Wall clock time and date at job start Mon Mar 30 2020 06:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.46765 * 2 1 4 4 C 1.53002 * 109.47128 * 119.99542 * 2 1 3 5 5 C 1.50701 * 109.47158 * 295.00443 * 4 2 1 6 6 H 1.07998 * 119.99926 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99888 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00021 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99910 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47178 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46877 * 119.99930 * 9 7 5 12 12 H 1.48503 * 109.47291 * 239.99870 * 9 7 5 13 13 C 1.50701 * 109.46852 * 239.99546 * 2 1 3 14 14 N 1.31127 * 126.54773 * 119.71517 * 13 2 1 15 15 C 1.34490 * 105.61579 * 179.91367 * 14 13 2 16 16 C 1.50696 * 126.29184 * 180.12337 * 15 14 13 17 17 H 1.08998 * 109.88510 * 179.48213 * 16 15 14 18 18 C 1.54326 * 109.88604 * 58.45406 * 16 15 14 19 19 C 1.55394 * 102.90171 * 218.40770 * 18 16 15 20 20 C 1.54911 * 101.74130 * 35.48100 * 19 18 16 21 21 N 1.47445 * 109.89003 * 300.52269 * 16 15 14 22 22 C 1.46902 * 110.99848 * 356.14100 * 21 16 15 23 23 N 1.29953 * 107.42219 * 0.34941 * 15 14 13 24 24 O 1.21298 * 110.24930 * 359.77348 * 23 15 14 25 25 H 1.09003 * 109.47106 * 299.99973 * 1 2 3 26 26 H 1.08996 * 109.47514 * 60.00645 * 1 2 3 27 27 H 1.09003 * 109.47334 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46912 * 175.00069 * 4 2 1 29 29 H 1.09007 * 109.46740 * 54.99714 * 4 2 1 30 30 H 0.97007 * 119.99988 * 179.97438 * 8 7 5 31 31 H 1.08991 * 110.70323 * 336.69491 * 18 16 15 32 32 H 1.09005 * 110.70542 * 99.93213 * 18 16 15 33 33 H 1.09004 * 110.87244 * 277.39747 * 19 18 16 34 34 H 1.08997 * 111.05861 * 153.65011 * 19 18 16 35 35 H 1.09002 * 110.37386 * 204.19020 * 20 19 18 36 36 H 1.08997 * 110.37170 * 81.85012 * 20 19 18 37 37 H 1.09002 * 109.46680 * 67.34005 * 22 21 16 38 38 H 1.08999 * 109.46914 * 187.34012 * 22 21 16 39 39 H 1.08998 * 109.47011 * 307.34255 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0806 0.9747 2.3756 7 6 1.9932 -0.4015 3.7283 8 7 2.6764 -1.5185 3.8512 9 14 1.4995 0.5637 5.2496 10 1 0.7430 1.7752 4.8433 11 1 0.6458 -0.2853 6.1189 12 1 2.7178 0.9686 5.9959 13 6 2.0323 -0.7105 -1.2304 14 7 2.7849 -0.1994 -2.1748 15 6 2.9806 -1.1932 -3.0595 16 6 3.7869 -1.1106 -4.3299 17 1 3.7752 -2.0739 -4.8398 18 6 5.2403 -0.7070 -4.0038 19 6 5.6059 0.2483 -5.1736 20 6 4.2582 0.9699 -5.4243 21 7 3.2283 -0.0693 -5.2117 22 6 2.0075 0.5095 -4.6351 23 7 2.3425 -2.2366 -2.6200 24 8 1.7912 -1.9802 -1.5704 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1263 -0.7993 1.2056 29 1 1.6053 -1.7197 1.2953 30 1 2.9243 -1.8410 4.7319 31 1 5.2899 -0.1832 -3.0493 32 1 5.8913 -1.5813 -3.9991 33 1 5.9163 -0.3158 -6.0532 34 1 6.3782 0.9567 -4.8740 35 1 4.2132 1.3453 -6.4467 36 1 4.1266 1.7856 -4.7135 37 1 2.2609 1.0690 -3.7346 38 1 1.5449 1.1787 -5.3606 39 1 1.3108 -0.2897 -4.3822 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700212200.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:00 Heat of formation + Delta-G solvation = 66.416241 kcal Electronic energy + Delta-G solvation = -20514.411215 eV Core-core repulsion = 17460.191789 eV Total energy + Delta-G solvation = -3054.219426 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.21546 -39.38261 -35.91776 -34.99674 -32.64289 -32.17886 -31.13664 -29.08462 -27.17755 -25.75100 -24.63057 -23.81538 -22.66352 -21.37900 -20.98211 -19.27136 -17.64660 -16.83587 -16.59274 -16.19422 -15.68357 -14.70921 -14.55571 -14.37949 -13.86706 -13.59383 -13.28634 -12.79878 -12.66030 -12.42836 -12.01153 -11.81350 -11.64184 -11.55781 -11.37823 -11.30230 -11.06180 -11.01165 -10.89018 -10.80595 -10.58552 -10.53337 -10.22008 -9.96701 -9.30651 -9.25038 -8.51557 -8.48190 -6.11886 -4.16062 1.57209 2.50076 3.25563 3.31953 3.34738 3.37000 3.75877 3.90136 4.26670 4.37895 4.51967 4.55663 4.95628 5.23290 5.24738 5.28841 5.35820 5.42323 5.54738 5.62317 5.67728 5.69566 5.78963 5.79110 5.88620 5.90950 6.01200 6.10446 6.24061 6.30925 6.51708 6.63110 6.71648 6.78744 6.83184 7.44134 7.52208 7.83430 8.19284 8.55435 8.88511 9.48759 10.99430 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.031696 B = 0.004323 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.192238 B = 6475.084486 C = 6603.377094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.001 4.001 3 H 0.105 0.895 4 C 0.029 3.971 5 C -0.521 4.521 6 H 0.063 0.937 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.895 3.105 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.218 3.782 14 N -0.498 5.498 15 C 0.150 3.850 16 C 0.165 3.835 17 H 0.108 0.892 18 C -0.133 4.133 19 C -0.125 4.125 20 C 0.039 3.961 21 N -0.516 5.516 22 C 0.011 3.989 23 N -0.391 5.391 24 O 0.076 5.924 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.058 0.942 28 H 0.021 0.979 29 H 0.029 0.971 30 H 0.262 0.738 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.785 3.805 -15.767 16.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.021 4.021 3 H 0.123 0.877 4 C -0.009 4.009 5 C -0.560 4.560 6 H 0.081 0.919 7 C -0.142 4.142 8 N -0.529 5.529 9 Si 0.722 3.278 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.210 1.210 13 C -0.001 4.001 14 N -0.232 5.232 15 C -0.124 4.124 16 C 0.055 3.945 17 H 0.126 0.874 18 C -0.173 4.173 19 C -0.163 4.163 20 C -0.089 4.089 21 N -0.240 5.240 22 C -0.138 4.138 23 N -0.100 5.100 24 O 0.020 5.980 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.040 0.960 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.921 3.011 -16.755 17.131 hybrid contribution -0.082 0.702 1.862 1.992 sum 1.839 3.713 -14.893 15.458 Atomic orbital electron populations 1.21781 0.93045 1.02554 1.01929 1.20346 0.96523 0.98774 0.86484 0.87746 1.19241 0.96809 0.96085 0.88749 1.21086 1.35885 1.08668 0.90313 0.91907 1.25001 0.94936 0.95014 0.99244 1.69975 1.38213 1.21001 1.23735 0.86491 0.78334 0.80036 0.82893 1.19564 1.20921 1.20995 1.29628 0.91787 0.81603 0.97071 1.71932 1.18725 1.29301 1.03215 1.26033 1.00634 0.85993 0.99706 1.20875 0.91386 0.98262 0.83941 0.87400 1.22890 0.94002 1.00403 0.99968 1.22723 0.97080 0.98328 0.98215 1.23141 0.90300 0.93859 1.01584 1.64000 1.05419 1.11779 1.42820 1.22788 0.91882 0.99570 0.99511 1.74594 1.12904 1.23998 0.98546 1.85277 1.54144 1.30060 1.28526 0.89639 0.94124 0.92308 0.96049 0.95275 0.92811 0.90033 0.90130 0.90485 0.90342 0.89924 0.92815 0.91902 0.91550 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.99 37.16 0.33 -1.95 16 2 C 0.00 -0.02 2.81 -91.77 -0.26 -0.27 16 3 H 0.10 1.97 8.14 -51.93 -0.42 1.54 16 4 C 0.03 0.70 4.43 -27.88 -0.12 0.58 16 5 C -0.52 -13.52 8.41 -34.44 -0.29 -13.81 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 9 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.22 4.14 7.02 -13.06 -0.09 4.05 16 14 N -0.50 -8.99 9.02 -9.87 -0.09 -9.08 16 15 C 0.15 2.56 4.74 -156.37 -0.74 1.82 16 16 C 0.17 2.29 3.95 -67.87 -0.27 2.02 16 17 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 18 C -0.13 -1.59 6.48 -24.77 -0.16 -1.75 16 19 C -0.13 -1.18 7.08 -24.45 -0.17 -1.36 16 20 C 0.04 0.41 6.73 -2.30 -0.02 0.40 16 21 N -0.52 -6.69 5.44 -232.94 -1.27 -7.95 16 22 C 0.01 0.15 8.27 60.07 0.50 0.64 16 23 N -0.39 -7.32 12.16 30.90 0.38 -6.95 16 24 O 0.08 1.49 11.31 18.12 0.20 1.70 16 25 H 0.08 1.47 6.95 -51.93 -0.36 1.11 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.08 1.13 7.70 -51.93 -0.40 0.73 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.60 7.67 -51.93 -0.40 0.21 16 37 H 0.06 0.94 5.89 -51.93 -0.31 0.64 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.86 7.11 -51.93 -0.37 0.49 16 LS Contribution 316.69 15.07 4.77 4.77 Total: -1.00 -28.76 316.69 -7.67 -36.43 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.99 Total: -1.40 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -1.39 Total: -8.10 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: -0.25 Total: -48.94 kcal Atomic # 8 Polarization: 1.49 SS G_CDS: 0.20 Total: 1.70 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.76 -7.67 -36.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700212200.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.845 kcal (2) G-P(sol) polarization free energy of solvation -28.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds