Wall clock time and date at job start Mon Mar 30 2020 06:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.47048 * 2 1 4 4 C 1.52999 * 109.46767 * 240.00440 * 2 1 3 5 5 C 1.50710 * 109.47016 * 174.99885 * 4 2 1 6 6 H 1.07996 * 119.99617 * 359.97438 * 5 4 2 7 7 C 1.37870 * 119.99620 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00434 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99699 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46972 * 59.99957 * 9 7 5 11 11 H 1.48506 * 109.47469 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47285 * 300.00018 * 9 7 5 13 13 N 1.46894 * 109.47645 * 120.00080 * 2 1 3 14 14 C 1.46899 * 111.00314 * 259.86953 * 13 2 1 15 15 H 1.08998 * 109.47045 * 314.57524 * 14 13 2 16 16 C 1.53005 * 109.47114 * 74.56895 * 14 13 2 17 17 C 1.52994 * 109.47190 * 194.57150 * 14 13 2 18 18 C 1.50702 * 109.47178 * 65.00290 * 17 14 13 19 19 C 1.38250 * 119.97027 * 270.23183 * 18 17 14 20 20 C 1.38194 * 120.02434 * 180.27806 * 19 18 17 21 21 C 1.38458 * 119.97327 * 359.46642 * 20 19 18 22 22 F 1.35095 * 120.02647 * 180.30216 * 21 20 19 23 23 C 1.38456 * 119.94996 * 0.27878 * 21 20 19 24 24 C 1.38195 * 119.97571 * 0.02562 * 23 21 20 25 25 H 1.08997 * 109.47549 * 64.28959 * 1 2 3 26 26 H 1.08997 * 109.46744 * 184.29350 * 1 2 3 27 27 H 1.09002 * 109.46671 * 304.29250 * 1 2 3 28 28 H 1.08998 * 109.46831 * 294.99293 * 4 2 1 29 29 H 1.09002 * 109.47215 * 54.99761 * 4 2 1 30 30 H 0.97006 * 120.00076 * 180.02562 * 8 7 5 31 31 H 1.00899 * 111.00435 * 135.90902 * 13 2 1 32 32 H 1.09000 * 109.47143 * 293.78779 * 16 14 13 33 33 H 1.08998 * 109.46917 * 53.78688 * 16 14 13 34 34 H 1.08999 * 109.47168 * 173.78533 * 16 14 13 35 35 H 1.08997 * 109.47454 * 304.99434 * 17 14 13 36 36 H 1.09002 * 109.47022 * 184.99437 * 17 14 13 37 37 H 1.08001 * 119.98839 * 0.04268 * 19 18 17 38 38 H 1.08001 * 120.01651 * 179.74079 * 20 19 18 39 39 H 1.07998 * 120.01597 * 180.02562 * 23 21 20 40 40 H 1.07997 * 119.99342 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3129 6 1 4.0789 -0.0854 -0.5397 7 6 4.2302 -1.1925 -2.3585 8 7 3.5762 -1.8367 -3.3002 9 14 6.0919 -1.0601 -2.4377 10 1 6.6845 -1.6863 -1.2286 11 1 6.5869 -1.7601 -3.6502 12 1 6.4843 0.3709 -2.4969 13 7 2.0198 -0.6925 1.1993 14 6 2.4228 0.2687 2.2346 15 1 3.0202 1.0604 1.7825 16 6 1.1755 0.8762 2.8797 17 6 3.2510 -0.4490 3.3021 18 6 4.5383 -0.9412 2.6925 19 6 4.5964 -2.2002 2.1244 20 6 5.7778 -2.6550 1.5701 21 6 6.9006 -1.8448 1.5740 22 9 8.0544 -2.2859 1.0270 23 6 6.8398 -0.5820 2.1385 24 6 5.6590 -0.1318 2.6978 25 1 -0.3634 0.4458 -0.9259 26 1 -0.3633 -1.0248 0.0769 27 1 -0.3633 0.5790 0.8491 28 1 1.7516 -1.7714 -1.2056 29 1 1.6052 -0.2616 -2.1370 30 1 4.0606 -2.2434 -4.0357 31 1 2.7782 -1.3178 0.9716 32 1 0.6431 1.4794 2.1443 33 1 0.5242 0.0774 3.2345 34 1 1.4705 1.5046 3.7201 35 1 2.6863 -1.2959 3.6917 36 1 3.4749 0.2429 4.1142 37 1 3.7191 -2.8302 2.1172 38 1 5.8241 -3.6402 1.1301 39 1 7.7148 0.0510 2.1417 40 1 5.6112 0.8533 3.1378 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695781172.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:54 Heat of formation + Delta-G solvation = -45.141741 kcal Electronic energy + Delta-G solvation = -20886.341950 eV Core-core repulsion = 17807.365045 eV Total energy + Delta-G solvation = -3078.976904 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.154 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.55885 -39.20609 -37.05701 -33.95175 -32.22434 -30.86857 -30.42960 -28.15976 -27.25893 -25.87783 -23.00345 -22.79235 -21.52716 -19.93790 -19.42761 -17.37490 -16.32004 -16.10775 -15.49089 -15.43211 -15.16277 -14.68214 -14.29555 -14.00136 -13.45730 -13.29721 -13.03437 -12.66097 -12.39486 -12.04683 -11.93774 -11.71367 -11.61386 -11.47639 -11.25525 -10.98043 -10.90296 -10.69753 -10.54985 -10.45670 -10.28924 -10.11097 -9.18003 -9.06462 -8.79037 -8.37110 -8.18786 -7.60950 -6.00491 -4.03256 1.44447 1.53841 3.34212 3.38713 3.43945 3.86129 4.46594 4.59856 4.83567 4.95407 5.00764 5.17264 5.33732 5.37259 5.50309 5.55242 5.68581 5.76008 5.88859 6.01014 6.05231 6.07472 6.17588 6.25862 6.29031 6.39925 6.41993 6.44504 6.52063 6.58572 6.66056 6.81224 6.95278 7.02477 7.19771 7.54826 7.65581 7.98157 8.10551 8.34041 8.39965 9.02872 9.61924 11.10065 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.013019 B = 0.010478 C = 0.006380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.160730 B = 2671.624987 C = 4387.949394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.087 3.913 3 H 0.035 0.965 4 C 0.015 3.985 5 C -0.518 4.518 6 H 0.050 0.950 7 C 0.066 3.934 8 N -0.892 5.892 9 Si 0.875 3.125 10 H -0.266 1.266 11 H -0.289 1.289 12 H -0.280 1.280 13 N -0.682 5.682 14 C 0.087 3.913 15 H 0.037 0.963 16 C -0.140 4.140 17 C -0.077 4.077 18 C -0.092 4.092 19 C -0.074 4.074 20 C -0.139 4.139 21 C 0.095 3.905 22 F -0.145 7.145 23 C -0.157 4.157 24 C -0.090 4.090 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.022 0.978 29 H 0.020 0.980 30 H 0.260 0.740 31 H 0.355 0.645 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.901 2.188 13.693 13.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.023 4.023 3 H 0.053 0.947 4 C -0.023 4.023 5 C -0.557 4.557 6 H 0.068 0.932 7 C -0.136 4.136 8 N -0.531 5.531 9 Si 0.702 3.298 10 H -0.191 1.191 11 H -0.214 1.214 12 H -0.205 1.205 13 N -0.318 5.318 14 C -0.023 4.023 15 H 0.055 0.945 16 C -0.198 4.198 17 C -0.114 4.114 18 C -0.093 4.093 19 C -0.092 4.092 20 C -0.158 4.158 21 C 0.076 3.924 22 F -0.124 7.124 23 C -0.176 4.176 24 C -0.109 4.109 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.041 0.959 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.179 0.821 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.353 1.965 13.759 13.903 hybrid contribution 2.224 0.360 -0.918 2.433 sum 2.577 2.325 12.840 13.301 Atomic orbital electron populations 1.21902 0.96861 1.01133 0.99515 1.21625 0.93307 0.96251 0.91110 0.94719 1.19402 0.95539 0.95980 0.91349 1.21084 0.91978 1.34386 1.08202 0.93172 1.24904 0.97801 0.95182 0.95674 1.69948 1.35444 1.35726 1.11948 0.86914 0.86520 0.78315 0.78008 1.19079 1.21448 1.20531 1.60772 1.41306 1.19469 1.10244 1.21478 0.94285 0.93924 0.92652 0.94473 1.21890 0.97971 1.00260 0.99634 1.20751 0.92393 1.00870 0.97415 1.19931 0.95451 0.94353 0.99530 1.20917 0.96905 0.95618 0.95766 1.21114 0.92262 1.00864 1.01563 1.17699 0.82452 0.94202 0.98095 1.91464 1.47514 1.89713 1.83721 1.21017 0.99783 0.94967 1.01807 1.20789 0.91708 0.99258 0.99099 0.93681 0.92911 0.94018 0.95932 0.96187 0.93006 0.82149 0.92582 0.92124 0.93423 0.90178 0.90919 0.84666 0.84980 0.85374 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.31 37.16 0.35 -2.08 16 2 C 0.09 1.78 2.30 -67.71 -0.16 1.63 16 3 H 0.03 0.74 7.37 -51.92 -0.38 0.36 16 4 C 0.01 0.37 4.45 -27.88 -0.12 0.25 16 5 C -0.52 -14.16 8.14 -34.44 -0.28 -14.44 16 6 H 0.05 1.37 7.73 -52.49 -0.41 0.96 16 7 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 8 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 9 Si 0.87 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.27 -6.53 6.73 56.52 0.38 -6.14 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 13 N -0.68 -12.62 6.15 -99.74 -0.61 -13.24 16 14 C 0.09 1.35 2.54 -67.71 -0.17 1.17 16 15 H 0.04 0.64 7.67 -51.93 -0.40 0.25 16 16 C -0.14 -1.84 8.62 37.16 0.32 -1.52 16 17 C -0.08 -1.01 5.02 -27.89 -0.14 -1.14 16 18 C -0.09 -1.38 4.79 -104.61 -0.50 -1.88 16 19 C -0.07 -1.18 7.99 -39.59 -0.32 -1.50 16 20 C -0.14 -2.39 10.03 -39.52 -0.40 -2.78 16 21 C 0.09 1.68 6.93 -39.42 -0.27 1.41 16 22 F -0.15 -2.70 17.27 2.25 0.04 -2.66 16 23 C -0.16 -2.47 10.03 -39.52 -0.40 -2.87 16 24 C -0.09 -1.32 9.70 -39.59 -0.38 -1.70 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.04 0.65 5.94 -51.93 -0.31 0.34 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.36 7.17 4.47 -39.29 -0.18 6.99 16 32 H 0.06 0.77 6.27 -51.93 -0.33 0.45 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 36 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 37 H 0.14 2.00 7.75 -52.49 -0.41 1.60 16 38 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 39 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 40 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 327.18 15.07 4.93 4.93 Total: -1.00 -29.76 327.18 -8.70 -38.46 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.20 Total: 5.10 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: -2.57 Total: -23.69 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.12 Total: -39.09 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.76 -8.70 -38.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695781172.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.677 kcal (2) G-P(sol) polarization free energy of solvation -29.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds