Wall clock time and date at job start Mon Mar 30 2020 07:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00285 * 2 1 4 4 H 1.48493 * 109.47190 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47118 * 119.99990 * 3 2 1 6 6 H 1.48501 * 109.47034 * 239.99647 * 3 2 1 7 7 C 1.38816 * 119.99271 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99343 * 201.75713 * 7 2 1 9 9 N 1.36929 * 120.00383 * 21.75739 * 7 2 1 10 10 C 1.46500 * 120.00183 * 35.17832 * 9 7 2 11 11 C 1.52999 * 109.46959 * 90.00112 * 10 9 7 12 12 H 1.09003 * 109.90135 * 306.09345 * 11 10 9 13 13 C 1.55079 * 109.91023 * 185.00494 * 11 10 9 14 14 C 1.53242 * 103.07308 * 242.29389 * 13 11 10 15 15 H 1.09009 * 110.83587 * 90.93371 * 14 13 11 16 16 C 1.51852 * 115.63143 * 218.66565 * 14 13 11 17 17 C 1.54317 * 106.98031 * 176.08248 * 16 14 13 18 18 C 1.52578 * 111.42702 * 301.84068 * 17 16 14 19 19 C 1.53763 * 111.39930 * 54.86971 * 18 17 16 20 20 C 1.51485 * 107.34606 * 302.55450 * 19 18 17 21 21 H 1.08998 * 109.67862 * 305.44242 * 20 19 18 22 22 O 1.42303 * 117.36317 * 179.43715 * 20 19 18 23 23 C 1.46505 * 119.99972 * 215.18186 * 9 7 2 24 24 C 1.52994 * 117.49722 * 10.48095 * 23 9 7 25 25 C 1.53003 * 117.49664 * 301.82148 * 23 9 7 26 26 H 0.96997 * 119.99146 * 358.08758 * 1 2 3 27 27 H 1.08994 * 109.47350 * 210.00021 * 10 9 7 28 28 H 1.09005 * 109.46831 * 330.00015 * 10 9 7 29 29 H 1.08995 * 110.69826 * 0.68992 * 13 11 10 30 30 H 1.08995 * 110.69888 * 123.90284 * 13 11 10 31 31 H 1.09000 * 109.89663 * 295.29953 * 16 14 13 32 32 H 1.09000 * 109.89035 * 56.40785 * 16 14 13 33 33 H 1.08996 * 109.00574 * 181.40939 * 17 16 14 34 34 H 1.08995 * 109.20970 * 62.40272 * 17 16 14 35 35 H 1.08998 * 109.09231 * 294.37408 * 18 17 16 36 36 H 1.09002 * 109.04435 * 175.32765 * 18 17 16 37 37 H 1.09002 * 109.88341 * 183.09650 * 19 18 17 38 38 H 1.08995 * 109.94168 * 62.04512 * 19 18 17 39 39 H 1.08997 * 115.54918 * 156.15857 * 23 9 7 40 40 H 1.08995 * 117.50178 * 0.02562 * 24 23 9 41 41 H 1.09007 * 117.49403 * 145.02296 * 24 23 9 42 42 H 1.08999 * 117.50007 * 214.98135 * 25 23 9 43 43 H 1.09003 * 117.49773 * 0.02562 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1041 1.6962 -1.2125 7 6 2.0101 -1.2023 -0.0005 8 1 3.0324 -1.2357 0.3462 9 7 1.3986 -2.3456 -0.4406 10 6 0.4400 -2.2845 -1.5468 11 6 1.1790 -2.4747 -2.8730 12 1 1.9945 -1.7556 -2.9498 13 6 0.1955 -2.2865 -4.0572 14 6 0.2103 -3.6576 -4.7413 15 1 -0.5680 -4.3028 -4.3335 16 6 0.1659 -3.6350 -6.2590 17 6 0.2899 -5.0976 -6.7353 18 6 1.5768 -5.7417 -6.2284 19 6 1.6916 -5.6373 -4.6987 20 6 1.6226 -4.1672 -4.3398 21 1 2.3825 -3.6177 -4.8954 22 8 1.6973 -3.8264 -2.9602 23 6 1.7028 -3.6302 0.1949 24 6 2.5141 -3.6022 1.4917 25 6 3.1618 -4.0909 0.1937 26 1 -0.4849 0.8396 0.0280 27 1 -0.3025 -3.0735 -1.4282 28 1 -0.0570 -1.3143 -1.5436 29 1 -0.8040 -2.0481 -3.6937 30 1 0.5541 -1.5133 -4.7366 31 1 -0.7817 -3.2150 -6.5962 32 1 0.9942 -3.0412 -6.6454 33 1 0.2868 -5.1174 -7.8251 34 1 -0.5629 -5.6681 -6.3674 35 1 2.4302 -5.2405 -6.6851 36 1 1.5853 -6.7932 -6.5157 37 1 2.6429 -6.0550 -4.3689 38 1 0.8682 -6.1731 -4.2266 39 1 0.9331 -4.3960 0.0990 40 1 2.8211 -2.6281 1.8723 41 1 2.2783 -4.3499 2.2490 42 1 3.3520 -5.1599 0.0976 43 1 3.8954 -3.4381 -0.2794 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687712594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:03 Heat of formation + Delta-G solvation = -12.666466 kcal Electronic energy + Delta-G solvation = -21462.599105 eV Core-core repulsion = 18508.490739 eV Total energy + Delta-G solvation = -2954.108366 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.98964 -36.98785 -35.89106 -33.44910 -32.21986 -30.72584 -29.46090 -28.48163 -25.32414 -23.55930 -21.96221 -21.26188 -21.17261 -20.42131 -19.89870 -19.58535 -16.44189 -15.57665 -15.47358 -15.04560 -14.85351 -14.58565 -14.26643 -13.88098 -13.63704 -13.20497 -12.71296 -12.59129 -12.33683 -11.82399 -11.79793 -11.53639 -11.26818 -11.07279 -10.85388 -10.77285 -10.73299 -10.54314 -10.47702 -10.30130 -10.21233 -10.00205 -9.94305 -9.66337 -9.43738 -9.08154 -8.83614 -8.38248 -6.45099 -5.78208 -3.32308 3.36349 3.41975 3.44795 4.21427 4.46159 4.72134 4.76676 5.05089 5.09627 5.15695 5.20925 5.30877 5.36820 5.45741 5.47946 5.55652 5.59798 5.76434 5.83123 5.95463 6.01499 6.06578 6.08515 6.09600 6.16158 6.20383 6.28868 6.34731 6.37445 6.44577 6.49120 6.56412 6.64057 6.76762 6.80910 7.08484 7.19591 7.28796 7.51935 7.79384 7.84046 8.52027 9.20085 9.84269 10.41774 11.20932 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.021569 B = 0.006208 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.876291 B = 4508.905432 C = 5335.370022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.008 3.992 3 Si 0.898 3.102 4 H -0.290 1.290 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.252 4.252 8 H 0.062 0.938 9 N -0.547 5.547 10 C 0.152 3.848 11 C 0.060 3.940 12 H 0.064 0.936 13 C -0.143 4.143 14 C -0.126 4.126 15 H 0.081 0.919 16 C -0.106 4.106 17 C -0.119 4.119 18 C -0.114 4.114 19 C -0.107 4.107 20 C 0.071 3.929 21 H 0.050 0.950 22 O -0.351 6.351 23 C 0.141 3.859 24 C -0.204 4.204 25 C -0.216 4.216 26 H 0.256 0.744 27 H 0.030 0.970 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.019 -8.584 -11.686 14.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.191 4.191 3 Si 0.728 3.272 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.382 4.382 8 H 0.080 0.920 9 N -0.263 5.263 10 C 0.026 3.974 11 C 0.001 3.999 12 H 0.082 0.918 13 C -0.181 4.181 14 C -0.145 4.145 15 H 0.099 0.901 16 C -0.144 4.144 17 C -0.156 4.156 18 C -0.152 4.152 19 C -0.145 4.145 20 C 0.012 3.988 21 H 0.068 0.932 22 O -0.270 6.270 23 C 0.032 3.968 24 C -0.243 4.243 25 C -0.257 4.257 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.130 0.870 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.099 -8.533 -11.519 14.336 hybrid contribution 0.520 1.025 -0.160 1.160 sum 0.420 -7.507 -11.679 13.891 Atomic orbital electron populations 1.69909 1.05483 1.25854 1.52206 1.25117 0.95064 0.98589 1.00336 0.86426 0.79176 0.83244 0.78362 1.21563 1.20683 1.20951 1.18964 0.94576 0.85325 1.39286 0.92016 1.43297 1.48600 1.01358 1.33015 1.21260 0.90287 1.02913 0.82983 1.24139 0.95490 0.82933 0.97324 0.91752 1.22758 1.01341 0.96407 0.97620 1.22526 0.98987 0.97731 0.95221 0.90101 1.21516 1.01716 0.96258 0.94910 1.21658 0.97988 0.96054 0.99944 1.21492 0.98004 1.00484 0.95214 1.21329 1.02544 0.95393 0.95212 1.22455 0.95265 0.95660 0.85376 0.93219 1.88911 1.84699 1.31535 1.21869 1.20958 0.90709 0.90102 0.95040 1.23125 1.07863 1.01949 0.91314 1.23239 1.01492 0.98759 1.02225 0.93385 0.95146 0.87039 0.90570 0.91671 0.91876 0.91799 0.92281 0.92094 0.92162 0.91836 0.91474 0.91313 0.89887 0.88566 0.91024 0.91212 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.17 11.32 55.49 0.63 -24.54 16 2 C 0.01 0.23 4.97 -17.43 -0.09 0.14 16 3 Si 0.90 21.48 29.61 -169.99 -5.03 16.45 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.25 -6.86 8.23 -15.06 -0.12 -6.99 16 8 H 0.06 1.71 7.11 -52.49 -0.37 1.34 16 9 N -0.55 -13.89 2.78 -165.66 -0.46 -14.35 16 10 C 0.15 3.58 4.83 -4.04 -0.02 3.56 16 11 C 0.06 1.24 3.66 -25.63 -0.09 1.15 16 12 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 13 C -0.14 -2.37 6.31 -25.51 -0.16 -2.53 16 14 C -0.13 -1.80 2.66 -89.80 -0.24 -2.04 16 15 H 0.08 1.19 8.09 -51.92 -0.42 0.77 16 16 C -0.11 -1.22 5.62 -26.62 -0.15 -1.37 16 17 C -0.12 -1.18 5.86 -26.26 -0.15 -1.34 16 18 C -0.11 -1.18 5.85 -26.55 -0.16 -1.33 16 19 C -0.11 -1.39 5.96 -27.10 -0.16 -1.55 16 20 C 0.07 1.12 2.75 -26.21 -0.07 1.05 16 21 H 0.05 0.79 7.95 -51.93 -0.41 0.38 16 22 O -0.35 -7.03 10.88 -35.23 -0.38 -7.41 16 23 C 0.14 3.25 6.33 -67.93 -0.43 2.82 16 24 C -0.20 -4.34 9.78 -26.70 -0.26 -4.60 16 25 C -0.22 -4.53 10.20 -26.69 -0.27 -4.80 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.03 0.70 8.05 -51.93 -0.42 0.28 16 28 H 0.11 2.89 5.35 -51.93 -0.28 2.62 16 29 H 0.08 1.26 7.73 -51.93 -0.40 0.86 16 30 H 0.06 1.01 8.03 -51.93 -0.42 0.59 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.73 8.01 -51.93 -0.42 0.31 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 39 H 0.08 1.83 8.11 -51.93 -0.42 1.41 16 40 H 0.10 2.23 6.76 -51.93 -0.35 1.88 16 41 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 331.94 15.07 5.00 5.00 Total: -1.00 -28.43 331.94 -10.32 -38.74 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -7.69 Total: 3.94 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -2.38 Total: -17.84 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.17 Total: -38.89 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.38 Total: -7.41 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.43 -10.32 -38.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687712594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.077 kcal (2) G-P(sol) polarization free energy of solvation -28.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds