Wall clock time and date at job start Mon Mar 30 2020 06:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.46765 * 2 1 4 4 C 1.53002 * 109.47128 * 119.99542 * 2 1 3 5 5 C 1.50701 * 109.47158 * 295.00443 * 4 2 1 6 6 H 1.07998 * 119.99926 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99888 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00021 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99910 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47178 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46877 * 119.99930 * 9 7 5 12 12 H 1.48503 * 109.47291 * 239.99870 * 9 7 5 13 13 C 1.50701 * 109.46852 * 239.99546 * 2 1 3 14 14 N 1.31127 * 126.54773 * 119.71517 * 13 2 1 15 15 C 1.34490 * 105.61579 * 179.91367 * 14 13 2 16 16 C 1.50696 * 126.29184 * 180.12337 * 15 14 13 17 17 H 1.08998 * 109.88510 * 179.48213 * 16 15 14 18 18 C 1.54326 * 109.88604 * 58.45406 * 16 15 14 19 19 C 1.55394 * 102.90171 * 218.40770 * 18 16 15 20 20 C 1.54911 * 101.74130 * 35.48100 * 19 18 16 21 21 N 1.47445 * 109.89003 * 300.52269 * 16 15 14 22 22 C 1.46902 * 110.99848 * 356.14100 * 21 16 15 23 23 N 1.29953 * 107.42219 * 0.34941 * 15 14 13 24 24 O 1.21298 * 110.24930 * 359.77348 * 23 15 14 25 25 H 1.09003 * 109.47106 * 299.99973 * 1 2 3 26 26 H 1.08996 * 109.47514 * 60.00645 * 1 2 3 27 27 H 1.09003 * 109.47334 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46912 * 175.00069 * 4 2 1 29 29 H 1.09007 * 109.46740 * 54.99714 * 4 2 1 30 30 H 0.97007 * 119.99988 * 179.97438 * 8 7 5 31 31 H 1.08991 * 110.70323 * 336.69491 * 18 16 15 32 32 H 1.09005 * 110.70542 * 99.93213 * 18 16 15 33 33 H 1.09004 * 110.87244 * 277.39747 * 19 18 16 34 34 H 1.08997 * 111.05861 * 153.65011 * 19 18 16 35 35 H 1.09002 * 110.37386 * 204.19020 * 20 19 18 36 36 H 1.08997 * 110.37170 * 81.85012 * 20 19 18 37 37 H 1.09002 * 109.46680 * 67.34005 * 22 21 16 38 38 H 1.08999 * 109.46914 * 187.34012 * 22 21 16 39 39 H 1.08998 * 109.47011 * 307.34255 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0806 0.9747 2.3756 7 6 1.9932 -0.4015 3.7283 8 7 2.6764 -1.5185 3.8512 9 14 1.4995 0.5637 5.2496 10 1 0.7430 1.7752 4.8433 11 1 0.6458 -0.2853 6.1189 12 1 2.7178 0.9686 5.9959 13 6 2.0323 -0.7105 -1.2304 14 7 2.7849 -0.1994 -2.1748 15 6 2.9806 -1.1932 -3.0595 16 6 3.7869 -1.1106 -4.3299 17 1 3.7752 -2.0739 -4.8398 18 6 5.2403 -0.7070 -4.0038 19 6 5.6059 0.2483 -5.1736 20 6 4.2582 0.9699 -5.4243 21 7 3.2283 -0.0693 -5.2117 22 6 2.0075 0.5095 -4.6351 23 7 2.3425 -2.2366 -2.6200 24 8 1.7912 -1.9802 -1.5704 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1263 -0.7993 1.2056 29 1 1.6053 -1.7197 1.2953 30 1 2.9243 -1.8410 4.7319 31 1 5.2899 -0.1832 -3.0493 32 1 5.8913 -1.5813 -3.9991 33 1 5.9163 -0.3158 -6.0532 34 1 6.3782 0.9567 -4.8740 35 1 4.2132 1.3453 -6.4467 36 1 4.1266 1.7856 -4.7135 37 1 2.2609 1.0690 -3.7346 38 1 1.5449 1.1787 -5.3606 39 1 1.3108 -0.2897 -4.3822 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700212200.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:00 Heat of formation + Delta-G solvation = 46.886660 kcal Electronic energy + Delta-G solvation = -20515.258081 eV Core-core repulsion = 17460.191789 eV Total energy + Delta-G solvation = -3055.066292 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.67194 -40.40803 -37.55743 -36.43070 -34.54775 -33.14399 -32.66229 -30.17979 -29.02349 -26.81129 -26.24339 -25.15760 -24.36363 -22.36040 -22.23508 -20.64831 -19.11703 -18.65203 -18.14608 -17.25713 -16.78039 -16.52078 -16.13691 -15.54265 -15.16475 -14.79399 -14.50152 -14.42420 -13.90112 -13.80348 -13.67020 -13.08451 -12.98636 -12.81649 -12.70256 -12.57638 -12.54106 -12.40530 -12.26619 -12.10893 -11.93816 -11.92846 -11.71364 -11.61674 -11.25297 -10.88475 -10.57274 -9.55961 -8.19334 -6.30160 0.08124 1.09232 1.45132 1.46439 1.58699 1.83220 2.40329 2.49326 2.84977 2.99069 3.16474 3.50546 3.65252 3.98764 4.05351 4.14410 4.23576 4.25443 4.30059 4.44717 4.48458 4.56124 4.71130 4.74145 4.82437 4.87445 4.93406 5.00402 5.02276 5.03955 5.06720 5.24449 5.34100 5.38921 5.55943 5.69172 5.78442 5.84984 6.14689 6.84200 7.07885 7.39535 8.93450 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.031696 B = 0.004323 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.192238 B = 6475.084486 C = 6603.377094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.010 3.990 3 H 0.112 0.888 4 C 0.037 3.963 5 C -0.528 4.528 6 H 0.079 0.921 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.965 3.035 10 H -0.254 1.254 11 H -0.282 1.282 12 H -0.285 1.285 13 C 0.210 3.790 14 N -0.496 5.496 15 C 0.161 3.839 16 C 0.159 3.841 17 H 0.115 0.885 18 C -0.133 4.133 19 C -0.114 4.114 20 C 0.035 3.965 21 N -0.516 5.516 22 C 0.017 3.983 23 N -0.407 5.407 24 O 0.057 5.943 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.053 0.947 28 H -0.013 1.013 29 H 0.003 0.997 30 H 0.263 0.737 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.045 0.955 37 H 0.047 0.953 38 H 0.087 0.913 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.740 5.504 -17.056 18.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.010 4.010 3 H 0.130 0.870 4 C -0.001 4.001 5 C -0.566 4.566 6 H 0.097 0.903 7 C -0.196 4.196 8 N -0.576 5.576 9 Si 0.790 3.210 10 H -0.177 1.177 11 H -0.208 1.208 12 H -0.211 1.211 13 C -0.009 4.009 14 N -0.231 5.231 15 C -0.113 4.113 16 C 0.049 3.951 17 H 0.133 0.867 18 C -0.173 4.173 19 C -0.152 4.152 20 C -0.092 4.092 21 N -0.241 5.241 22 C -0.131 4.131 23 N -0.121 5.121 24 O 0.005 5.995 25 H 0.103 0.897 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.005 0.995 29 H 0.022 0.978 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.106 0.894 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.855 4.725 -18.044 18.745 hybrid contribution -0.021 0.163 2.169 2.175 sum 1.834 4.888 -15.876 16.712 Atomic orbital electron populations 1.21732 0.90901 1.02739 1.03256 1.20124 0.98208 0.98232 0.84442 0.86970 1.19027 0.94507 0.95389 0.91164 1.21528 1.35187 1.09014 0.90824 0.90307 1.25948 0.94955 0.95928 1.02808 1.70122 1.39940 1.23019 1.24475 0.85384 0.77921 0.79012 0.78657 1.17706 1.20782 1.21073 1.29566 0.92275 0.81665 0.97374 1.71967 1.18230 1.29620 1.03251 1.26682 0.99516 0.85018 1.00092 1.21195 0.92046 0.99226 0.82648 0.86739 1.22903 0.92991 1.01427 0.99962 1.22738 0.96803 0.97961 0.97661 1.23282 0.90161 0.93092 1.02630 1.64096 1.05824 1.12368 1.41797 1.22696 0.91991 0.98931 0.99532 1.74589 1.13965 1.24831 0.98671 1.85256 1.54806 1.30322 1.29129 0.89679 0.91308 0.92745 0.99488 0.97842 0.92853 0.92390 0.88756 0.88597 0.88775 0.87697 0.93606 0.93480 0.89429 0.94553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 8.99 71.98 0.65 -3.57 16 2 C 0.01 0.40 2.81 -11.54 -0.03 0.37 16 3 H 0.11 4.17 8.14 -2.39 -0.02 4.15 16 4 C 0.04 1.85 4.43 29.85 0.13 1.99 16 5 C -0.53 -27.47 8.41 25.60 0.22 -27.26 16 6 H 0.08 3.77 7.06 -2.91 -0.02 3.75 16 7 C 0.00 0.09 5.46 84.66 0.46 0.55 16 8 N -0.94 -55.37 13.29 21.45 0.28 -55.09 16 9 Si 0.97 42.06 29.54 68.60 2.03 44.08 16 10 H -0.25 -10.23 7.11 99.48 0.71 -9.53 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 13 C 0.21 8.12 7.02 88.38 0.62 8.74 16 14 N -0.50 -18.00 9.02 -303.21 -2.74 -20.74 16 15 C 0.16 5.48 4.74 138.46 0.66 6.14 16 16 C 0.16 4.21 3.95 44.51 0.18 4.39 16 17 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 18 C -0.13 -2.98 6.48 31.87 0.21 -2.77 16 19 C -0.11 -1.81 7.08 32.07 0.23 -1.58 16 20 C 0.04 0.66 6.73 86.77 0.58 1.24 16 21 N -0.52 -12.42 5.44 -890.90 -4.85 -17.27 16 22 C 0.02 0.44 8.27 127.69 1.06 1.50 16 23 N -0.41 -15.52 12.16 -60.33 -0.73 -16.25 16 24 O 0.06 2.31 11.31 74.89 0.85 3.15 16 25 H 0.08 2.80 6.95 -2.39 -0.02 2.79 16 26 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 29 H 0.00 0.17 8.14 -2.38 -0.02 0.16 16 30 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 31 H 0.06 1.58 7.70 -2.39 -0.02 1.56 16 32 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.05 0.94 7.67 -2.39 -0.02 0.92 16 37 H 0.05 1.37 5.89 -2.39 -0.01 1.36 16 38 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.04 1.07 7.11 -2.39 -0.02 1.06 16 Total: -1.00 -62.85 316.69 0.82 -62.03 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 1.03 Total: 10.36 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 4.95 Total: -10.28 kcal Atomic # 7 Polarization: -101.31 SS G_CDS: -8.04 Total: -109.34 kcal Atomic # 8 Polarization: 2.31 SS G_CDS: 0.85 Total: 3.15 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -62.85 0.82 -62.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700212200.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.914 kcal (2) G-P(sol) polarization free energy of solvation -62.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds