Wall clock time and date at job start Mon Mar 30 2020 07:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00285 * 2 1 4 4 H 1.48493 * 109.47190 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47118 * 119.99990 * 3 2 1 6 6 H 1.48501 * 109.47034 * 239.99647 * 3 2 1 7 7 C 1.38816 * 119.99271 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99343 * 201.75713 * 7 2 1 9 9 N 1.36929 * 120.00383 * 21.75739 * 7 2 1 10 10 C 1.46500 * 120.00183 * 35.17832 * 9 7 2 11 11 C 1.52999 * 109.46959 * 90.00112 * 10 9 7 12 12 H 1.09003 * 109.90135 * 306.09345 * 11 10 9 13 13 C 1.55079 * 109.91023 * 185.00494 * 11 10 9 14 14 C 1.53242 * 103.07308 * 242.29389 * 13 11 10 15 15 H 1.09009 * 110.83587 * 90.93371 * 14 13 11 16 16 C 1.51852 * 115.63143 * 218.66565 * 14 13 11 17 17 C 1.54317 * 106.98031 * 176.08248 * 16 14 13 18 18 C 1.52578 * 111.42702 * 301.84068 * 17 16 14 19 19 C 1.53763 * 111.39930 * 54.86971 * 18 17 16 20 20 C 1.51485 * 107.34606 * 302.55450 * 19 18 17 21 21 H 1.08998 * 109.67862 * 305.44242 * 20 19 18 22 22 O 1.42303 * 117.36317 * 179.43715 * 20 19 18 23 23 C 1.46505 * 119.99972 * 215.18186 * 9 7 2 24 24 C 1.52994 * 117.49722 * 10.48095 * 23 9 7 25 25 C 1.53003 * 117.49664 * 301.82148 * 23 9 7 26 26 H 0.96997 * 119.99146 * 358.08758 * 1 2 3 27 27 H 1.08994 * 109.47350 * 210.00021 * 10 9 7 28 28 H 1.09005 * 109.46831 * 330.00015 * 10 9 7 29 29 H 1.08995 * 110.69826 * 0.68992 * 13 11 10 30 30 H 1.08995 * 110.69888 * 123.90284 * 13 11 10 31 31 H 1.09000 * 109.89663 * 295.29953 * 16 14 13 32 32 H 1.09000 * 109.89035 * 56.40785 * 16 14 13 33 33 H 1.08996 * 109.00574 * 181.40939 * 17 16 14 34 34 H 1.08995 * 109.20970 * 62.40272 * 17 16 14 35 35 H 1.08998 * 109.09231 * 294.37408 * 18 17 16 36 36 H 1.09002 * 109.04435 * 175.32765 * 18 17 16 37 37 H 1.09002 * 109.88341 * 183.09650 * 19 18 17 38 38 H 1.08995 * 109.94168 * 62.04512 * 19 18 17 39 39 H 1.08997 * 115.54918 * 156.15857 * 23 9 7 40 40 H 1.08995 * 117.50178 * 0.02562 * 24 23 9 41 41 H 1.09007 * 117.49403 * 145.02296 * 24 23 9 42 42 H 1.08999 * 117.50007 * 214.98135 * 25 23 9 43 43 H 1.09003 * 117.49773 * 0.02562 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1041 1.6962 -1.2125 7 6 2.0101 -1.2023 -0.0005 8 1 3.0324 -1.2357 0.3462 9 7 1.3986 -2.3456 -0.4406 10 6 0.4400 -2.2845 -1.5468 11 6 1.1790 -2.4747 -2.8730 12 1 1.9945 -1.7556 -2.9498 13 6 0.1955 -2.2865 -4.0572 14 6 0.2103 -3.6576 -4.7413 15 1 -0.5680 -4.3028 -4.3335 16 6 0.1659 -3.6350 -6.2590 17 6 0.2899 -5.0976 -6.7353 18 6 1.5768 -5.7417 -6.2284 19 6 1.6916 -5.6373 -4.6987 20 6 1.6226 -4.1672 -4.3398 21 1 2.3825 -3.6177 -4.8954 22 8 1.6973 -3.8264 -2.9602 23 6 1.7028 -3.6302 0.1949 24 6 2.5141 -3.6022 1.4917 25 6 3.1618 -4.0909 0.1937 26 1 -0.4849 0.8396 0.0280 27 1 -0.3025 -3.0735 -1.4282 28 1 -0.0570 -1.3143 -1.5436 29 1 -0.8040 -2.0481 -3.6937 30 1 0.5541 -1.5133 -4.7366 31 1 -0.7817 -3.2150 -6.5962 32 1 0.9942 -3.0412 -6.6454 33 1 0.2868 -5.1174 -7.8251 34 1 -0.5629 -5.6681 -6.3674 35 1 2.4302 -5.2405 -6.6851 36 1 1.5853 -6.7932 -6.5157 37 1 2.6429 -6.0550 -4.3689 38 1 0.8682 -6.1731 -4.2266 39 1 0.9331 -4.3960 0.0990 40 1 2.8211 -2.6281 1.8723 41 1 2.2783 -4.3499 2.2490 42 1 3.3520 -5.1599 0.0976 43 1 3.8954 -3.4381 -0.2794 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687712594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:02 Heat of formation + Delta-G solvation = -26.855266 kcal Electronic energy + Delta-G solvation = -21463.214378 eV Core-core repulsion = 18508.490739 eV Total energy + Delta-G solvation = -2954.723638 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.28924 -38.74022 -37.14763 -35.32546 -33.58526 -32.53407 -30.53071 -30.02437 -27.09454 -25.25755 -23.04112 -22.93045 -22.52210 -21.79537 -21.64903 -20.88375 -18.37814 -17.37850 -16.78056 -16.56847 -16.33630 -15.98698 -15.65072 -15.50488 -14.99613 -14.53595 -14.29999 -13.76848 -13.71952 -13.39343 -13.09632 -12.95141 -12.82920 -12.73504 -12.68255 -12.27511 -12.18870 -12.03117 -11.94524 -11.75321 -11.63191 -11.44994 -11.32619 -11.30661 -10.87597 -10.80163 -10.43549 -10.30911 -8.46800 -7.83028 -5.42687 1.43581 1.45816 1.52862 2.47239 2.92475 3.14250 3.40635 3.55619 3.71854 3.75638 3.91677 4.11760 4.17789 4.29124 4.31371 4.38429 4.41791 4.49510 4.52192 4.57436 4.62665 4.67804 4.73491 4.89293 4.93680 4.94795 5.01620 5.04764 5.11378 5.18847 5.23288 5.26664 5.31940 5.35372 5.39844 5.42588 5.53724 5.54408 5.60662 5.70757 6.27054 6.44615 7.14306 7.85344 8.38112 9.11569 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.021569 B = 0.006208 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.876291 B = 4508.905432 C = 5335.370022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.035 4.035 3 Si 0.956 3.044 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.282 1.282 7 C -0.259 4.259 8 H 0.051 0.949 9 N -0.564 5.564 10 C 0.156 3.844 11 C 0.070 3.930 12 H 0.033 0.967 13 C -0.138 4.138 14 C -0.114 4.114 15 H 0.078 0.922 16 C -0.104 4.104 17 C -0.116 4.116 18 C -0.110 4.110 19 C -0.104 4.104 20 C 0.061 3.939 21 H 0.046 0.954 22 O -0.373 6.373 23 C 0.114 3.886 24 C -0.195 4.195 25 C -0.196 4.196 26 H 0.255 0.745 27 H 0.027 0.973 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.163 -9.829 -13.288 16.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.232 4.232 3 Si 0.784 3.216 4 H -0.212 1.212 5 H -0.203 1.203 6 H -0.208 1.208 7 C -0.390 4.390 8 H 0.068 0.932 9 N -0.280 5.280 10 C 0.030 3.970 11 C 0.010 3.990 12 H 0.052 0.948 13 C -0.176 4.176 14 C -0.133 4.133 15 H 0.096 0.904 16 C -0.141 4.141 17 C -0.154 4.154 18 C -0.147 4.147 19 C -0.142 4.142 20 C 0.002 3.998 21 H 0.064 0.936 22 O -0.293 6.293 23 C 0.006 3.994 24 C -0.234 4.234 25 C -0.236 4.236 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.094 -9.800 -13.130 16.384 hybrid contribution 0.490 1.341 0.368 1.474 sum 0.584 -8.459 -12.762 15.322 Atomic orbital electron populations 1.70029 1.06572 1.26291 1.53249 1.25743 0.95774 1.01164 1.00486 0.85517 0.78018 0.79770 0.78266 1.21249 1.20271 1.20789 1.19042 0.94226 0.86527 1.39156 0.93178 1.43468 1.48860 1.01761 1.33948 1.21122 0.90312 1.01297 0.84246 1.23751 0.94959 0.82988 0.97273 0.94844 1.22704 0.99987 0.98462 0.96486 1.22470 0.97849 0.95621 0.97362 0.90360 1.21534 1.02507 0.97833 0.92229 1.21658 0.97830 0.94592 1.01280 1.21492 0.98461 1.01989 0.92771 1.21368 1.02354 0.93015 0.97422 1.22753 0.96054 0.97786 0.83166 0.93583 1.88859 1.84818 1.30778 1.24848 1.21174 0.92055 0.89594 0.96586 1.23117 1.06876 1.01722 0.91669 1.23142 0.99315 0.99891 1.01290 0.93577 0.95500 0.89538 0.90791 0.90579 0.90633 0.91661 0.90068 0.91693 0.91810 0.89759 0.91748 0.91496 0.89132 0.90860 0.87980 0.88364 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.10 11.32 21.65 0.25 -52.86 16 2 C -0.03 -1.93 4.97 84.86 0.42 -1.51 16 3 Si 0.96 44.95 29.61 68.60 2.03 46.98 16 4 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.26 -14.54 8.23 84.04 0.69 -13.85 16 8 H 0.05 2.87 7.11 -2.91 -0.02 2.85 16 9 N -0.56 -29.43 2.78 -678.04 -1.89 -31.32 16 10 C 0.16 7.64 4.83 86.38 0.42 8.05 16 11 C 0.07 2.95 3.66 31.31 0.11 3.06 16 12 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 13 C -0.14 -4.58 6.31 31.39 0.20 -4.38 16 14 C -0.11 -3.13 2.66 -10.26 -0.03 -3.15 16 15 H 0.08 2.19 8.09 -2.38 -0.02 2.18 16 16 C -0.10 -2.10 5.62 30.66 0.17 -1.92 16 17 C -0.12 -1.90 5.86 30.90 0.18 -1.72 16 18 C -0.11 -1.91 5.85 30.71 0.18 -1.73 16 19 C -0.10 -2.50 5.96 30.36 0.18 -2.32 16 20 C 0.06 1.85 2.75 30.93 0.09 1.94 16 21 H 0.05 1.44 7.95 -2.39 -0.02 1.42 16 22 O -0.37 -15.12 10.88 -148.98 -1.62 -16.74 16 23 C 0.11 5.28 6.33 44.99 0.28 5.57 16 24 C -0.20 -8.21 9.78 30.62 0.30 -7.91 16 25 C -0.20 -8.06 10.20 30.62 0.31 -7.75 16 26 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 27 H 0.03 1.28 8.05 -2.39 -0.02 1.26 16 28 H 0.09 4.69 5.35 -2.38 -0.01 4.68 16 29 H 0.07 2.47 7.73 -2.39 -0.02 2.45 16 30 H 0.08 2.33 8.03 -2.39 -0.02 2.31 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.32 8.01 -2.39 -0.02 1.30 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.07 1.63 8.09 -2.39 -0.02 1.61 16 39 H 0.09 3.99 8.11 -2.39 -0.02 3.97 16 40 H 0.07 3.43 6.76 -2.39 -0.02 3.41 16 41 H 0.10 3.64 8.14 -2.38 -0.02 3.62 16 42 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 43 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -62.28 331.94 3.23 -59.05 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.95 Total: 22.51 kcal Atomic # 6 Polarization: -31.14 SS G_CDS: 3.51 Total: -27.62 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -1.64 Total: -84.18 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -1.62 Total: -16.74 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -62.28 3.23 -59.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687712594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.193 kcal (2) G-P(sol) polarization free energy of solvation -62.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds