Wall clock time and date at job start Mon Mar 30 2020 07:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99760 * 2 1 4 4 H 1.48500 * 109.47213 * 275.43937 * 3 2 1 5 5 H 1.48498 * 109.47369 * 35.43852 * 3 2 1 6 6 H 1.48499 * 109.46805 * 155.43852 * 3 2 1 7 7 C 1.38815 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00223 * 337.03379 * 7 2 1 9 9 N 1.36937 * 119.99514 * 157.03295 * 7 2 1 10 10 C 1.46498 * 120.00077 * 321.49339 * 9 7 2 11 11 C 1.52999 * 109.47434 * 270.00331 * 10 9 7 12 12 H 1.08996 * 109.84002 * 305.92941 * 11 10 9 13 13 C 1.54535 * 109.84670 * 185.00213 * 11 10 9 14 14 C 1.56073 * 101.99073 * 218.64907 * 13 11 10 15 15 H 1.08997 * 112.96978 * 156.02731 * 14 13 11 16 16 C 1.53003 * 106.57307 * 280.15883 * 14 13 11 17 17 C 1.52697 * 110.66091 * 162.55246 * 16 14 13 18 18 C 1.53238 * 108.69237 * 298.06167 * 17 16 14 19 19 C 1.52873 * 108.45372 * 63.11387 * 18 17 16 20 20 C 1.51198 * 111.22023 * 300.78926 * 19 18 17 21 21 H 1.08998 * 108.43362 * 173.65632 * 20 19 18 22 22 O 1.42700 * 113.23490 * 293.14968 * 20 19 18 23 23 C 1.46502 * 119.99765 * 141.50228 * 9 7 2 24 24 C 1.53000 * 117.51688 * 345.75664 * 23 9 7 25 25 C 1.52997 * 59.99995 * 107.48353 * 24 23 9 26 26 H 0.96998 * 120.00390 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.46847 * 30.01066 * 10 9 7 28 28 H 1.09002 * 109.46968 * 150.00122 * 10 9 7 29 29 H 1.08997 * 110.92513 * 336.81829 * 13 11 10 30 30 H 1.09005 * 110.92697 * 100.43693 * 13 11 10 31 31 H 1.09001 * 109.24254 * 282.85652 * 16 14 13 32 32 H 1.09007 * 109.24065 * 42.29193 * 16 14 13 33 33 H 1.09002 * 109.59938 * 57.82228 * 17 16 14 34 34 H 1.09000 * 109.60327 * 178.29926 * 17 16 14 35 35 H 1.08998 * 109.64133 * 182.80673 * 18 17 16 36 36 H 1.09004 * 109.64018 * 303.22031 * 18 17 16 37 37 H 1.09001 * 109.12741 * 61.23551 * 19 18 17 38 38 H 1.09001 * 109.12621 * 180.39794 * 19 18 17 39 39 H 1.08994 * 115.55042 * 200.05697 * 23 9 7 40 40 H 1.09004 * 117.49985 * 214.97289 * 24 23 9 41 41 H 1.09000 * 117.50206 * 359.97438 * 24 23 9 42 42 H 1.09004 * 117.49509 * 252.51050 * 25 24 23 43 43 H 1.09002 * 117.51950 * 107.48448 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3827 2.1128 -1.3938 5 1 1.5098 2.6168 0.8118 6 1 3.6005 1.4097 0.5820 7 6 2.0103 -1.2022 -0.0005 8 1 1.5346 -2.1006 0.3640 9 7 3.2983 -1.2489 -0.4633 10 6 3.6861 -0.4544 -1.6315 11 6 3.4706 -1.2779 -2.9028 12 1 3.9942 -2.2302 -2.8199 13 6 3.9937 -0.4964 -4.1291 14 6 2.9203 -0.8339 -5.2106 15 1 2.8615 -0.0844 -5.9999 16 6 3.2631 -2.2254 -5.7465 17 6 2.0671 -2.8310 -6.4775 18 6 0.9114 -2.9866 -5.4833 19 6 0.5037 -1.5969 -4.9938 20 6 1.6614 -0.8907 -4.3253 21 1 1.3567 0.1306 -4.0969 22 8 2.0668 -1.5066 -3.1035 23 6 4.2882 -2.0935 0.2097 24 6 3.9318 -2.6323 1.5965 25 6 3.9475 -3.5740 0.3908 26 1 -0.4850 0.8400 0.0004 27 1 3.0768 0.4483 -1.6755 28 1 4.7378 -0.1792 -1.5508 29 1 4.0190 0.5743 -3.9265 30 1 4.9773 -0.8572 -4.4300 31 1 4.1037 -2.1477 -6.4362 32 1 3.5400 -2.8726 -4.9143 33 1 1.7635 -2.1718 -7.2908 34 1 2.3392 -3.8077 -6.8775 35 1 0.0650 -3.4640 -5.9771 36 1 1.2340 -3.5957 -4.6389 37 1 0.1661 -1.0037 -5.8437 38 1 -0.3140 -1.6954 -4.2798 39 1 5.3307 -1.8362 0.0224 40 1 4.7398 -2.7296 2.3217 41 1 2.9607 -2.3582 2.0087 42 1 2.9865 -3.9195 0.0095 43 1 4.7657 -4.2909 0.3222 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687712592.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:53 Heat of formation + Delta-G solvation = -23.731772 kcal Electronic energy + Delta-G solvation = -21957.755407 eV Core-core repulsion = 19003.167214 eV Total energy + Delta-G solvation = -2954.588193 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.38575 -38.87509 -36.79484 -35.13369 -33.83414 -33.05676 -30.84404 -30.07027 -26.87558 -25.42561 -23.68324 -22.97567 -22.69704 -21.86838 -21.49371 -20.33923 -18.49751 -17.58866 -17.08853 -16.89386 -16.31301 -15.98063 -15.56874 -15.26474 -15.05787 -14.64614 -14.17013 -14.14793 -14.02158 -13.51026 -13.31199 -12.92353 -12.79579 -12.70003 -12.65092 -12.38888 -12.27109 -12.19473 -11.99678 -11.79262 -11.61396 -11.48806 -11.43227 -11.01072 -10.91123 -10.86376 -10.52113 -10.11938 -8.50215 -8.12574 -5.48268 1.25471 1.36846 1.47963 2.44514 2.94423 3.08149 3.29406 3.43240 3.55169 3.72728 3.94034 4.07914 4.15788 4.25294 4.27652 4.32931 4.38450 4.41272 4.49452 4.51902 4.57950 4.60512 4.69699 4.73572 4.83720 4.91380 4.94128 4.95714 5.01006 5.05576 5.11194 5.25905 5.30803 5.32719 5.34890 5.39191 5.41175 5.55425 5.59914 5.99160 6.23987 6.54201 7.06411 7.71200 8.09451 9.07826 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.018551 B = 0.007948 C = 0.006979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.957533 B = 3522.042143 C = 4011.278076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.014 4.014 3 Si 0.936 3.064 4 H -0.279 1.279 5 H -0.312 1.312 6 H -0.255 1.255 7 C -0.225 4.225 8 H 0.027 0.973 9 N -0.580 5.580 10 C 0.120 3.880 11 C 0.068 3.932 12 H 0.069 0.931 13 C -0.145 4.145 14 C -0.106 4.106 15 H 0.115 0.885 16 C -0.107 4.107 17 C -0.111 4.111 18 C -0.113 4.113 19 C -0.110 4.110 20 C 0.075 3.925 21 H 0.015 0.985 22 O -0.372 6.372 23 C 0.107 3.893 24 C -0.195 4.195 25 C -0.206 4.206 26 H 0.257 0.743 27 H 0.033 0.967 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.093 0.907 38 H 0.035 0.965 39 H 0.130 0.870 40 H 0.113 0.887 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.084 -2.746 -13.761 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.209 4.209 3 Si 0.765 3.235 4 H -0.206 1.206 5 H -0.240 1.240 6 H -0.179 1.179 7 C -0.355 4.355 8 H 0.044 0.956 9 N -0.299 5.299 10 C -0.004 4.004 11 C 0.008 3.992 12 H 0.087 0.913 13 C -0.183 4.183 14 C -0.124 4.124 15 H 0.133 0.867 16 C -0.144 4.144 17 C -0.148 4.148 18 C -0.150 4.150 19 C -0.148 4.148 20 C 0.016 3.984 21 H 0.033 0.967 22 O -0.291 6.291 23 C -0.001 4.001 24 C -0.234 4.234 25 C -0.247 4.247 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.126 0.874 31 H 0.106 0.894 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.058 0.942 37 H 0.111 0.889 38 H 0.054 0.946 39 H 0.147 0.853 40 H 0.131 0.869 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.820 -2.737 -13.600 17.593 hybrid contribution -0.643 0.968 0.677 1.346 sum 10.177 -1.769 -12.923 16.544 Atomic orbital electron populations 1.70040 1.07695 1.26730 1.54785 1.25904 0.95407 1.00667 0.98961 0.85959 0.79776 0.80863 0.76911 1.20634 1.24047 1.17938 1.18175 0.87934 0.92209 1.37155 0.95559 1.43682 1.06494 1.51165 1.28538 1.21797 0.98590 0.93435 0.86614 1.23462 0.82166 0.98328 0.95246 0.91286 1.23455 1.00567 1.00542 0.93774 1.22851 0.92795 0.99498 0.97278 0.86695 1.21490 0.98832 0.94244 0.99852 1.21507 0.94345 1.01556 0.97430 1.21469 0.99319 0.95498 0.98744 1.21160 0.96215 0.97973 0.99450 1.22153 0.96080 0.94640 0.85480 0.96715 1.88662 1.24486 1.76470 1.39480 1.21484 0.92927 0.90351 0.95327 1.23103 1.02450 1.05614 0.92191 1.23248 1.01833 0.95761 1.03826 0.93419 0.94888 0.90035 0.91230 0.87361 0.89446 0.93418 0.90352 0.90585 0.90800 0.94176 0.88869 0.94576 0.85269 0.86875 0.91859 0.92944 0.86926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.17 13.97 21.65 0.30 -61.86 16 2 C -0.01 -0.84 5.29 84.86 0.45 -0.39 16 3 Si 0.94 47.91 25.14 68.60 1.72 49.63 16 4 H -0.28 -13.66 6.67 99.48 0.66 -13.00 16 5 H -0.31 -16.23 7.11 99.48 0.71 -15.52 16 6 H -0.26 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.22 -13.25 8.06 84.03 0.68 -12.57 16 8 H 0.03 1.79 7.39 -2.91 -0.02 1.77 16 9 N -0.58 -27.90 2.41 -678.05 -1.63 -29.53 16 10 C 0.12 5.09 4.13 86.38 0.36 5.44 16 11 C 0.07 2.54 3.00 31.12 0.09 2.63 16 12 H 0.07 2.55 7.86 -2.39 -0.02 2.53 16 13 C -0.15 -3.97 5.90 32.18 0.19 -3.78 16 14 C -0.11 -2.74 3.73 -9.39 -0.04 -2.77 16 15 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 16 C -0.11 -2.37 4.91 30.49 0.15 -2.22 16 17 C -0.11 -2.28 5.92 30.57 0.18 -2.10 16 18 C -0.11 -3.08 5.93 30.63 0.18 -2.90 16 19 C -0.11 -3.56 5.63 29.96 0.17 -3.39 16 20 C 0.07 2.71 3.06 30.35 0.09 2.81 16 21 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 22 O -0.37 -16.95 10.29 -148.98 -1.53 -18.48 16 23 C 0.11 4.22 6.62 44.99 0.30 4.51 16 24 C -0.19 -7.57 9.81 30.59 0.30 -7.27 16 25 C -0.21 -7.76 10.08 30.59 0.31 -7.45 16 26 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 27 H 0.03 1.58 3.44 -2.39 -0.01 1.57 16 28 H 0.08 2.83 8.04 -2.39 -0.02 2.81 16 29 H 0.07 1.92 7.86 -2.39 -0.02 1.90 16 30 H 0.11 2.24 7.96 -2.38 -0.02 2.22 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.05 1.27 6.97 -2.38 -0.02 1.25 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 39 H 0.13 4.10 8.10 -2.39 -0.02 4.08 16 40 H 0.11 3.50 8.14 -2.38 -0.02 3.49 16 41 H 0.06 2.97 6.98 -2.39 -0.02 2.95 16 42 H 0.05 2.36 7.98 -2.39 -0.02 2.34 16 43 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -73.65 325.22 3.19 -70.46 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.92 Total: 19.22 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: 3.41 Total: -29.44 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -1.33 Total: -91.40 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -1.53 Total: -18.48 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 1.72 Total: 49.63 kcal Total: -73.65 3.19 -70.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687712592.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.733 kcal (2) G-P(sol) polarization free energy of solvation -73.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds