Wall clock time and date at job start Mon Mar 30 2020 07:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48506 * 109.46818 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46852 * 299.99775 * 3 2 1 6 6 H 1.48495 * 109.47149 * 59.99960 * 3 2 1 7 7 C 1.38811 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99991 * 158.97700 * 7 2 1 9 9 N 1.36938 * 120.00455 * 338.98307 * 7 2 1 10 10 C 1.46498 * 119.99933 * 324.24622 * 9 7 2 11 11 C 1.52999 * 109.46924 * 269.99752 * 10 9 7 12 12 H 1.08998 * 109.86552 * 305.45006 * 11 10 9 13 13 C 1.54230 * 109.99553 * 184.37146 * 11 10 9 14 14 C 1.55673 * 103.94515 * 240.06136 * 13 11 10 15 15 H 1.08996 * 112.62640 * 217.05115 * 14 13 11 16 16 C 1.53019 * 106.60196 * 92.79042 * 14 13 11 17 17 C 1.52655 * 110.77153 * 196.66320 * 16 14 13 18 18 C 1.53258 * 108.61810 * 62.06653 * 17 16 14 19 19 C 1.50948 * 107.88821 * 296.69468 * 18 17 16 20 20 C 1.51073 * 112.43655 * 59.68032 * 19 18 17 21 21 H 1.09001 * 109.00896 * 185.67415 * 20 19 18 22 22 O 1.43393 * 113.05544 * 64.35736 * 20 19 18 23 23 C 1.46495 * 120.00131 * 144.23932 * 9 7 2 24 24 C 1.53000 * 117.49856 * 3.24126 * 23 9 7 25 25 C 1.53006 * 117.50517 * 294.58059 * 23 9 7 26 26 H 0.97002 * 120.00268 * 355.61740 * 1 2 3 27 27 H 1.09003 * 109.46989 * 149.99510 * 10 9 7 28 28 H 1.09006 * 109.47176 * 30.00027 * 10 9 7 29 29 H 1.08993 * 110.53263 * 358.67869 * 13 11 10 30 30 H 1.09002 * 110.53236 * 121.44935 * 13 11 10 31 31 H 1.08992 * 109.21926 * 316.99649 * 16 14 13 32 32 H 1.09000 * 109.21246 * 76.37674 * 16 14 13 33 33 H 1.09004 * 109.61226 * 181.81037 * 17 16 14 34 34 H 1.09001 * 109.61436 * 302.32545 * 17 16 14 35 35 H 1.08997 * 109.69006 * 56.34528 * 18 17 16 36 36 H 1.09006 * 109.69113 * 176.87517 * 18 17 16 37 37 H 1.09000 * 109.27464 * 298.38384 * 19 18 17 38 38 H 1.08998 * 107.83612 * 179.97438 * 19 18 17 39 39 H 1.08998 * 115.55033 * 148.90607 * 23 9 7 40 40 H 1.08997 * 117.50345 * 359.97438 * 24 23 9 41 41 H 1.09007 * 117.49941 * 145.01827 * 24 23 9 42 42 H 1.08997 * 117.50079 * 214.98001 * 25 23 9 43 43 H 1.09002 * 117.49372 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8913 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0363 -1.2334 -0.3350 9 7 1.3939 -2.3485 0.4264 10 6 0.4325 -2.2965 1.5305 11 6 1.1671 -2.5035 2.8565 12 1 1.7421 -3.4287 2.8209 13 6 0.1536 -2.5603 4.0176 14 6 0.5700 -1.3755 4.9375 15 1 0.4566 -1.6069 5.9965 16 6 -0.2637 -0.1690 4.5007 17 6 0.3369 1.1274 5.0385 18 6 1.7411 1.2976 4.4488 19 6 2.5928 0.1528 4.9414 20 6 2.0440 -1.1930 4.5293 21 1 2.6400 -1.9774 4.9958 22 8 2.0462 -1.3894 3.1088 23 6 1.6959 -3.6268 -0.2223 24 6 2.7639 -3.6281 -1.3179 25 6 1.2873 -3.7895 -1.6878 26 1 -0.4850 0.8376 0.0642 27 1 -0.3122 -3.0819 1.4011 28 1 -0.0616 -1.3248 1.5366 29 1 -0.8613 -2.4179 3.6465 30 1 0.2370 -3.5067 4.5519 31 1 -0.2912 -0.1270 3.4120 32 1 -1.2793 -0.2781 4.8813 33 1 -0.2885 1.9702 4.7438 34 1 0.4000 1.0780 6.1256 35 1 1.6873 1.2775 3.3603 36 1 2.1652 2.2463 4.7779 37 1 2.6570 0.1941 6.0287 38 1 3.5911 0.2744 4.5211 39 1 1.6315 -4.5060 0.4187 40 1 3.2415 -2.6779 -1.5565 41 1 3.4017 -4.5085 -1.3980 42 1 0.9543 -4.7758 -2.0109 43 1 0.7933 -2.9455 -2.1691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687712593.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:57 Heat of formation + Delta-G solvation = -25.864387 kcal Electronic energy + Delta-G solvation = -22170.299331 eV Core-core repulsion = 19215.618660 eV Total energy + Delta-G solvation = -2954.680671 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.27012 -38.68282 -36.82236 -35.17272 -33.69771 -32.50808 -30.74477 -29.92610 -27.00005 -25.20183 -23.39541 -23.07426 -22.69832 -21.72925 -21.38395 -20.19119 -18.32102 -17.30190 -17.23169 -16.52182 -16.30909 -15.99272 -15.55930 -15.18966 -15.06451 -14.40965 -14.20276 -13.90820 -13.63975 -13.42749 -13.07803 -12.86287 -12.73827 -12.62619 -12.55191 -12.46013 -12.26199 -12.07856 -11.98494 -11.68178 -11.49228 -11.44860 -11.32881 -10.91333 -10.85899 -10.84824 -10.38642 -10.14883 -8.44550 -7.70667 -5.34217 1.39214 1.43422 1.51304 2.53328 3.14098 3.22005 3.47511 3.54728 3.70845 3.77181 4.02522 4.16406 4.19040 4.29529 4.30481 4.44212 4.45354 4.51978 4.56425 4.58032 4.65745 4.73203 4.82461 4.90403 4.93202 4.96425 4.98446 5.03382 5.06403 5.14733 5.23909 5.31150 5.36765 5.37738 5.40705 5.43671 5.54902 5.64832 5.73719 5.92725 6.43187 6.58929 7.24339 7.94508 8.41876 9.19518 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.017795 B = 0.009180 C = 0.007178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.133092 B = 3049.260016 C = 3899.939899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.020 4.020 3 Si 0.933 3.067 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.285 1.285 7 C -0.229 4.229 8 H 0.045 0.955 9 N -0.564 5.564 10 C 0.146 3.854 11 C 0.067 3.933 12 H 0.045 0.955 13 C -0.143 4.143 14 C -0.102 4.102 15 H 0.120 0.880 16 C -0.110 4.110 17 C -0.110 4.110 18 C -0.122 4.122 19 C -0.103 4.103 20 C 0.065 3.935 21 H 0.059 0.941 22 O -0.367 6.367 23 C 0.099 3.901 24 C -0.184 4.184 25 C -0.215 4.215 26 H 0.245 0.755 27 H 0.038 0.962 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.024 0.976 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.049 0.951 39 H 0.111 0.889 40 H 0.070 0.930 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.660 -4.120 12.724 13.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.216 4.216 3 Si 0.763 3.237 4 H -0.203 1.203 5 H -0.225 1.225 6 H -0.212 1.212 7 C -0.359 4.359 8 H 0.062 0.938 9 N -0.280 5.280 10 C 0.020 3.980 11 C 0.007 3.993 12 H 0.062 0.938 13 C -0.181 4.181 14 C -0.121 4.121 15 H 0.138 0.862 16 C -0.148 4.148 17 C -0.147 4.147 18 C -0.160 4.160 19 C -0.140 4.140 20 C 0.007 3.993 21 H 0.077 0.923 22 O -0.286 6.286 23 C -0.009 4.009 24 C -0.222 4.222 25 C -0.256 4.256 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.042 0.958 36 H 0.090 0.910 37 H 0.123 0.877 38 H 0.068 0.932 39 H 0.128 0.872 40 H 0.088 0.912 41 H 0.129 0.871 42 H 0.121 0.879 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.676 -3.856 12.507 13.105 hybrid contribution 0.295 1.000 -0.643 1.225 sum 0.971 -2.856 11.864 12.241 Atomic orbital electron populations 1.70112 1.06208 1.25449 1.53992 1.25352 0.95298 1.00104 1.00882 0.85762 0.78998 0.82326 0.76602 1.20307 1.22496 1.21163 1.18889 0.92817 0.86536 1.37679 0.93779 1.43499 1.48361 1.02113 1.34053 1.21184 0.90402 1.01998 0.84422 1.23445 0.90713 0.88511 0.96655 0.93751 1.23242 0.99502 0.99640 0.95708 1.22709 0.94423 0.94616 1.00331 0.86223 1.21464 0.98921 0.94587 0.99790 1.21489 0.95271 0.96910 1.01069 1.21203 0.97002 0.98498 0.99269 1.20724 0.98717 0.92697 1.01893 1.22417 0.96077 0.97439 0.83318 0.92332 1.89095 1.66206 1.51589 1.21743 1.21540 1.01653 0.90010 0.87696 1.23010 0.91858 1.02047 1.05305 1.23271 0.97677 1.00913 1.03718 0.94514 0.94340 0.90366 0.91104 0.89136 0.95042 0.90973 0.92782 0.89247 0.95755 0.91011 0.87718 0.93221 0.87189 0.91153 0.87149 0.87861 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.26 11.31 21.65 0.24 -54.01 16 2 C -0.02 -1.13 4.98 84.86 0.42 -0.71 16 3 Si 0.93 47.70 29.61 68.60 2.03 49.73 16 4 H -0.28 -14.04 7.11 99.48 0.71 -13.34 16 5 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 6 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 7 C -0.23 -12.96 8.19 84.03 0.69 -12.27 16 8 H 0.04 2.60 6.57 -2.91 -0.02 2.58 16 9 N -0.56 -28.66 2.76 -678.03 -1.87 -30.54 16 10 C 0.15 6.88 4.84 86.38 0.42 7.30 16 11 C 0.07 2.63 3.54 31.01 0.11 2.74 16 12 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 13 C -0.14 -4.29 5.97 31.93 0.19 -4.10 16 14 C -0.10 -2.82 3.64 -9.52 -0.03 -2.86 16 15 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 16 C -0.11 -3.41 4.76 30.49 0.15 -3.26 16 17 C -0.11 -3.06 5.91 30.57 0.18 -2.88 16 18 C -0.12 -3.98 5.90 30.01 0.18 -3.80 16 19 C -0.10 -3.02 5.43 29.30 0.16 -2.86 16 20 C 0.07 2.11 3.08 30.32 0.09 2.20 16 21 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 22 O -0.37 -16.03 10.25 -148.98 -1.53 -17.55 16 23 C 0.10 4.28 6.56 44.99 0.30 4.58 16 24 C -0.18 -7.34 9.80 30.62 0.30 -7.04 16 25 C -0.21 -8.81 10.36 30.62 0.32 -8.49 16 26 H 0.25 14.27 8.32 -92.71 -0.77 13.50 16 27 H 0.04 1.71 8.07 -2.39 -0.02 1.69 16 28 H 0.08 4.28 4.75 -2.38 -0.01 4.27 16 29 H 0.07 2.21 7.32 -2.39 -0.02 2.19 16 30 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.03 1.30 7.14 -2.39 -0.02 1.28 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.05 1.51 8.14 -2.38 -0.02 1.50 16 34 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.02 1.04 8.10 -2.39 -0.02 1.02 16 36 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 40 H 0.07 3.19 6.38 -2.39 -0.02 3.18 16 41 H 0.11 3.55 8.14 -2.38 -0.02 3.54 16 42 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 43 H 0.05 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -66.18 328.85 3.30 -62.88 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.96 Total: 20.94 kcal Atomic # 6 Polarization: -34.91 SS G_CDS: 3.46 Total: -31.45 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -1.63 Total: -84.55 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -1.53 Total: -17.55 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -66.18 3.30 -62.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687712593.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.015 kcal (2) G-P(sol) polarization free energy of solvation -66.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds