9 13 13 C 1.55374 * 109.86728 * 184.71559 * 11 10 9 14 14 C 1.53883 * 101.14801 * 218.85168 * 13 11 10 15 15 H 1.09003 * 111.43486 * 279.02692 * 14 13 11 16 16 C 1.52010 * 114.90411 * 151.23601 * 14 13 11 17 17 C 1.53675 * 107.32154 * 186.35569 * 16 14 13 18 18 C 1.52582 * 111.48349 * 58.31519 * 17 16 14 19 19 C 1.53782 * 111.32080 * 305.09210 * 18 17 16 20 20 C 1.51306 * 107.41628 * 57.17319 * 19 18 17 21 21 H 1.08994 * 108.77015 * 53.26478 * 20 19 18 22 22 O 1.41429 * 118.45305 * 177.42496 * 20 19 18 23 23 C 1.46495 * 119.99975 * 140.46136 * 9 7 2 24 24 C 1.52998 * 117.50065 * 3.28775 * 23 9 7 25 25 C 1.53002 * 117.50009 * 294.66277 * 23 9 7 26 26 H 0.97003 * 119.99697 * 355.01473 * 1 2 3 27 27 H 1.08996 * 109.47105 * 150.00212 * 10 9 7 28 28 H 1.09004 * 109.47249 * 30.00273 * 10 9 7 29 29 H 1.08997 * 111.08625 * 336.82517 * 13 11 10 30 30 H 1.09001 * 111.08201 * 100.84455 * 13 11 10 31 31 H 1.08994 * 109.88723 * 305.81515 * 16 14 13 32 32 H 1.09008 * 109.88121 * 66.82717 * 16 14 13 33 33 H 1.08996 * 109.07926 * 178.83681 * 17 16 14 34 34 H 1.09008 * 109.07814 * 297.80008 * 17 16 14 35 35 H 1.08997 * 109.10901 * 65.56600 * 18 17 16 36 36 H 1.08997 * 109.11127 * 184.61700 * 18 17 16 37 37 H 1.09000 * 109.86821 * 176.64861 * 19 18 17 38 38 H 1.08995 * 109.86544 * 297.61818 * 19 18 17 39 39 H 1.09001 * 115.54919 * 148.99561 * 23 9 7 40 40 H 1.08997 * 117.50017 * 359.97438 * 24 23 9 41 41 H 1.09003 * 117.49941 * 145.02244 * 24 23 9 42 42 H 1.09004 * 117.49853 * 214.98309 * 25 23 9 43 43 H 1.08999 * 117.49618 * 0.02562 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0432 -1.2291 -0.3150 9 7 1.3853 -2.3537 0.3975 10 6 0.4634 -2.3310 1.5357 11 6 1.2384 -2.6090 2.8254 12 1 1.7961 -3.5405 2.7287 13 6 0.2533 -2.7051 4.0231 14 6 1.0558 -1.9931 5.1262 15 1 1.7924 -2.6590 5.5759 16 6 0.2132 -1.3041 6.1874 17 6 1.1735 -0.5234 7.0984 18 6 1.9922 0.4925 6.3074 19 6 2.7421 -0.1778 5.1441 20 6 1.7109 -0.8683 4.2786 21 1 0.9413 -0.1461 4.0062 22 8 2.1464 -1.5189 3.1008 23 6 1.6387 -3.6084 -0.3150 24 6 2.6693 -3.5832 -1.4455 25 6 1.1789 -3.6991 -1.7715 26 1 -0.4850 0.8369 0.0730 27 1 -0.3012 -3.0957 1.3993 28 1 -0.0100 -1.3512 1.6004 29 1 -0.6756 -2.1761 3.8103 30 1 0.0582 -3.7443 4.2879 31 1 -0.4897 -0.6181 5.7150 32 1 -0.3300 -2.0482 6.7702 33 1 0.5956 0.0001 7.8600 34 1 1.8508 -1.2245 7.5863 35 1 1.3244 1.2561 5.9087 36 1 2.7149 0.9644 6.9731 37 1 3.2705 0.5762 4.5606 38 1 3.4508 -0.9090 5.5327 39 1 1.5765 -4.5132 0.2896 40 1 3.1585 -2.6330 -1.6595 41 1 3.2855 -4.4715 -1.5848 42 1 0.8146 -4.6637 -2.1251 43 1 0.6883 -2.8250 -2.1997 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687712591.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:49 Heat of formation + Delta-G solvation = -10.875089 kcal Electronic energy + Delta-G solvation = -21639.216941 eV Core-core repulsion = 18685.186255 eV Total energy + Delta-G solvation = -2954.030686 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.93297 -36.97056 -35.86728 -33.26976 -32.19395 -30.71577 -29.40465 -28.44083 -25.31437 -23.48730 -21.96476 -21.32872 -21.07692 -20.48609 -19.84744 -19.31637 -16.25167 -15.90419 -15.34655 -15.19754 -14.66066 -14.43595 -14.32951 -13.74216 -13.44749 -13.13690 -12.68490 -12.52595 -12.28382 -11.78934 -11.73101 -11.57365 -11.21897 -11.09617 -10.91231 -10.64473 -10.61555 -10.51785 -10.42566 -10.35867 -10.17157 -9.93933 -9.68084 -9.54671 -9.48023 -9.16223 -8.56828 -8.31726 -6.37843 -5.63090 -3.27296 3.43587 3.51376 3.56650 4.26240 4.59153 4.80017 4.82540 5.04055 5.09270 5.18400 5.22711 5.39880 5.45846 5.50769 5.59585 5.63459 5.67874 5.75944 5.92237 5.98618 5.99566 6.06364 6.09343 6.15701 6.20890 6.25973 6.27710 6.34001 6.36412 6.51359 6.54619 6.58037 6.66148 6.70436 6.76528 6.92748 7.13644 7.32182 7.70191 7.93516 7.99725 8.64879 9.29272 9.91644 10.48159 11.32347 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.018865 B = 0.007388 C = 0.005982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.878243 B = 3788.848636 C = 4679.226024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.017 3.983 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.289 1.289 7 C -0.233 4.233 8 H 0.059 0.941 9 N -0.546 5.546 10 C 0.140 3.860 11 C 0.067 3.933 12 H 0.062 0.938 13 C -0.145 4.145 14 C -0.129 4.129 15 H 0.080 0.920 16 C -0.107 4.107 17 C -0.118 4.118 18 C -0.115 4.115 19 C -0.110 4.110 20 C 0.079 3.921 21 H 0.050 0.950 22 O -0.338 6.338 23 C 0.120 3.880 24 C -0.195 4.195 25 C -0.222 4.222 26 H 0.250 0.750 27 H 0.035 0.965 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.642 -3.780 11.960 12.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.182 4.182 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.216 1.216 7 C -0.362 4.362 8 H 0.077 0.923 9 N -0.262 5.262 10 C 0.014 3.986 11 C 0.007 3.993 12 H 0.080 0.920 13 C -0.183 4.183 14 C -0.147 4.147 15 H 0.099 0.901 16 C -0.144 4.144 17 C -0.155 4.155 18 C -0.153 4.153 19 C -0.148 4.148 20 C 0.020 3.980 21 H 0.068 0.932 22 O -0.257 6.257 23 C 0.011 3.989 24 C -0.233 4.233 25 C -0.263 4.263 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.115 0.885 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.701 -3.550 11.782 12.325 hybrid contribution 0.222 0.814 0.080 0.848 sum 0.923 -2.736 11.861 12.208 Atomic orbital electron populations 1.70064 1.05459 1.25600 1.52309 1.25076 0.94872 0.98442 0.99840 0.86393 0.80047 0.84409 0.76929 1.20088 1.22085 1.21561 1.18895 0.92801 0.84894 1.39644 0.92324 1.43251 1.50500 1.03167 1.29238 1.21292 0.90551 1.02972 0.83815 1.24048 0.90121 0.89315 0.95823 0.91990 1.22995 0.99444 1.00586 0.95279 1.22712 0.98599 0.97533 0.95887 0.90118 1.21424 0.97488 0.98788 0.96719 1.21534 0.98042 0.98066 0.97867 1.21501 0.98870 0.98108 0.96778 1.21345 0.97823 0.99925 0.95717 1.22170 0.95620 0.94405 0.85815 0.93238 1.88494 1.50887 1.45803 1.40478 1.21223 1.00657 0.90665 0.86355 1.22995 0.92124 1.01729 1.06479 1.23353 0.96866 1.00806 1.05281 0.94013 0.94699 0.88320 0.90600 0.91223 0.91549 0.92011 0.92267 0.92294 0.91981 0.91874 0.91285 0.91668 0.89895 0.88495 0.90962 0.91440 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 11.50 55.49 0.64 -25.18 16 2 C 0.02 0.48 4.98 -17.43 -0.09 0.39 16 3 Si 0.89 22.49 29.60 -169.99 -5.03 17.46 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.23 -6.44 8.07 -15.06 -0.12 -6.56 16 8 H 0.06 1.67 6.75 -52.49 -0.35 1.32 16 9 N -0.55 -13.72 2.74 -165.66 -0.45 -14.18 16 10 C 0.14 3.26 4.94 -4.04 -0.02 3.24 16 11 C 0.07 1.33 3.76 -25.47 -0.10 1.23 16 12 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 13 C -0.14 -2.30 6.13 -25.01 -0.15 -2.45 16 14 C -0.13 -1.89 2.77 -89.43 -0.25 -2.14 16 15 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 16 C -0.11 -1.31 5.58 -26.88 -0.15 -1.46 16 17 C -0.12 -1.30 5.84 -26.59 -0.16 -1.45 16 18 C -0.11 -1.41 5.84 -26.54 -0.15 -1.56 16 19 C -0.11 -1.68 5.99 -27.18 -0.16 -1.84 16 20 C 0.08 1.42 2.78 -26.35 -0.07 1.34 16 21 H 0.05 0.99 7.83 -51.93 -0.41 0.58 16 22 O -0.34 -7.48 10.63 -35.12 -0.37 -7.86 16 23 C 0.12 2.65 6.56 -67.93 -0.45 2.21 16 24 C -0.19 -4.02 9.80 -26.73 -0.26 -4.28 16 25 C -0.22 -4.69 10.36 -26.73 -0.28 -4.96 16 26 H 0.25 7.02 8.32 -40.82 -0.34 6.68 16 27 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 28 H 0.10 2.62 5.59 -51.93 -0.29 2.33 16 29 H 0.08 1.23 7.85 -51.93 -0.41 0.83 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.86 7.96 -51.93 -0.41 0.45 16 32 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 40 H 0.10 2.19 6.46 -51.93 -0.34 1.86 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.09 2.21 8.14 -51.93 -0.42 1.79 16 LS Contribution 331.99 15.07 5.00 5.00 Total: -1.00 -29.63 331.99 -10.30 -39.93 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -7.68 Total: 3.12 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -2.41 Total: -18.30 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.18 Total: -39.35 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -0.37 Total: -7.86 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.63 -10.30 -39.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687712591.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.056 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds