Wall clock time and date at job start Mon Mar 30 2020 06:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.47048 * 2 1 4 4 C 1.52999 * 109.46767 * 240.00440 * 2 1 3 5 5 C 1.50710 * 109.47016 * 174.99885 * 4 2 1 6 6 H 1.07996 * 119.99617 * 359.97438 * 5 4 2 7 7 C 1.37870 * 119.99620 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00434 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99699 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46972 * 59.99957 * 9 7 5 11 11 H 1.48506 * 109.47469 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47285 * 300.00018 * 9 7 5 13 13 N 1.46894 * 109.47645 * 120.00080 * 2 1 3 14 14 C 1.46899 * 111.00314 * 259.86953 * 13 2 1 15 15 H 1.08998 * 109.47045 * 314.57524 * 14 13 2 16 16 C 1.53005 * 109.47114 * 74.56895 * 14 13 2 17 17 C 1.52994 * 109.47190 * 194.57150 * 14 13 2 18 18 C 1.50702 * 109.47178 * 65.00290 * 17 14 13 19 19 C 1.38250 * 119.97027 * 270.23183 * 18 17 14 20 20 C 1.38194 * 120.02434 * 180.27806 * 19 18 17 21 21 C 1.38458 * 119.97327 * 359.46642 * 20 19 18 22 22 F 1.35095 * 120.02647 * 180.30216 * 21 20 19 23 23 C 1.38456 * 119.94996 * 0.27878 * 21 20 19 24 24 C 1.38195 * 119.97571 * 0.02562 * 23 21 20 25 25 H 1.08997 * 109.47549 * 64.28959 * 1 2 3 26 26 H 1.08997 * 109.46744 * 184.29350 * 1 2 3 27 27 H 1.09002 * 109.46671 * 304.29250 * 1 2 3 28 28 H 1.08998 * 109.46831 * 294.99293 * 4 2 1 29 29 H 1.09002 * 109.47215 * 54.99761 * 4 2 1 30 30 H 0.97006 * 120.00076 * 180.02562 * 8 7 5 31 31 H 1.00899 * 111.00435 * 135.90902 * 13 2 1 32 32 H 1.09000 * 109.47143 * 293.78779 * 16 14 13 33 33 H 1.08998 * 109.46917 * 53.78688 * 16 14 13 34 34 H 1.08999 * 109.47168 * 173.78533 * 16 14 13 35 35 H 1.08997 * 109.47454 * 304.99434 * 17 14 13 36 36 H 1.09002 * 109.47022 * 184.99437 * 17 14 13 37 37 H 1.08001 * 119.98839 * 0.04268 * 19 18 17 38 38 H 1.08001 * 120.01651 * 179.74079 * 20 19 18 39 39 H 1.07998 * 120.01597 * 180.02562 * 23 21 20 40 40 H 1.07997 * 119.99342 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3129 6 1 4.0789 -0.0854 -0.5397 7 6 4.2302 -1.1925 -2.3585 8 7 3.5762 -1.8367 -3.3002 9 14 6.0919 -1.0601 -2.4377 10 1 6.6845 -1.6863 -1.2286 11 1 6.5869 -1.7601 -3.6502 12 1 6.4843 0.3709 -2.4969 13 7 2.0198 -0.6925 1.1993 14 6 2.4228 0.2687 2.2346 15 1 3.0202 1.0604 1.7825 16 6 1.1755 0.8762 2.8797 17 6 3.2510 -0.4490 3.3021 18 6 4.5383 -0.9412 2.6925 19 6 4.5964 -2.2002 2.1244 20 6 5.7778 -2.6550 1.5701 21 6 6.9006 -1.8448 1.5740 22 9 8.0544 -2.2859 1.0270 23 6 6.8398 -0.5820 2.1385 24 6 5.6590 -0.1318 2.6978 25 1 -0.3634 0.4458 -0.9259 26 1 -0.3633 -1.0248 0.0769 27 1 -0.3633 0.5790 0.8491 28 1 1.7516 -1.7714 -1.2056 29 1 1.6052 -0.2616 -2.1370 30 1 4.0606 -2.2434 -4.0357 31 1 2.7782 -1.3178 0.9716 32 1 0.6431 1.4794 2.1443 33 1 0.5242 0.0774 3.2345 34 1 1.4705 1.5046 3.7201 35 1 2.6863 -1.2959 3.6917 36 1 3.4749 0.2429 4.1142 37 1 3.7191 -2.8302 2.1172 38 1 5.8241 -3.6402 1.1301 39 1 7.7148 0.0510 2.1417 40 1 5.6112 0.8533 3.1378 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695781172.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:54 Heat of formation + Delta-G solvation = -61.207788 kcal Electronic energy + Delta-G solvation = -20887.038626 eV Core-core repulsion = 17807.365045 eV Total energy + Delta-G solvation = -3079.673581 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.154 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.91837 -40.42011 -38.49906 -35.61237 -34.10899 -32.07184 -31.73420 -29.51151 -29.20777 -27.00999 -25.00673 -24.01391 -22.76823 -21.21427 -21.03809 -18.65697 -18.48942 -17.38130 -16.98125 -16.69996 -16.53897 -16.35637 -15.97608 -15.32265 -14.82411 -14.49573 -14.35263 -14.22642 -13.87017 -13.73851 -13.30006 -13.19645 -13.00251 -12.90060 -12.67431 -12.64208 -12.55044 -12.22643 -12.12128 -11.92953 -11.73115 -11.58583 -11.14093 -10.95965 -10.58417 -10.00880 -9.44224 -9.10124 -8.21539 -6.29103 0.19755 0.32810 1.31377 1.35478 1.40825 2.35299 2.63986 3.12040 3.34601 3.53272 3.80553 3.83684 3.98068 4.20509 4.36046 4.37550 4.38861 4.53874 4.63849 4.72226 4.75782 4.83690 5.01473 5.02128 5.05993 5.09923 5.13888 5.19621 5.23217 5.31815 5.33046 5.41337 5.53283 5.55709 5.59205 5.66819 5.84442 5.99269 6.21821 6.52193 6.77308 6.85529 7.39542 8.89571 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.013019 B = 0.010478 C = 0.006380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.160730 B = 2671.624987 C = 4387.949394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.096 3.904 3 H 0.027 0.973 4 C 0.021 3.979 5 C -0.515 4.515 6 H 0.051 0.949 7 C 0.019 3.981 8 N -0.927 5.927 9 Si 0.930 3.070 10 H -0.260 1.260 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.681 5.681 14 C 0.083 3.917 15 H 0.021 0.979 16 C -0.134 4.134 17 C -0.069 4.069 18 C -0.094 4.094 19 C -0.085 4.085 20 C -0.160 4.160 21 C 0.064 3.936 22 F -0.157 7.157 23 C -0.161 4.161 24 C -0.089 4.089 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.069 0.931 28 H -0.003 1.003 29 H -0.008 1.008 30 H 0.261 0.739 31 H 0.344 0.656 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.140 0.860 38 H 0.130 0.870 39 H 0.149 0.851 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 3.753 15.968 16.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.014 4.014 3 H 0.045 0.955 4 C -0.017 4.017 5 C -0.553 4.553 6 H 0.069 0.931 7 C -0.179 4.179 8 N -0.567 5.567 9 Si 0.756 3.244 10 H -0.184 1.184 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.316 5.316 14 C -0.027 4.027 15 H 0.039 0.961 16 C -0.192 4.192 17 C -0.107 4.107 18 C -0.095 4.095 19 C -0.103 4.103 20 C -0.179 4.179 21 C 0.045 3.955 22 F -0.136 7.136 23 C -0.180 4.180 24 C -0.107 4.107 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.015 0.985 29 H 0.010 0.990 30 H 0.070 0.930 31 H 0.165 0.835 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.124 0.876 37 H 0.158 0.842 38 H 0.148 0.852 39 H 0.166 0.834 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.200 3.543 16.055 16.442 hybrid contribution 2.237 -0.113 -1.604 2.755 sum 2.437 3.431 14.451 15.051 Atomic orbital electron populations 1.21816 0.94599 1.01457 1.00735 1.21430 0.95106 0.94994 0.89863 0.95492 1.19295 0.94713 0.94761 0.92893 1.21324 0.92976 1.33358 1.07684 0.93075 1.25590 1.01613 0.95146 0.95600 1.70058 1.36975 1.36999 1.12695 0.86031 0.82030 0.78337 0.78010 1.18405 1.21548 1.20045 1.60875 1.41052 1.19917 1.09714 1.21637 0.95716 0.93023 0.92312 0.96126 1.21843 0.96635 1.00522 1.00159 1.20778 0.90916 1.01736 0.97230 1.20247 0.96607 0.93816 0.98789 1.21090 0.96605 0.96572 0.96000 1.21277 0.92942 1.01184 1.02450 1.18051 0.82343 0.95481 0.99652 1.91424 1.48047 1.89985 1.84127 1.21350 1.01160 0.94353 1.01129 1.21204 0.90891 1.00413 0.98208 0.93775 0.93261 0.91265 0.98457 0.98955 0.93050 0.83453 0.93407 0.91713 0.90523 0.89250 0.87564 0.84218 0.85186 0.83371 0.82310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 9.31 71.98 0.67 -3.72 16 2 C 0.10 3.89 2.30 44.92 0.10 3.99 16 3 H 0.03 1.13 7.37 -2.38 -0.02 1.12 16 4 C 0.02 1.08 4.45 29.85 0.13 1.21 16 5 C -0.52 -28.39 8.14 25.60 0.21 -28.18 16 6 H 0.05 2.77 7.73 -2.91 -0.02 2.74 16 7 C 0.02 1.09 5.46 84.65 0.46 1.55 16 8 N -0.93 -56.39 13.29 21.44 0.28 -56.11 16 9 Si 0.93 45.59 29.54 68.60 2.03 47.62 16 10 H -0.26 -12.41 6.73 99.48 0.67 -11.74 16 11 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 N -0.68 -24.22 6.15 -469.47 -2.89 -27.11 16 14 C 0.08 2.32 2.54 44.92 0.11 2.43 16 15 H 0.02 0.66 7.67 -2.39 -0.02 0.64 16 16 C -0.13 -2.99 8.62 71.98 0.62 -2.37 16 17 C -0.07 -1.56 5.02 29.85 0.15 -1.41 16 18 C -0.09 -2.60 4.79 -19.86 -0.10 -2.69 16 19 C -0.08 -2.64 7.99 22.26 0.18 -2.46 16 20 C -0.16 -5.50 10.03 22.31 0.22 -5.28 16 21 C 0.06 2.23 6.93 22.37 0.16 2.39 16 22 F -0.16 -5.82 17.27 44.97 0.78 -5.04 16 23 C -0.16 -4.77 10.03 22.31 0.22 -4.55 16 24 C -0.09 -2.34 9.70 22.26 0.22 -2.12 16 25 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.07 1.99 5.94 -2.39 -0.01 1.97 16 28 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 29 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 30 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 31 H 0.34 13.64 4.47 -89.69 -0.40 13.24 16 32 H 0.05 1.15 6.27 -2.39 -0.01 1.13 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.89 8.09 -2.39 -0.02 1.87 16 36 H 0.11 1.74 8.08 -2.39 -0.02 1.72 16 37 H 0.14 4.10 7.75 -2.91 -0.02 4.08 16 38 H 0.13 4.32 8.06 -2.91 -0.02 4.29 16 39 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 40 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -64.65 327.18 4.14 -60.51 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.58 Total: 21.35 kcal Atomic # 6 Polarization: -44.58 SS G_CDS: 3.36 Total: -41.21 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -2.60 Total: -83.22 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 0.78 Total: -5.04 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -64.65 4.14 -60.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695781172.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.700 kcal (2) G-P(sol) polarization free energy of solvation -64.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds