Wall clock time and date at job start Mon Mar 30 2020 06:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.47154 * 2 1 4 4 C 1.52996 * 109.47347 * 119.99844 * 2 1 3 5 5 C 1.50702 * 109.47159 * 185.00014 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46899 * 109.47404 * 240.00466 * 2 1 3 14 14 C 1.46896 * 111.00161 * 84.99487 * 13 2 1 15 15 H 1.08997 * 109.47494 * 325.00170 * 14 13 2 16 16 C 1.53005 * 109.46994 * 85.00459 * 14 13 2 17 17 C 1.53001 * 109.46898 * 205.00068 * 14 13 2 18 18 C 1.50702 * 109.46982 * 65.00650 * 17 14 13 19 19 C 1.38247 * 119.96819 * 269.72134 * 18 17 14 20 20 C 1.38207 * 120.02253 * 179.72436 * 19 18 17 21 21 C 1.38456 * 119.97163 * 0.57683 * 20 19 18 22 22 F 1.35102 * 120.02492 * 179.68416 * 21 20 19 23 23 C 1.38458 * 119.94930 * 359.69563 * 21 20 19 24 24 C 1.38193 * 119.97813 * 0.02562 * 23 21 20 25 25 H 1.09003 * 109.47483 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.47295 * 60.00152 * 1 2 3 27 27 H 1.09001 * 109.47340 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47066 * 65.00217 * 4 2 1 29 29 H 1.08994 * 109.47405 * 305.00047 * 4 2 1 30 30 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 31 31 H 1.00906 * 111.00046 * 208.95603 * 13 2 1 32 32 H 1.09003 * 109.46914 * 59.99814 * 16 14 13 33 33 H 1.09001 * 109.46666 * 179.97438 * 16 14 13 34 34 H 1.08998 * 109.46788 * 299.99840 * 16 14 13 35 35 H 1.09000 * 109.46994 * 184.99750 * 17 14 13 36 36 H 1.08998 * 109.47388 * 305.00090 * 17 14 13 37 37 H 1.07999 * 119.99220 * 359.97438 * 19 18 17 38 38 H 1.07997 * 120.01326 * 180.25154 * 20 19 18 39 39 H 1.07999 * 120.01086 * 180.02562 * 23 21 20 40 40 H 1.08001 * 119.99235 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3126 6 1 4.0790 -0.0854 0.5395 7 6 4.2300 -1.1881 2.3611 8 7 3.5760 -1.8324 3.3027 9 14 6.0909 -1.0496 2.4437 10 1 6.4787 0.3828 2.5007 11 1 6.5856 -1.7455 3.6588 12 1 6.6882 -1.6765 1.2372 13 7 2.0197 -0.6924 -1.1995 14 6 2.0824 0.2227 -2.3469 15 1 1.2575 0.9330 -2.2907 16 6 3.4111 0.9811 -2.3223 17 6 1.9770 -0.5796 -3.6454 18 6 0.6190 -1.2280 -3.7264 19 6 0.4262 -2.4942 -3.2061 20 6 -0.8202 -3.0876 -3.2747 21 6 -1.8728 -2.4182 -3.8755 22 9 -3.0900 -2.9999 -3.9488 23 6 -1.6770 -1.1524 -4.4013 24 6 -0.4313 -0.5587 -4.3264 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.7517 -1.7715 1.2056 29 1 1.6054 -0.2617 2.1369 30 1 4.0601 -2.2360 4.0401 31 1 2.9174 -1.1204 -1.0287 32 1 4.2359 0.2707 -2.3786 33 1 3.4577 1.6597 -3.1740 34 1 3.4861 1.5526 -1.3972 35 1 2.1124 0.0875 -4.4967 36 1 2.7487 -1.3493 -3.6606 37 1 1.2487 -3.0183 -2.7422 38 1 -0.9716 -4.0751 -2.8645 39 1 -2.4975 -0.6292 -4.8697 40 1 -0.2782 0.4285 -4.7368 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695781182.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:02 Heat of formation + Delta-G solvation = -61.695592 kcal Electronic energy + Delta-G solvation = -20169.027197 eV Core-core repulsion = 17089.332464 eV Total energy + Delta-G solvation = -3079.694733 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.79923 -40.19403 -38.55420 -35.57926 -34.07769 -31.92459 -31.82372 -29.37645 -28.93518 -27.05644 -25.06904 -23.83909 -22.73285 -21.29637 -21.03731 -18.50982 -18.45304 -17.26911 -16.85218 -16.51295 -16.45371 -16.43220 -15.42906 -15.08252 -14.84570 -14.37644 -14.36114 -14.24201 -13.97366 -13.65133 -13.48507 -13.27697 -13.02946 -12.75974 -12.75485 -12.58464 -12.42732 -12.24926 -12.02266 -11.87447 -11.73218 -11.55388 -11.20785 -10.93487 -10.53935 -9.89230 -9.33496 -8.98519 -8.15848 -6.25708 0.33383 0.46380 1.41519 1.42988 1.50553 2.42372 2.78599 3.16312 3.43451 3.53314 3.92802 3.94667 4.09049 4.27056 4.33919 4.44377 4.54001 4.55135 4.59114 4.66312 4.74422 4.84786 4.91585 5.05682 5.09657 5.13450 5.20503 5.26306 5.31110 5.33142 5.35657 5.43068 5.47974 5.54820 5.61706 5.83438 5.88931 6.11765 6.25353 6.55291 6.80218 6.90142 7.43002 8.95733 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.024434 B = 0.004744 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.681735 B = 5900.549200 C = 6369.547439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.103 3.897 3 H 0.024 0.976 4 C 0.029 3.971 5 C -0.527 4.527 6 H 0.062 0.938 7 C 0.003 3.997 8 N -0.933 5.933 9 Si 0.958 3.042 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.673 5.673 14 C 0.088 3.912 15 H 0.072 0.928 16 C -0.176 4.176 17 C -0.063 4.063 18 C -0.071 4.071 19 C -0.071 4.071 20 C -0.166 4.166 21 C 0.063 3.937 22 F -0.155 7.155 23 C -0.157 4.157 24 C -0.094 4.094 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.042 0.958 28 H -0.006 1.006 29 H -0.013 1.013 30 H 0.261 0.739 31 H 0.342 0.658 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.148 0.852 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.435 3.554 -17.641 18.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.007 4.007 3 H 0.042 0.958 4 C -0.009 4.009 5 C -0.565 4.565 6 H 0.081 0.919 7 C -0.194 4.194 8 N -0.573 5.573 9 Si 0.783 3.217 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.305 5.305 14 C -0.022 4.022 15 H 0.090 0.910 16 C -0.235 4.235 17 C -0.101 4.101 18 C -0.071 4.071 19 C -0.089 4.089 20 C -0.185 4.185 21 C 0.045 3.955 22 F -0.134 7.134 23 C -0.176 4.176 24 C -0.111 4.111 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.013 0.987 29 H 0.006 0.994 30 H 0.070 0.930 31 H 0.162 0.838 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.117 0.883 36 H 0.091 0.909 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.166 0.834 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.080 3.185 -17.652 18.939 hybrid contribution 1.278 0.067 1.166 1.731 sum -4.802 3.252 -16.486 17.476 Atomic orbital electron populations 1.21666 0.95343 1.00802 1.00292 1.21287 0.94208 0.94832 0.90346 0.95792 1.19115 0.94928 0.94563 0.92260 1.21500 0.93081 1.33817 1.08065 0.91949 1.25883 1.03103 0.94996 0.95457 1.70104 1.37539 1.37019 1.12678 0.85611 0.80091 0.78345 0.77634 1.19625 1.21501 1.18891 1.60664 1.33728 1.32159 1.03985 1.21601 0.96630 0.93077 0.90884 0.90954 1.22443 0.98199 1.01001 1.01817 1.20639 0.93023 0.99471 0.96921 1.19968 0.96588 0.93920 0.96665 1.20982 0.96168 0.95331 0.96389 1.21265 0.93112 1.01744 1.02352 1.17944 0.80340 0.93955 1.03307 1.91440 1.42489 1.84612 1.94884 1.21279 0.99740 0.93828 1.02750 1.21159 0.91031 1.00517 0.98439 0.93641 0.92402 0.93925 0.98712 0.99448 0.93036 0.83798 0.92771 0.90203 0.94455 0.88324 0.90887 0.85450 0.85010 0.83408 0.82811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.38 9.40 71.98 0.68 -3.70 16 2 C 0.10 4.10 2.40 44.91 0.11 4.21 16 3 H 0.02 0.98 7.11 -2.38 -0.02 0.96 16 4 C 0.03 1.47 4.57 29.85 0.14 1.61 16 5 C -0.53 -28.26 8.12 25.60 0.21 -28.06 16 6 H 0.06 3.16 7.49 -2.91 -0.02 3.14 16 7 C 0.00 0.19 5.46 84.66 0.46 0.66 16 8 N -0.93 -56.14 13.29 21.45 0.28 -55.86 16 9 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 12 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 13 N -0.67 -22.98 5.45 -469.48 -2.56 -25.54 16 14 C 0.09 2.29 2.39 44.92 0.11 2.40 16 15 H 0.07 1.88 7.11 -2.39 -0.02 1.86 16 16 C -0.18 -4.41 9.15 71.98 0.66 -3.75 16 17 C -0.06 -1.30 5.03 29.85 0.15 -1.15 16 18 C -0.07 -1.63 4.95 -19.86 -0.10 -1.73 16 19 C -0.07 -1.84 9.32 22.26 0.21 -1.64 16 20 C -0.17 -4.38 10.03 22.31 0.22 -4.16 16 21 C 0.06 1.65 7.30 22.37 0.16 1.81 16 22 F -0.16 -4.25 17.27 44.97 0.78 -3.47 16 23 C -0.16 -3.40 10.03 22.31 0.22 -3.17 16 24 C -0.09 -1.87 9.70 22.26 0.22 -1.65 16 25 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 1.79 7.43 -2.39 -0.02 1.77 16 27 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 28 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 29 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 30 H 0.26 14.92 8.31 -92.70 -0.77 14.14 16 31 H 0.34 13.08 6.95 -89.69 -0.62 12.46 16 32 H 0.05 1.39 8.13 -2.39 -0.02 1.37 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.04 1.10 7.43 -2.39 -0.02 1.09 16 35 H 0.10 1.50 8.08 -2.39 -0.02 1.48 16 36 H 0.07 1.56 8.08 -2.39 -0.02 1.54 16 37 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 38 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 39 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 40 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -61.74 333.76 4.36 -57.38 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.39 Total: 20.64 kcal Atomic # 6 Polarization: -41.77 SS G_CDS: 3.44 Total: -38.33 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -2.27 Total: -81.40 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.78 Total: -3.47 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -61.74 4.36 -57.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695781182.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.313 kcal (2) G-P(sol) polarization free energy of solvation -61.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds