Wall clock time and date at job start Mon Mar 30 2020 07:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99836 * 2 1 4 4 H 1.48500 * 109.47165 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47652 * 300.00504 * 3 2 1 6 6 H 1.48504 * 109.47094 * 60.00356 * 3 2 1 7 7 C 1.38803 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99985 * 160.35780 * 7 2 1 9 9 N 1.36943 * 120.00020 * 340.36515 * 7 2 1 10 10 C 1.46499 * 119.99708 * 320.45995 * 9 7 2 11 11 C 1.53004 * 109.47084 * 270.00167 * 10 9 7 12 12 H 1.08997 * 109.85832 * 305.70006 * 11 10 9 13 13 C 1.55374 * 109.86728 * 184.71559 * 11 10 9 14 14 C 1.53883 * 101.14801 * 218.85168 * 13 11 10 15 15 H 1.09003 * 111.43486 * 279.02692 * 14 13 11 16 16 C 1.52010 * 114.90411 * 151.23601 * 14 13 11 17 17 C 1.53675 * 107.32154 * 186.35569 * 16 14 13 18 18 C 1.52582 * 111.48349 * 58.31519 * 17 16 14 19 19 C 1.53782 * 111.32080 * 305.09210 * 18 17 16 20 20 C 1.51306 * 107.41628 * 57.17319 * 19 18 17 21 21 H 1.08994 * 108.77015 * 53.26478 * 20 19 18 22 22 O 1.41429 * 118.45305 * 177.42496 * 20 19 18 23 23 C 1.46495 * 119.99975 * 140.46136 * 9 7 2 24 24 C 1.52998 * 117.50065 * 3.28775 * 23 9 7 25 25 C 1.53002 * 117.50009 * 294.66277 * 23 9 7 26 26 H 0.97003 * 119.99697 * 355.01473 * 1 2 3 27 27 H 1.08996 * 109.47105 * 150.00212 * 10 9 7 28 28 H 1.09004 * 109.47249 * 30.00273 * 10 9 7 29 29 H 1.08997 * 111.08625 * 336.82517 * 13 11 10 30 30 H 1.09001 * 111.08201 * 100.84455 * 13 11 10 31 31 H 1.08994 * 109.88723 * 305.81515 * 16 14 13 32 32 H 1.09008 * 109.88121 * 66.82717 * 16 14 13 33 33 H 1.08996 * 109.07926 * 178.83681 * 17 16 14 34 34 H 1.09008 * 109.07814 * 297.80008 * 17 16 14 35 35 H 1.08997 * 109.10901 * 65.56600 * 18 17 16 36 36 H 1.08997 * 109.11127 * 184.61700 * 18 17 16 37 37 H 1.09000 * 109.86821 * 176.64861 * 19 18 17 38 38 H 1.08995 * 109.86544 * 297.61818 * 19 18 17 39 39 H 1.09001 * 115.54919 * 148.99561 * 23 9 7 40 40 H 1.08997 * 117.50017 * 359.97438 * 24 23 9 41 41 H 1.09003 * 117.49941 * 145.02244 * 24 23 9 42 42 H 1.09004 * 117.49853 * 214.98309 * 25 23 9 43 43 H 1.08999 * 117.49618 * 0.02562 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0432 -1.2291 -0.3150 9 7 1.3853 -2.3537 0.3975 10 6 0.4634 -2.3310 1.5357 11 6 1.2384 -2.6090 2.8254 12 1 1.7961 -3.5405 2.7287 13 6 0.2533 -2.7051 4.0231 14 6 1.0558 -1.9931 5.1262 15 1 1.7924 -2.6590 5.5759 16 6 0.2132 -1.3041 6.1874 17 6 1.1735 -0.5234 7.0984 18 6 1.9922 0.4925 6.3074 19 6 2.7421 -0.1778 5.1441 20 6 1.7109 -0.8683 4.2786 21 1 0.9413 -0.1461 4.0062 22 8 2.1464 -1.5189 3.1008 23 6 1.6387 -3.6084 -0.3150 24 6 2.6693 -3.5832 -1.4455 25 6 1.1789 -3.6991 -1.7715 26 1 -0.4850 0.8369 0.0730 27 1 -0.3012 -3.0957 1.3993 28 1 -0.0100 -1.3512 1.6004 29 1 -0.6756 -2.1761 3.8103 30 1 0.0582 -3.7443 4.2879 31 1 -0.4897 -0.6181 5.7150 32 1 -0.3300 -2.0482 6.7702 33 1 0.5956 0.0001 7.8600 34 1 1.8508 -1.2245 7.5863 35 1 1.3244 1.2561 5.9087 36 1 2.7149 0.9644 6.9731 37 1 3.2705 0.5762 4.5606 38 1 3.4508 -0.9090 5.5327 39 1 1.5765 -4.5132 0.2896 40 1 3.1585 -2.6330 -1.6595 41 1 3.2855 -4.4715 -1.5848 42 1 0.8146 -4.6637 -2.1251 43 1 0.6883 -2.8250 -2.1997 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687712591.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:48 Heat of formation + Delta-G solvation = -26.596663 kcal Electronic energy + Delta-G solvation = -21639.898680 eV Core-core repulsion = 18685.186255 eV Total energy + Delta-G solvation = -2954.712424 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.28987 -38.70966 -37.19297 -35.16446 -33.61080 -32.54821 -30.58037 -30.02038 -27.08542 -25.25194 -23.23282 -22.97693 -22.35314 -21.91298 -21.44329 -20.79380 -18.22348 -17.48658 -16.96255 -16.72532 -16.36555 -15.86446 -15.62252 -15.47916 -14.71704 -14.61492 -14.22907 -13.91690 -13.74380 -13.46429 -13.11940 -13.02424 -12.80316 -12.72640 -12.63019 -12.37327 -12.14496 -12.05006 -11.78408 -11.73313 -11.65342 -11.45945 -11.38797 -11.26497 -10.85647 -10.74508 -10.44622 -10.16710 -8.43137 -7.72633 -5.42109 1.37196 1.40481 1.50423 2.49973 2.92351 3.20389 3.45155 3.52749 3.66158 3.74170 3.93804 4.10538 4.15418 4.28893 4.32655 4.39965 4.43259 4.47500 4.52607 4.56219 4.60808 4.65348 4.83364 4.87162 4.94387 4.95501 4.98353 5.04310 5.07306 5.14613 5.19665 5.23296 5.26592 5.35383 5.37931 5.40250 5.55639 5.56813 5.70969 5.81104 6.44523 6.55768 7.21982 7.90645 8.40409 9.15808 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.018865 B = 0.007388 C = 0.005982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.878243 B = 3788.848636 C = 4679.226024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.028 4.028 3 Si 0.939 3.061 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.228 4.228 8 H 0.045 0.955 9 N -0.563 5.563 10 C 0.142 3.858 11 C 0.068 3.932 12 H 0.067 0.933 13 C -0.136 4.136 14 C -0.112 4.112 15 H 0.096 0.904 16 C -0.105 4.105 17 C -0.114 4.114 18 C -0.112 4.112 19 C -0.109 4.109 20 C 0.066 3.934 21 H 0.016 0.984 22 O -0.376 6.376 23 C 0.099 3.901 24 C -0.183 4.183 25 C -0.215 4.215 26 H 0.246 0.754 27 H 0.043 0.957 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.132 -5.532 14.083 15.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.224 4.224 3 Si 0.768 3.232 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.359 4.359 8 H 0.062 0.938 9 N -0.280 5.280 10 C 0.016 3.984 11 C 0.009 3.991 12 H 0.085 0.915 13 C -0.174 4.174 14 C -0.131 4.131 15 H 0.114 0.886 16 C -0.142 4.142 17 C -0.151 4.151 18 C -0.149 4.149 19 C -0.147 4.147 20 C 0.008 3.992 21 H 0.034 0.966 22 O -0.296 6.296 23 C -0.009 4.009 24 C -0.221 4.221 25 C -0.256 4.256 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.131 0.869 40 H 0.088 0.912 41 H 0.129 0.871 42 H 0.122 0.878 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.197 -5.314 13.906 14.935 hybrid contribution 0.091 1.313 -0.645 1.465 sum 1.288 -4.001 13.261 13.911 Atomic orbital electron populations 1.70164 1.06354 1.25680 1.53988 1.25590 0.95471 1.00666 1.00702 0.85651 0.79150 0.81754 0.76601 1.19833 1.21900 1.21836 1.18902 0.92259 0.86266 1.38467 0.93766 1.43440 1.50604 1.03552 1.30437 1.21222 0.90894 1.01145 0.85180 1.23895 0.90524 0.88879 0.95777 0.91473 1.22952 0.98017 1.02570 0.93899 1.22666 0.98606 0.96159 0.95648 0.88606 1.21448 0.97375 0.99112 0.96313 1.21528 0.97987 0.97934 0.97635 1.21514 0.99155 0.98191 0.96060 1.21394 0.97618 0.99593 0.96075 1.22374 0.96093 0.95035 0.85696 0.96634 1.88436 1.51721 1.46660 1.42762 1.21565 1.01943 0.90361 0.87017 1.22993 0.92060 1.02071 1.04974 1.23248 0.97153 1.00926 1.04224 0.94488 0.93899 0.92037 0.91576 0.88091 0.92977 0.89485 0.90145 0.90712 0.93210 0.89606 0.93386 0.90368 0.86942 0.91207 0.87075 0.87847 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.40 11.50 21.65 0.25 -55.15 16 2 C -0.03 -1.62 4.98 84.86 0.42 -1.20 16 3 Si 0.94 47.90 29.60 68.60 2.03 49.93 16 4 H -0.27 -13.68 7.11 99.48 0.71 -12.97 16 5 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 6 H -0.29 -14.83 7.11 99.48 0.71 -14.13 16 7 C -0.23 -13.04 8.07 84.03 0.68 -12.36 16 8 H 0.04 2.62 6.75 -2.91 -0.02 2.60 16 9 N -0.56 -28.83 2.74 -678.04 -1.86 -30.69 16 10 C 0.14 6.73 4.94 86.38 0.43 7.15 16 11 C 0.07 2.73 3.76 31.41 0.12 2.85 16 12 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 13 C -0.14 -4.14 6.13 31.71 0.19 -3.94 16 14 C -0.11 -3.08 2.77 -10.02 -0.03 -3.11 16 15 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 16 C -0.11 -2.30 5.58 30.50 0.17 -2.13 16 17 C -0.11 -2.11 5.84 30.68 0.18 -1.93 16 18 C -0.11 -2.54 5.84 30.72 0.18 -2.36 16 19 C -0.11 -3.27 5.99 30.30 0.18 -3.09 16 20 C 0.07 2.41 2.78 30.84 0.09 2.50 16 21 H 0.02 0.66 7.83 -2.39 -0.02 0.64 16 22 O -0.38 -17.03 10.63 -148.58 -1.58 -18.61 16 23 C 0.10 4.29 6.56 44.99 0.30 4.58 16 24 C -0.18 -7.30 9.80 30.60 0.30 -7.00 16 25 C -0.21 -8.86 10.36 30.60 0.32 -8.54 16 26 H 0.25 14.45 8.32 -92.71 -0.77 13.68 16 27 H 0.04 1.90 8.07 -2.39 -0.02 1.88 16 28 H 0.06 3.43 5.59 -2.38 -0.01 3.41 16 29 H 0.07 2.13 7.85 -2.39 -0.02 2.11 16 30 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.05 1.29 7.96 -2.39 -0.02 1.28 16 32 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.11 4.17 8.14 -2.39 -0.02 4.15 16 40 H 0.07 3.18 6.46 -2.39 -0.02 3.16 16 41 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 42 H 0.10 3.51 8.14 -2.38 -0.02 3.49 16 43 H 0.05 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -67.29 331.99 3.32 -63.97 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.95 Total: 19.13 kcal Atomic # 6 Polarization: -32.10 SS G_CDS: 3.52 Total: -28.58 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -1.61 Total: -85.84 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -1.58 Total: -18.61 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.93 kcal Total: -67.29 3.32 -63.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687712591.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.372 kcal (2) G-P(sol) polarization free energy of solvation -67.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds