Wall clock time and date at job start Mon Mar 30 2020 07:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99760 * 2 1 4 4 H 1.48500 * 109.47213 * 275.43937 * 3 2 1 5 5 H 1.48498 * 109.47369 * 35.43852 * 3 2 1 6 6 H 1.48499 * 109.46805 * 155.43852 * 3 2 1 7 7 C 1.38815 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00223 * 337.03379 * 7 2 1 9 9 N 1.36937 * 119.99514 * 157.03295 * 7 2 1 10 10 C 1.46498 * 120.00077 * 321.49339 * 9 7 2 11 11 C 1.52999 * 109.47434 * 270.00331 * 10 9 7 12 12 H 1.08996 * 109.84002 * 305.92941 * 11 10 9 13 13 C 1.54535 * 109.84670 * 185.00213 * 11 10 9 14 14 C 1.56073 * 101.99073 * 218.64907 * 13 11 10 15 15 H 1.08997 * 112.96978 * 156.02731 * 14 13 11 16 16 C 1.53003 * 106.57307 * 280.15883 * 14 13 11 17 17 C 1.52697 * 110.66091 * 162.55246 * 16 14 13 18 18 C 1.53238 * 108.69237 * 298.06167 * 17 16 14 19 19 C 1.52873 * 108.45372 * 63.11387 * 18 17 16 20 20 C 1.51198 * 111.22023 * 300.78926 * 19 18 17 21 21 H 1.08998 * 108.43362 * 173.65632 * 20 19 18 22 22 O 1.42700 * 113.23490 * 293.14968 * 20 19 18 23 23 C 1.46502 * 119.99765 * 141.50228 * 9 7 2 24 24 C 1.53000 * 117.51688 * 345.75664 * 23 9 7 25 25 C 1.52997 * 59.99995 * 107.48353 * 24 23 9 26 26 H 0.96998 * 120.00390 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.46847 * 30.01066 * 10 9 7 28 28 H 1.09002 * 109.46968 * 150.00122 * 10 9 7 29 29 H 1.08997 * 110.92513 * 336.81829 * 13 11 10 30 30 H 1.09005 * 110.92697 * 100.43693 * 13 11 10 31 31 H 1.09001 * 109.24254 * 282.85652 * 16 14 13 32 32 H 1.09007 * 109.24065 * 42.29193 * 16 14 13 33 33 H 1.09002 * 109.59938 * 57.82228 * 17 16 14 34 34 H 1.09000 * 109.60327 * 178.29926 * 17 16 14 35 35 H 1.08998 * 109.64133 * 182.80673 * 18 17 16 36 36 H 1.09004 * 109.64018 * 303.22031 * 18 17 16 37 37 H 1.09001 * 109.12741 * 61.23551 * 19 18 17 38 38 H 1.09001 * 109.12621 * 180.39794 * 19 18 17 39 39 H 1.08994 * 115.55042 * 200.05697 * 23 9 7 40 40 H 1.09004 * 117.49985 * 214.97289 * 24 23 9 41 41 H 1.09000 * 117.50206 * 359.97438 * 24 23 9 42 42 H 1.09004 * 117.49509 * 252.51050 * 25 24 23 43 43 H 1.09002 * 117.51950 * 107.48448 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3827 2.1128 -1.3938 5 1 1.5098 2.6168 0.8118 6 1 3.6005 1.4097 0.5820 7 6 2.0103 -1.2022 -0.0005 8 1 1.5346 -2.1006 0.3640 9 7 3.2983 -1.2489 -0.4633 10 6 3.6861 -0.4544 -1.6315 11 6 3.4706 -1.2779 -2.9028 12 1 3.9942 -2.2302 -2.8199 13 6 3.9937 -0.4964 -4.1291 14 6 2.9203 -0.8339 -5.2106 15 1 2.8615 -0.0844 -5.9999 16 6 3.2631 -2.2254 -5.7465 17 6 2.0671 -2.8310 -6.4775 18 6 0.9114 -2.9866 -5.4833 19 6 0.5037 -1.5969 -4.9938 20 6 1.6614 -0.8907 -4.3253 21 1 1.3567 0.1306 -4.0969 22 8 2.0668 -1.5066 -3.1035 23 6 4.2882 -2.0935 0.2097 24 6 3.9318 -2.6323 1.5965 25 6 3.9475 -3.5740 0.3908 26 1 -0.4850 0.8400 0.0004 27 1 3.0768 0.4483 -1.6755 28 1 4.7378 -0.1792 -1.5508 29 1 4.0190 0.5743 -3.9265 30 1 4.9773 -0.8572 -4.4300 31 1 4.1037 -2.1477 -6.4362 32 1 3.5400 -2.8726 -4.9143 33 1 1.7635 -2.1718 -7.2908 34 1 2.3392 -3.8077 -6.8775 35 1 0.0650 -3.4640 -5.9771 36 1 1.2340 -3.5957 -4.6389 37 1 0.1661 -1.0037 -5.8437 38 1 -0.3140 -1.6954 -4.2798 39 1 5.3307 -1.8362 0.0224 40 1 4.7398 -2.7296 2.3217 41 1 2.9607 -2.3582 2.0087 42 1 2.9865 -3.9195 0.0095 43 1 4.7657 -4.2909 0.3222 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687712592.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:54 Heat of formation + Delta-G solvation = -5.154598 kcal Electronic energy + Delta-G solvation = -21956.949840 eV Core-core repulsion = 19003.167214 eV Total energy + Delta-G solvation = -2953.782627 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.04294 -37.16853 -35.47766 -33.31657 -32.35850 -31.18380 -29.60561 -28.51857 -25.14916 -23.65142 -22.47424 -21.44898 -21.36218 -20.48897 -19.64839 -19.10670 -16.55057 -15.97193 -15.54519 -15.15120 -14.76760 -14.58245 -14.17403 -13.85709 -13.64454 -12.93016 -12.65666 -12.57363 -12.29264 -12.01054 -11.75080 -11.65285 -11.54146 -11.33673 -10.95151 -10.87174 -10.74630 -10.58307 -10.38901 -10.33823 -10.14508 -9.91762 -9.75659 -9.62876 -9.52526 -9.21897 -8.60067 -8.31989 -6.56257 -5.87134 -3.26701 3.33736 3.50159 3.55654 4.37334 4.61132 4.70644 4.86858 4.90768 4.92648 5.11503 5.30836 5.36270 5.40680 5.46848 5.56724 5.63416 5.74860 5.77934 5.83201 5.84476 5.97484 6.00266 6.03128 6.06739 6.10336 6.16624 6.19405 6.34228 6.37352 6.43156 6.45594 6.49022 6.53996 6.57027 6.60652 6.71156 6.89664 7.00427 7.20414 7.95577 8.17891 8.52424 9.09001 9.83649 10.20968 11.28569 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.018551 B = 0.007948 C = 0.006979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.957533 B = 3522.042143 C = 4011.278076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.045 3.955 3 Si 0.867 3.133 4 H -0.289 1.289 5 H -0.302 1.302 6 H -0.270 1.270 7 C -0.248 4.248 8 H 0.077 0.923 9 N -0.565 5.565 10 C 0.128 3.872 11 C 0.070 3.930 12 H 0.069 0.931 13 C -0.154 4.154 14 C -0.119 4.119 15 H 0.087 0.913 16 C -0.109 4.109 17 C -0.117 4.117 18 C -0.116 4.116 19 C -0.111 4.111 20 C 0.086 3.914 21 H 0.046 0.954 22 O -0.325 6.325 23 C 0.121 3.879 24 C -0.195 4.195 25 C -0.220 4.220 26 H 0.260 0.740 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.089 0.911 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.381 -2.929 -11.366 13.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.155 4.155 3 Si 0.698 3.302 4 H -0.217 1.217 5 H -0.230 1.230 6 H -0.195 1.195 7 C -0.377 4.377 8 H 0.094 0.906 9 N -0.283 5.283 10 C 0.003 3.997 11 C 0.010 3.990 12 H 0.087 0.913 13 C -0.193 4.193 14 C -0.138 4.138 15 H 0.106 0.894 16 C -0.147 4.147 17 C -0.155 4.155 18 C -0.153 4.153 19 C -0.148 4.148 20 C 0.027 3.973 21 H 0.064 0.936 22 O -0.243 6.243 23 C 0.012 3.988 24 C -0.234 4.234 25 C -0.260 4.260 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.121 0.879 42 H 0.108 0.892 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.067 -2.905 -11.194 13.553 hybrid contribution 0.554 1.166 -0.105 1.295 sum 7.620 -1.740 -11.300 13.740 Atomic orbital electron populations 1.69892 1.05862 1.26215 1.51594 1.25327 0.94863 0.97209 0.98088 0.87068 0.80937 0.85515 0.76686 1.21683 1.23049 1.19503 1.18485 0.86121 0.94122 1.38925 0.90590 1.43587 1.07338 1.50267 1.27089 1.21629 0.97342 0.94414 0.86355 1.23500 0.82970 0.98130 0.94443 0.91319 1.23476 0.98938 1.01169 0.95693 1.22852 0.95833 0.97570 0.97513 0.89434 1.21488 0.97415 0.95883 0.99894 1.21518 0.95967 1.00063 0.97923 1.21502 0.97460 0.97400 0.98979 1.21134 0.97982 0.96153 0.99557 1.21936 0.93490 0.96400 0.85456 0.93614 1.88701 1.22568 1.75964 1.37104 1.21080 0.91983 0.90479 0.95217 1.23113 1.03151 1.05554 0.91554 1.23327 1.02354 0.95585 1.04776 0.93051 0.92193 0.93534 0.91179 0.90766 0.92621 0.91350 0.92405 0.92390 0.92467 0.91075 0.91644 0.90814 0.89363 0.90737 0.87900 0.89235 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.58 13.97 55.49 0.78 -26.81 16 2 C 0.05 1.32 5.29 -17.43 -0.09 1.23 16 3 Si 0.87 22.45 25.14 -169.99 -4.27 18.18 16 4 H -0.29 -7.26 6.67 56.52 0.38 -6.88 16 5 H -0.30 -7.97 7.11 56.52 0.40 -7.56 16 6 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.25 -6.96 8.06 -15.06 -0.12 -7.08 16 8 H 0.08 2.35 7.39 -52.49 -0.39 1.96 16 9 N -0.57 -13.56 2.41 -165.67 -0.40 -13.96 16 10 C 0.13 2.79 4.13 -4.04 -0.02 2.78 16 11 C 0.07 1.34 3.00 -25.93 -0.08 1.26 16 12 H 0.07 1.31 7.86 -51.93 -0.41 0.90 16 13 C -0.15 -2.35 5.90 -24.28 -0.14 -2.49 16 14 C -0.12 -1.71 3.73 -88.45 -0.33 -2.04 16 15 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 16 C -0.11 -1.41 4.91 -26.89 -0.13 -1.54 16 17 C -0.12 -1.40 5.92 -26.76 -0.16 -1.56 16 18 C -0.12 -1.62 5.93 -26.67 -0.16 -1.78 16 19 C -0.11 -1.75 5.63 -27.70 -0.16 -1.90 16 20 C 0.09 1.54 3.06 -27.11 -0.08 1.46 16 21 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 22 O -0.32 -7.14 10.29 -35.23 -0.36 -7.50 16 23 C 0.12 2.51 6.62 -67.93 -0.45 2.06 16 24 C -0.19 -3.87 9.81 -26.73 -0.26 -4.13 16 25 C -0.22 -4.24 10.08 -26.73 -0.27 -4.51 16 26 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.06 1.45 3.44 -51.93 -0.18 1.27 16 28 H 0.05 0.89 8.04 -51.93 -0.42 0.47 16 29 H 0.07 1.07 7.86 -51.93 -0.41 0.66 16 30 H 0.07 0.95 7.96 -51.93 -0.41 0.54 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.99 6.97 -51.93 -0.36 0.63 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.09 1.60 8.10 -51.93 -0.42 1.18 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.10 2.32 6.98 -51.93 -0.36 1.95 16 42 H 0.09 1.94 7.98 -51.93 -0.41 1.52 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 325.22 15.07 4.90 4.90 Total: -1.00 -30.84 325.22 -9.39 -40.24 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -7.58 Total: 3.20 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -2.45 Total: -18.25 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.38 Total: -40.77 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.36 Total: -7.50 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.27 Total: 18.18 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.84 -9.39 -40.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687712592.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.080 kcal (2) G-P(sol) polarization free energy of solvation -30.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds