Wall clock time and date at job start Mon Mar 30 2020 06:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47237 * 2 1 4 4 C 1.53002 * 109.47164 * 239.99957 * 2 1 3 5 5 C 1.50699 * 109.47264 * 174.99817 * 4 2 1 6 6 H 1.07995 * 120.00057 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99572 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99568 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00580 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47483 * 89.99826 * 9 7 5 11 11 H 1.48505 * 109.47393 * 210.00091 * 9 7 5 12 12 H 1.48502 * 109.46761 * 329.99790 * 9 7 5 13 13 N 1.46903 * 109.47320 * 120.00121 * 2 1 3 14 14 C 1.46898 * 110.99596 * 274.99462 * 13 2 1 15 15 H 1.09004 * 109.47125 * 35.00926 * 14 13 2 16 16 C 1.52998 * 109.47511 * 275.00101 * 14 13 2 17 17 C 1.53007 * 109.46467 * 154.99918 * 14 13 2 18 18 C 1.50698 * 109.47212 * 295.00063 * 17 14 13 19 19 C 1.38249 * 119.97530 * 270.27897 * 18 17 14 20 20 C 1.38194 * 120.02368 * 180.23999 * 19 18 17 21 21 C 1.38460 * 119.97497 * 359.45988 * 20 19 18 22 22 F 1.35105 * 120.02800 * 180.30394 * 21 20 19 23 23 C 1.38467 * 119.94896 * 0.28520 * 21 20 19 24 24 C 1.38197 * 119.97188 * 359.97438 * 23 21 20 25 25 H 1.08998 * 109.46874 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46907 * 299.99584 * 1 2 3 27 27 H 1.09000 * 109.47105 * 60.00109 * 1 2 3 28 28 H 1.09000 * 109.47173 * 295.00549 * 4 2 1 29 29 H 1.09004 * 109.46682 * 54.99748 * 4 2 1 30 30 H 0.96999 * 119.99949 * 180.02562 * 8 7 5 31 31 H 1.00891 * 110.99943 * 38.95079 * 13 2 1 32 32 H 1.08994 * 109.47146 * 60.00037 * 16 14 13 33 33 H 1.09001 * 109.47160 * 180.02562 * 16 14 13 34 34 H 1.09001 * 109.46929 * 299.99909 * 16 14 13 35 35 H 1.09006 * 109.46646 * 175.00211 * 17 14 13 36 36 H 1.08994 * 109.47142 * 55.00803 * 17 14 13 37 37 H 1.07998 * 119.98587 * 0.02562 * 19 18 17 38 38 H 1.08002 * 120.01531 * 179.74540 * 20 19 18 39 39 H 1.07998 * 120.01314 * 180.02562 * 23 21 20 40 40 H 1.07994 * 119.98607 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3128 6 1 4.0789 -0.0855 -0.5397 7 6 4.2303 -1.1936 -2.3579 8 7 5.5410 -1.1003 -2.4136 9 14 3.3014 -2.1087 -3.6954 10 1 2.9407 -1.1639 -4.7827 11 1 4.1598 -3.1896 -4.2434 12 1 2.0653 -2.7004 -3.1233 13 7 2.0197 -0.6925 1.1994 14 6 2.0826 0.2226 2.3468 15 1 1.2577 0.9329 2.2907 16 6 3.4112 0.9809 2.3222 17 6 1.9772 -0.5797 3.6453 18 6 0.6192 -1.2281 3.7264 19 6 -0.4326 -0.5562 4.3210 20 6 -1.6771 -1.1518 4.4002 21 6 -1.8731 -2.4174 3.8740 22 9 -3.0909 -2.9982 3.9454 23 6 -0.8202 -3.0872 3.2740 24 6 0.4247 -2.4918 3.2006 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.7516 -1.7715 -1.2056 29 1 1.6053 -0.2617 -2.1370 30 1 6.0253 -1.5071 -3.1490 31 1 1.4496 -1.4979 1.4100 32 1 3.4863 1.5524 1.3972 33 1 3.4580 1.6596 3.1738 34 1 4.2360 0.2706 2.3784 35 1 2.1127 0.0875 4.4966 36 1 2.7488 -1.3493 3.6605 37 1 -0.2808 0.4331 4.7267 38 1 -2.4977 -0.6285 4.8684 39 1 -0.9720 -4.0743 2.8628 40 1 1.2460 -3.0138 2.7324 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695781186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:07 Heat of formation + Delta-G solvation = -37.826387 kcal Electronic energy + Delta-G solvation = -20219.996877 eV Core-core repulsion = 17141.337190 eV Total energy + Delta-G solvation = -3078.659687 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.154 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.98258 -39.57814 -37.25143 -34.07977 -32.17767 -31.27259 -30.75819 -28.36585 -27.42868 -26.14885 -23.20276 -22.79294 -21.76488 -20.07902 -19.61463 -17.75677 -16.57063 -16.46496 -15.77427 -15.70758 -15.41748 -14.70300 -14.33856 -13.94625 -13.66987 -13.49339 -13.29772 -12.87913 -12.63479 -12.50626 -12.18022 -11.93744 -11.79797 -11.69751 -11.60025 -11.09948 -11.03994 -10.86216 -10.73177 -10.51174 -10.17450 -9.66056 -9.53247 -9.22277 -8.98967 -8.60022 -8.38562 -7.57985 -5.87280 -3.80391 1.02514 1.10600 3.38136 3.45810 3.46037 3.49384 4.15476 4.57577 4.58150 4.68239 4.71936 4.78208 5.15352 5.20423 5.25968 5.46541 5.52717 5.56559 5.66747 5.78512 5.83095 5.88007 5.91289 5.98904 6.02913 6.07944 6.13952 6.20433 6.36258 6.44800 6.53069 6.55206 6.77087 6.80105 6.90922 7.19913 7.38004 7.86607 7.96788 8.15270 8.77056 9.25028 9.76520 11.26825 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.021770 B = 0.005108 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.882890 B = 5480.690305 C = 6174.350364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.099 3.901 3 H 0.070 0.930 4 C -0.004 4.004 5 C -0.485 4.485 6 H 0.079 0.921 7 C 0.060 3.940 8 N -0.910 5.910 9 Si 0.873 3.127 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.269 1.269 13 N -0.660 5.660 14 C 0.091 3.909 15 H 0.035 0.965 16 C -0.137 4.137 17 C -0.086 4.086 18 C -0.086 4.086 19 C -0.090 4.090 20 C -0.153 4.153 21 C 0.087 3.913 22 F -0.144 7.144 23 C -0.148 4.148 24 C -0.088 4.088 25 H 0.048 0.952 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.014 0.986 29 H 0.010 0.990 30 H 0.259 0.741 31 H 0.330 0.670 32 H 0.061 0.939 33 H 0.044 0.956 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.752 0.433 14.675 19.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.011 4.011 3 H 0.088 0.912 4 C -0.042 4.042 5 C -0.524 4.524 6 H 0.097 0.903 7 C -0.139 4.139 8 N -0.551 5.551 9 Si 0.701 3.299 10 H -0.207 1.207 11 H -0.217 1.217 12 H -0.193 1.193 13 N -0.292 5.292 14 C -0.020 4.020 15 H 0.053 0.947 16 C -0.195 4.195 17 C -0.124 4.124 18 C -0.087 4.087 19 C -0.108 4.108 20 C -0.172 4.172 21 C 0.068 3.932 22 F -0.123 7.123 23 C -0.167 4.167 24 C -0.106 4.106 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.032 0.968 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.150 0.850 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.980 0.436 14.407 18.742 hybrid contribution -1.693 -0.596 -0.657 1.912 sum -13.673 -0.160 13.750 19.392 Atomic orbital electron populations 1.22581 0.99632 1.01083 1.00764 1.21565 0.89505 0.98334 0.91700 0.91180 1.19603 0.97870 0.95312 0.91413 1.21055 0.89467 1.33453 1.08398 0.90318 1.25007 0.94663 0.96373 0.97871 1.69913 1.06404 1.46445 1.32329 0.86901 0.80222 0.80042 0.82732 1.20722 1.21711 1.19345 1.60656 1.57624 1.08564 1.02359 1.21454 0.97333 0.93768 0.89407 0.94695 1.21777 0.97185 0.99622 1.00922 1.20902 0.92966 1.00086 0.98426 1.20108 0.96429 0.94504 0.97638 1.20915 0.91556 0.99717 0.98651 1.21096 0.98912 0.94396 1.02798 1.17731 0.80648 0.92981 1.01884 1.91485 1.41853 1.84327 1.94644 1.21184 0.92621 1.01323 1.01586 1.21115 0.96820 0.94806 0.97898 0.93281 0.94098 0.92596 0.96758 0.97146 0.93170 0.85023 0.92011 0.93748 0.91635 0.90473 0.89596 0.85187 0.85061 0.84737 0.84196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.96 9.15 37.16 0.34 -2.62 16 2 C 0.10 1.91 2.34 -67.71 -0.16 1.75 16 3 H 0.07 1.41 7.11 -51.93 -0.37 1.04 16 4 C 0.00 -0.10 3.72 -27.88 -0.10 -0.21 16 5 C -0.49 -13.67 9.39 -34.44 -0.32 -13.99 16 6 H 0.08 2.39 7.99 -52.49 -0.42 1.97 16 7 C 0.06 1.76 5.47 -17.82 -0.10 1.66 16 8 N -0.91 -28.36 13.96 55.43 0.77 -27.59 16 9 Si 0.87 22.07 27.47 -169.99 -4.67 17.40 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 13 N -0.66 -11.70 5.77 -99.73 -0.58 -12.27 16 14 C 0.09 1.31 2.45 -67.71 -0.17 1.15 16 15 H 0.04 0.50 7.11 -51.93 -0.37 0.13 16 16 C -0.14 -2.09 9.40 37.16 0.35 -1.74 16 17 C -0.09 -1.01 4.98 -27.88 -0.14 -1.14 16 18 C -0.09 -0.99 4.84 -104.62 -0.51 -1.50 16 19 C -0.09 -0.94 9.70 -39.59 -0.38 -1.32 16 20 C -0.15 -1.62 10.03 -39.52 -0.40 -2.01 16 21 C 0.09 1.02 7.30 -39.42 -0.29 0.74 16 22 F -0.14 -1.79 17.27 2.25 0.04 -1.75 16 23 C -0.15 -1.70 10.03 -39.51 -0.40 -2.10 16 24 C -0.09 -1.03 8.03 -39.59 -0.32 -1.35 16 25 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 26 H 0.04 0.60 7.43 -51.93 -0.39 0.22 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 29 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.33 5.43 5.23 -39.30 -0.21 5.23 16 32 H 0.06 1.07 7.43 -51.93 -0.39 0.69 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 36 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 37 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 40 H 0.14 1.60 7.53 -52.49 -0.40 1.20 16 LS Contribution 327.85 15.07 4.94 4.94 Total: -1.00 -30.92 327.85 -8.34 -39.26 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.26 Total: 2.70 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: -2.59 Total: -22.69 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.20 Total: -39.86 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.92 -8.34 -39.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695781186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.433 kcal (2) G-P(sol) polarization free energy of solvation -30.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds