Wall clock time and date at job start Mon Mar 30 2020 06:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47238 * 2 1 4 4 C 1.53002 * 109.47098 * 239.99960 * 2 1 3 5 5 C 1.50704 * 109.47209 * 65.00250 * 4 2 1 6 6 H 1.08001 * 119.99609 * 0.02562 * 5 4 2 7 7 C 1.37870 * 119.99955 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00564 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00023 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47050 * 59.99427 * 9 7 5 11 11 H 1.48498 * 109.47326 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46766 * 299.99791 * 9 7 5 13 13 C 1.50703 * 109.46782 * 120.00291 * 2 1 3 14 14 N 1.31131 * 126.54920 * 240.24872 * 13 2 1 15 15 C 1.34495 * 105.61604 * 180.12637 * 14 13 2 16 16 C 1.50693 * 126.29013 * 179.90677 * 15 14 13 17 17 H 1.08998 * 110.36959 * 342.35966 * 16 15 14 18 18 C 1.54382 * 110.41297 * 104.70878 * 16 15 14 19 19 C 1.54257 * 105.06052 * 142.75009 * 18 16 15 20 20 C 1.54379 * 105.06256 * 0.02562 * 19 18 16 21 21 N 1.48562 * 104.69842 * 336.08765 * 20 19 18 22 22 C 1.46894 * 111.00344 * 159.09785 * 21 20 19 23 23 N 1.29947 * 107.42212 * 359.63763 * 15 14 13 24 24 O 1.21300 * 110.25236 * 0.23409 * 23 15 14 25 25 H 1.09005 * 109.47271 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47271 * 300.00309 * 1 2 3 27 27 H 1.09005 * 109.46720 * 60.00131 * 1 2 3 28 28 H 1.09002 * 109.47374 * 185.00455 * 4 2 1 29 29 H 1.08997 * 109.47141 * 304.99975 * 4 2 1 30 30 H 0.96998 * 120.00780 * 180.02562 * 8 7 5 31 31 H 1.08997 * 110.32536 * 23.85631 * 18 16 15 32 32 H 1.09004 * 110.32474 * 261.64856 * 18 16 15 33 33 H 1.08998 * 110.32238 * 241.10511 * 19 18 16 34 34 H 1.09002 * 110.32308 * 118.90057 * 19 18 16 35 35 H 1.09002 * 110.41258 * 94.92615 * 20 19 18 36 36 H 1.09002 * 110.41328 * 217.24846 * 20 19 18 37 37 H 1.09007 * 109.47069 * 59.87301 * 22 21 20 38 38 H 1.08995 * 109.47381 * 179.87413 * 22 21 20 39 39 H 1.09000 * 109.47076 * 299.87817 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6414 0.0571 -2.4766 6 1 1.0807 0.9746 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 2.6755 -1.5193 -3.8513 9 14 1.4989 0.5629 -5.2497 10 1 2.0920 1.9228 -5.1871 11 1 1.9938 -0.1372 -6.4621 12 1 0.0190 0.6705 -5.3090 13 6 2.0322 -0.7105 1.2305 14 7 2.7854 -0.1995 2.1745 15 6 2.9815 -1.1936 3.0590 16 6 3.7881 -1.1110 4.3292 17 1 4.4508 -0.2461 4.3023 18 6 2.8541 -1.0355 5.5561 19 6 3.5579 -1.8680 6.6475 20 6 4.8583 -2.3759 5.9885 21 7 4.5735 -2.3590 4.5305 22 6 5.8184 -2.3331 3.7512 23 7 2.3431 -2.2367 2.6198 24 8 1.7911 -1.9802 1.5706 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 3.1263 -0.7996 -1.2056 29 1 1.6054 -1.7198 -1.2952 30 1 2.9228 -1.8423 -4.7318 31 1 1.8818 -1.4672 5.3189 32 1 2.7407 -0.0017 5.8826 33 1 2.9311 -2.7083 6.9459 34 1 3.7900 -1.2428 7.5098 35 1 5.6883 -1.7088 6.2215 36 1 5.0819 -3.3897 6.3205 37 1 6.4109 -3.2182 3.9832 38 1 5.5810 -2.3234 2.6874 39 1 6.3872 -1.4385 4.0047 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700212196.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:56 Heat of formation + Delta-G solvation = 37.854047 kcal Electronic energy + Delta-G solvation = -20145.110711 eV Core-core repulsion = 17089.652735 eV Total energy + Delta-G solvation = -3055.457975 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.56262 -40.15162 -37.53219 -36.53673 -34.51378 -33.27818 -32.53391 -30.11443 -28.99682 -26.78816 -26.28458 -24.92759 -24.50884 -22.56147 -21.92646 -20.59527 -19.01857 -18.64962 -18.32113 -16.94926 -16.86969 -16.50348 -16.16152 -15.44531 -15.09880 -14.84723 -14.46691 -14.42036 -13.84081 -13.60920 -13.44022 -13.25580 -13.06975 -12.90770 -12.79873 -12.62455 -12.57927 -12.35096 -12.28600 -12.17652 -12.08558 -11.87371 -11.54311 -11.52608 -11.27080 -10.74753 -10.53749 -9.67298 -8.17352 -6.28635 0.15997 1.17025 1.47103 1.49652 1.57025 1.89221 2.36250 2.46912 2.91880 3.17744 3.19517 3.52104 3.69346 3.86372 4.06872 4.16337 4.25652 4.28458 4.33479 4.35542 4.47479 4.55177 4.65415 4.78072 4.81440 4.83262 4.88053 4.96791 5.04248 5.04465 5.09036 5.18717 5.36310 5.40398 5.58101 5.65500 5.79750 5.86989 6.16269 6.85289 7.18042 7.40860 8.95061 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.038429 B = 0.003972 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.438729 B = 7048.340208 C = 7442.670433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.009 3.991 3 H 0.113 0.887 4 C 0.037 3.963 5 C -0.530 4.530 6 H 0.080 0.920 7 C 0.001 3.999 8 N -0.936 5.936 9 Si 0.967 3.033 10 H -0.266 1.266 11 H -0.291 1.291 12 H -0.261 1.261 13 C 0.209 3.791 14 N -0.510 5.510 15 C 0.177 3.823 16 C 0.150 3.850 17 H 0.089 0.911 18 C -0.111 4.111 19 C -0.114 4.114 20 C 0.034 3.966 21 N -0.528 5.528 22 C 0.018 3.982 23 N -0.386 5.386 24 O 0.056 5.944 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.085 0.915 28 H -0.015 1.015 29 H 0.003 0.997 30 H 0.263 0.737 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.034 0.966 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.665 2.309 19.657 19.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.011 4.011 3 H 0.131 0.869 4 C -0.001 4.001 5 C -0.568 4.568 6 H 0.098 0.902 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.791 3.209 10 H -0.191 1.191 11 H -0.217 1.217 12 H -0.186 1.186 13 C -0.010 4.010 14 N -0.244 5.244 15 C -0.097 4.097 16 C 0.040 3.960 17 H 0.107 0.893 18 C -0.150 4.150 19 C -0.152 4.152 20 C -0.093 4.093 21 N -0.254 5.254 22 C -0.131 4.131 23 N -0.098 5.098 24 O 0.003 5.997 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.003 0.997 29 H 0.022 0.978 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.120 0.880 35 H 0.084 0.916 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.053 0.947 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.678 1.253 19.985 20.095 hybrid contribution 0.549 0.648 -1.340 1.586 sum 2.226 1.901 18.646 18.874 Atomic orbital electron populations 1.21732 0.90770 1.02775 1.03299 1.20136 0.98320 0.98254 0.84384 0.86950 1.19021 0.94412 0.95419 0.91214 1.21478 1.35387 1.09067 0.90823 0.90233 1.25970 0.94939 0.95938 1.02850 1.70115 1.39871 1.23023 1.24587 0.85469 0.79224 0.78577 0.77607 1.19091 1.21660 1.18588 1.29517 0.92100 0.81919 0.97492 1.71893 1.18448 1.30343 1.03761 1.25980 0.99631 0.84684 0.99430 1.21026 0.94142 0.93818 0.87058 0.89288 1.22346 0.97624 1.02444 0.92578 1.22309 0.95498 0.99946 0.97398 1.23240 0.97968 1.02923 0.85174 1.65191 1.18486 1.33679 1.07994 1.22481 0.90881 1.02500 0.97230 1.74612 1.13216 1.24045 0.97915 1.85306 1.54810 1.30189 1.29423 0.92714 0.91217 0.89629 0.99666 0.97834 0.92854 0.92539 0.88471 0.90516 0.87987 0.91646 0.88595 0.89066 0.94708 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.31 8.98 71.98 0.65 -3.66 16 2 C 0.01 0.38 2.81 -11.54 -0.03 0.35 16 3 H 0.11 4.31 8.14 -2.39 -0.02 4.29 16 4 C 0.04 1.91 4.43 29.85 0.13 2.04 16 5 C -0.53 -28.02 8.41 25.60 0.22 -27.81 16 6 H 0.08 3.84 7.06 -2.91 -0.02 3.82 16 7 C 0.00 0.05 5.46 84.65 0.46 0.52 16 8 N -0.94 -56.12 13.29 21.44 0.28 -55.84 16 9 Si 0.97 42.47 29.54 68.60 2.03 44.49 16 10 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 11 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 13 C 0.21 8.47 7.02 88.38 0.62 9.09 16 14 N -0.51 -19.82 11.55 -303.19 -3.50 -23.32 16 15 C 0.18 6.35 6.81 138.46 0.94 7.29 16 16 C 0.15 4.02 2.83 44.26 0.13 4.14 16 17 H 0.09 2.23 7.91 -2.39 -0.02 2.21 16 18 C -0.11 -2.28 6.54 31.49 0.21 -2.08 16 19 C -0.11 -1.66 7.00 31.49 0.22 -1.44 16 20 C 0.03 0.55 6.48 86.45 0.56 1.11 16 21 N -0.53 -13.33 5.33 -886.32 -4.72 -18.05 16 22 C 0.02 0.42 9.43 127.69 1.20 1.63 16 23 N -0.39 -15.44 12.14 -60.31 -0.73 -16.17 16 24 O 0.06 2.37 11.31 74.85 0.85 3.21 16 25 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 26 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.08 2.87 6.95 -2.38 -0.02 2.85 16 28 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 29 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 31 H 0.06 1.38 7.85 -2.39 -0.02 1.37 16 32 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 0.86 7.97 -2.39 -0.02 0.84 16 36 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.03 1.05 8.07 -2.39 -0.02 1.03 16 39 H 0.05 0.96 7.98 -2.39 -0.02 0.95 16 Total: -1.00 -66.39 324.18 0.53 -65.86 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 1.02 Total: 8.64 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 5.30 Total: -8.83 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -8.67 Total: -113.38 kcal Atomic # 8 Polarization: 2.37 SS G_CDS: 0.85 Total: 3.21 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -66.39 0.53 -65.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700212196.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.715 kcal (2) G-P(sol) polarization free energy of solvation -66.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds