Wall clock time and date at job start Mon Mar 30 2020 06:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47237 * 2 1 4 4 C 1.53002 * 109.47164 * 239.99957 * 2 1 3 5 5 C 1.50699 * 109.47264 * 174.99817 * 4 2 1 6 6 H 1.07995 * 120.00057 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99572 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99568 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00580 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47483 * 89.99826 * 9 7 5 11 11 H 1.48505 * 109.47393 * 210.00091 * 9 7 5 12 12 H 1.48502 * 109.46761 * 329.99790 * 9 7 5 13 13 N 1.46903 * 109.47320 * 120.00121 * 2 1 3 14 14 C 1.46898 * 110.99596 * 274.99462 * 13 2 1 15 15 H 1.09004 * 109.47125 * 35.00926 * 14 13 2 16 16 C 1.52998 * 109.47511 * 275.00101 * 14 13 2 17 17 C 1.53007 * 109.46467 * 154.99918 * 14 13 2 18 18 C 1.50698 * 109.47212 * 295.00063 * 17 14 13 19 19 C 1.38249 * 119.97530 * 270.27897 * 18 17 14 20 20 C 1.38194 * 120.02368 * 180.23999 * 19 18 17 21 21 C 1.38460 * 119.97497 * 359.45988 * 20 19 18 22 22 F 1.35105 * 120.02800 * 180.30394 * 21 20 19 23 23 C 1.38467 * 119.94896 * 0.28520 * 21 20 19 24 24 C 1.38197 * 119.97188 * 359.97438 * 23 21 20 25 25 H 1.08998 * 109.46874 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46907 * 299.99584 * 1 2 3 27 27 H 1.09000 * 109.47105 * 60.00109 * 1 2 3 28 28 H 1.09000 * 109.47173 * 295.00549 * 4 2 1 29 29 H 1.09004 * 109.46682 * 54.99748 * 4 2 1 30 30 H 0.96999 * 119.99949 * 180.02562 * 8 7 5 31 31 H 1.00891 * 110.99943 * 38.95079 * 13 2 1 32 32 H 1.08994 * 109.47146 * 60.00037 * 16 14 13 33 33 H 1.09001 * 109.47160 * 180.02562 * 16 14 13 34 34 H 1.09001 * 109.46929 * 299.99909 * 16 14 13 35 35 H 1.09006 * 109.46646 * 175.00211 * 17 14 13 36 36 H 1.08994 * 109.47142 * 55.00803 * 17 14 13 37 37 H 1.07998 * 119.98587 * 0.02562 * 19 18 17 38 38 H 1.08002 * 120.01531 * 179.74540 * 20 19 18 39 39 H 1.07998 * 120.01314 * 180.02562 * 23 21 20 40 40 H 1.07994 * 119.98607 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3128 6 1 4.0789 -0.0855 -0.5397 7 6 4.2303 -1.1936 -2.3579 8 7 5.5410 -1.1003 -2.4136 9 14 3.3014 -2.1087 -3.6954 10 1 2.9407 -1.1639 -4.7827 11 1 4.1598 -3.1896 -4.2434 12 1 2.0653 -2.7004 -3.1233 13 7 2.0197 -0.6925 1.1994 14 6 2.0826 0.2226 2.3468 15 1 1.2577 0.9329 2.2907 16 6 3.4112 0.9809 2.3222 17 6 1.9772 -0.5797 3.6453 18 6 0.6192 -1.2281 3.7264 19 6 -0.4326 -0.5562 4.3210 20 6 -1.6771 -1.1518 4.4002 21 6 -1.8731 -2.4174 3.8740 22 9 -3.0909 -2.9982 3.9454 23 6 -0.8202 -3.0872 3.2740 24 6 0.4247 -2.4918 3.2006 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.7516 -1.7715 -1.2056 29 1 1.6053 -0.2617 -2.1370 30 1 6.0253 -1.5071 -3.1490 31 1 1.4496 -1.4979 1.4100 32 1 3.4863 1.5524 1.3972 33 1 3.4580 1.6596 3.1738 34 1 4.2360 0.2706 2.3784 35 1 2.1127 0.0875 4.4966 36 1 2.7488 -1.3493 3.6605 37 1 -0.2808 0.4331 4.7267 38 1 -2.4977 -0.6285 4.8684 39 1 -0.9720 -4.0743 2.8628 40 1 1.2460 -3.0138 2.7324 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695781186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:06 Heat of formation + Delta-G solvation = -55.471238 kcal Electronic energy + Delta-G solvation = -20220.762015 eV Core-core repulsion = 17141.337190 eV Total energy + Delta-G solvation = -3079.424825 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.154 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.88233 -40.50091 -38.53522 -35.56110 -34.14570 -32.09903 -31.85066 -30.14027 -28.87174 -27.13891 -24.69052 -24.01449 -22.77552 -21.30780 -21.14734 -18.73608 -18.61734 -17.40801 -16.82295 -16.65054 -16.55059 -16.34285 -15.68262 -15.24294 -14.85207 -14.55280 -14.43175 -14.24766 -14.07660 -13.87445 -13.62315 -13.39430 -13.14686 -12.99176 -12.71502 -12.58150 -12.34413 -12.07475 -12.03064 -11.82383 -11.68542 -11.52969 -11.34661 -11.08087 -10.64066 -10.04945 -9.48553 -8.93759 -8.13656 -6.11188 0.16088 0.28880 1.37915 1.40032 1.50845 2.44832 2.61151 3.19640 3.31110 3.46543 3.78277 3.80397 3.98890 4.10719 4.25803 4.32153 4.36932 4.40911 4.48145 4.58151 4.63561 4.81342 4.87673 5.00087 5.03044 5.04480 5.08680 5.13998 5.18190 5.19631 5.27126 5.31626 5.34297 5.55000 5.56339 5.64605 5.80340 5.95612 6.43045 6.58680 6.83222 6.97428 7.49132 9.03628 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.021770 B = 0.005108 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.882890 B = 5480.690305 C = 6174.350364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.103 3.897 3 H 0.056 0.944 4 C -0.003 4.003 5 C -0.483 4.483 6 H 0.040 0.960 7 C -0.004 4.004 8 N -0.959 5.959 9 Si 0.941 3.059 10 H -0.272 1.272 11 H -0.291 1.291 12 H -0.251 1.251 13 N -0.682 5.682 14 C 0.093 3.907 15 H 0.046 0.954 16 C -0.134 4.134 17 C -0.077 4.077 18 C -0.092 4.092 19 C -0.086 4.086 20 C -0.151 4.151 21 C 0.071 3.929 22 F -0.151 7.151 23 C -0.155 4.155 24 C -0.099 4.099 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.013 0.987 29 H 0.014 0.986 30 H 0.259 0.741 31 H 0.337 0.663 32 H 0.030 0.970 33 H 0.078 0.922 34 H 0.042 0.958 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.142 0.858 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.102 0.676 15.546 21.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.007 4.007 3 H 0.074 0.926 4 C -0.041 4.041 5 C -0.521 4.521 6 H 0.059 0.941 7 C -0.198 4.198 8 N -0.602 5.602 9 Si 0.766 3.234 10 H -0.197 1.197 11 H -0.217 1.217 12 H -0.175 1.175 13 N -0.316 5.316 14 C -0.016 4.016 15 H 0.064 0.936 16 C -0.192 4.192 17 C -0.114 4.114 18 C -0.093 4.093 19 C -0.104 4.104 20 C -0.170 4.170 21 C 0.052 3.948 22 F -0.130 7.130 23 C -0.174 4.174 24 C -0.117 4.117 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.031 0.969 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.158 0.842 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.122 0.878 36 H 0.095 0.905 37 H 0.173 0.827 38 H 0.170 0.830 39 H 0.160 0.840 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.354 0.681 15.294 20.986 hybrid contribution -0.900 -0.623 -0.846 1.384 sum -15.254 0.059 14.448 21.011 Atomic orbital electron populations 1.22419 0.96681 1.01678 1.02047 1.21319 0.91723 0.96908 0.90702 0.92557 1.19577 0.94740 0.95787 0.94021 1.21314 0.91906 1.31959 1.06933 0.94121 1.25903 0.95461 0.97732 1.00731 1.70078 1.08352 1.48250 1.33540 0.85799 0.79261 0.78710 0.79606 1.19724 1.21712 1.17528 1.60519 1.58232 1.09659 1.03156 1.21465 0.96840 0.93706 0.89602 0.93640 1.21754 0.97148 0.99482 1.00794 1.20803 0.93073 0.99970 0.97604 1.20127 0.96547 0.94489 0.98115 1.21179 0.90879 1.00559 0.97802 1.21363 0.99692 0.93844 1.02064 1.17963 0.80468 0.93741 1.02615 1.91467 1.42218 1.84551 1.94764 1.21299 0.92569 1.01808 1.01704 1.21150 0.96827 0.95319 0.98421 0.92974 0.92153 0.91984 0.96916 0.96752 0.93208 0.84232 0.95093 0.90309 0.93895 0.87787 0.90535 0.82667 0.83004 0.84023 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.08 9.15 71.98 0.66 -4.43 16 2 C 0.10 3.92 2.34 44.91 0.11 4.03 16 3 H 0.06 2.27 7.11 -2.38 -0.02 2.25 16 4 C 0.00 -0.16 3.72 29.85 0.11 -0.05 16 5 C -0.48 -27.81 9.39 25.60 0.24 -27.57 16 6 H 0.04 2.59 7.99 -2.91 -0.02 2.57 16 7 C 0.00 -0.23 5.47 84.65 0.46 0.24 16 8 N -0.96 -61.51 13.96 21.45 0.30 -61.21 16 9 Si 0.94 45.59 27.47 68.60 1.88 47.47 16 10 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 12 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 13 N -0.68 -23.84 5.77 -469.45 -2.71 -26.55 16 14 C 0.09 2.58 2.45 44.92 0.11 2.69 16 15 H 0.05 1.18 7.11 -2.38 -0.02 1.17 16 16 C -0.13 -4.06 9.40 71.98 0.68 -3.39 16 17 C -0.08 -1.63 4.98 29.85 0.15 -1.48 16 18 C -0.09 -1.89 4.84 -19.86 -0.10 -1.99 16 19 C -0.09 -1.49 9.70 22.26 0.22 -1.27 16 20 C -0.15 -2.72 10.03 22.31 0.22 -2.50 16 21 C 0.07 1.54 7.30 22.38 0.16 1.70 16 22 F -0.15 -3.52 17.27 44.97 0.78 -2.74 16 23 C -0.16 -3.34 10.03 22.31 0.22 -3.11 16 24 C -0.10 -2.18 8.03 22.26 0.18 -2.00 16 25 H 0.05 1.53 8.13 -2.39 -0.02 1.52 16 26 H 0.06 1.58 7.43 -2.39 -0.02 1.56 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.01 0.59 7.20 -2.39 -0.02 0.58 16 29 H 0.01 0.66 7.57 -2.38 -0.02 0.64 16 30 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 31 H 0.34 10.77 5.23 -89.70 -0.47 10.30 16 32 H 0.03 1.10 7.43 -2.39 -0.02 1.08 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.10 1.66 8.09 -2.38 -0.02 1.64 16 36 H 0.08 1.78 8.08 -2.39 -0.02 1.76 16 37 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 38 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 39 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 40 H 0.14 3.03 7.53 -2.91 -0.02 3.01 16 Total: -1.00 -67.82 327.85 4.16 -63.66 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.49 Total: 18.50 kcal Atomic # 6 Polarization: -42.55 SS G_CDS: 3.42 Total: -39.13 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -2.41 Total: -87.76 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.78 Total: -2.74 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.88 Total: 47.47 kcal Total: -67.82 4.16 -63.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695781186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.189 kcal (2) G-P(sol) polarization free energy of solvation -67.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds