Wall clock time and date at job start Mon Mar 30 2020 06:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47877 * 2 1 4 4 C 1.52995 * 109.47148 * 120.00719 * 2 1 3 5 5 C 1.50699 * 109.46951 * 294.99530 * 4 2 1 6 6 H 1.07992 * 120.00146 * 0.02562 * 5 4 2 7 7 C 1.37883 * 120.00182 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00095 * 180.02562 * 7 5 4 9 9 Si 1.86808 * 119.99741 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47068 * 90.00148 * 9 7 5 11 11 H 1.48500 * 109.46756 * 209.99938 * 9 7 5 12 12 H 1.48499 * 109.46945 * 329.99968 * 9 7 5 13 13 C 1.50703 * 109.46858 * 240.00140 * 2 1 3 14 14 N 1.31135 * 126.54943 * 120.30446 * 13 2 1 15 15 C 1.34498 * 105.61549 * 180.12486 * 14 13 2 16 16 C 1.50694 * 126.28760 * 179.90330 * 15 14 13 17 17 H 1.09004 * 110.36987 * 342.35911 * 16 15 14 18 18 C 1.54382 * 110.41203 * 104.71084 * 16 15 14 19 19 C 1.54257 * 105.06052 * 142.63050 * 18 16 15 20 20 C 1.54379 * 105.06256 * 0.02562 * 19 18 16 21 21 N 1.48562 * 104.69842 * 336.08765 * 20 19 18 22 22 C 1.46894 * 111.00344 * 159.09785 * 21 20 19 23 23 N 1.29943 * 107.42199 * 359.63789 * 15 14 13 24 24 O 1.21300 * 110.25618 * 0.22789 * 23 15 14 25 25 H 1.08991 * 109.47394 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46843 * 299.99471 * 1 2 3 27 27 H 1.08998 * 109.46721 * 59.99325 * 1 2 3 28 28 H 1.09000 * 109.47738 * 54.99613 * 4 2 1 29 29 H 1.09006 * 109.47353 * 174.99524 * 4 2 1 30 30 H 0.97007 * 120.00157 * 179.97438 * 8 7 5 31 31 H 1.08997 * 110.32536 * 23.73672 * 18 16 15 32 32 H 1.09004 * 110.32474 * 261.52897 * 18 16 15 33 33 H 1.08998 * 110.32238 * 241.10511 * 19 18 16 34 34 H 1.09002 * 110.32308 * 118.90057 * 19 18 16 35 35 H 1.09002 * 110.41258 * 94.92615 * 20 19 18 36 36 H 1.09002 * 110.41328 * 217.24846 * 20 19 18 37 37 H 1.09007 * 109.47069 * 59.87301 * 22 21 20 38 38 H 1.08995 * 109.47381 * 179.87413 * 22 21 20 39 39 H 1.09000 * 109.47076 * 299.87817 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6414 0.0568 2.4765 6 1 1.0801 0.9739 2.3758 7 6 1.9933 -0.4020 3.7282 8 7 1.6450 0.2769 4.7993 9 14 2.9649 -1.9880 3.9025 10 1 4.4181 -1.6835 3.8782 11 1 2.6176 -2.6422 5.1896 12 1 2.6310 -2.8990 2.7783 13 6 2.0323 -0.7104 -1.2305 14 7 2.7937 -0.2023 -2.1695 15 6 2.9815 -1.1933 -3.0592 16 6 3.7893 -1.1110 -4.3286 17 1 3.9549 -0.0700 -4.6061 18 6 5.1374 -1.8437 -4.1575 19 6 5.4000 -2.5228 -5.5174 20 6 4.1888 -2.1428 -6.3961 21 7 3.1021 -1.8398 -5.4295 22 6 2.0635 -1.0062 -6.0493 23 7 2.3431 -2.2365 -2.6201 24 8 1.7911 -1.9801 -1.5708 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6054 -1.7199 1.2950 29 1 3.1264 -0.7997 1.2054 30 1 1.8923 -0.0461 5.6800 31 1 5.0640 -2.5921 -3.3685 32 1 5.9299 -1.1303 -3.9312 33 1 5.4554 -3.6045 -5.3959 34 1 6.3214 -2.1428 -5.9586 35 1 4.4174 -1.2640 -6.9990 36 1 3.9062 -2.9788 -7.0360 37 1 1.6372 -1.5322 -6.9036 38 1 1.2793 -0.8012 -5.3206 39 1 2.5033 -0.0666 -6.3838 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700212203.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:04 Heat of formation + Delta-G solvation = 62.632626 kcal Electronic energy + Delta-G solvation = -20206.535040 eV Core-core repulsion = 17152.151545 eV Total energy + Delta-G solvation = -3054.383496 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.17430 -39.28867 -35.99845 -35.14322 -32.56691 -32.46094 -31.16525 -29.13107 -27.72076 -25.95526 -24.61268 -23.69523 -22.66537 -21.22476 -21.03199 -19.23440 -17.60879 -17.23871 -16.90597 -16.06030 -15.83447 -14.88955 -14.51054 -14.09824 -14.03831 -13.75589 -13.49936 -12.83179 -12.68889 -12.34183 -12.21657 -12.12960 -12.06657 -11.73683 -11.52641 -11.48730 -11.15439 -11.01862 -10.90798 -10.84640 -10.62455 -10.28737 -10.16104 -9.86015 -9.34467 -9.27963 -8.84292 -8.61149 -6.11863 -4.11756 1.57953 2.51486 3.28303 3.31481 3.36434 3.40645 3.43787 3.97629 4.33817 4.39729 4.41277 4.57721 4.69926 4.94707 5.07709 5.15317 5.21550 5.23864 5.37194 5.42607 5.56322 5.61386 5.65178 5.68090 5.73630 5.81657 5.89356 5.92276 6.18750 6.26911 6.45676 6.50457 6.53349 6.67583 6.82163 7.00796 7.18338 7.63551 8.40463 8.58702 8.90161 9.49169 11.00534 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.032289 B = 0.004404 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.954756 B = 6356.319670 C = 6866.461015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.010 3.990 3 H 0.110 0.890 4 C -0.008 4.008 5 C -0.521 4.521 6 H 0.080 0.920 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.873 3.127 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.264 1.264 13 C 0.210 3.790 14 N -0.499 5.499 15 C 0.169 3.831 16 C 0.157 3.843 17 H 0.083 0.917 18 C -0.115 4.115 19 C -0.122 4.122 20 C 0.034 3.966 21 N -0.504 5.504 22 C 0.016 3.984 23 N -0.368 5.368 24 O 0.074 5.926 25 H 0.057 0.943 26 H 0.090 0.910 27 H 0.042 0.958 28 H 0.029 0.971 29 H 0.017 0.983 30 H 0.265 0.735 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.145 -3.256 -20.690 21.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.011 4.011 3 H 0.128 0.872 4 C -0.046 4.046 5 C -0.558 4.558 6 H 0.098 0.902 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.188 1.188 13 C -0.009 4.009 14 N -0.232 5.232 15 C -0.105 4.105 16 C 0.047 3.953 17 H 0.101 0.899 18 C -0.155 4.155 19 C -0.160 4.160 20 C -0.094 4.094 21 N -0.229 5.229 22 C -0.133 4.133 23 N -0.076 5.076 24 O 0.016 5.984 25 H 0.077 0.923 26 H 0.108 0.892 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 4.098 -4.190 -20.953 21.757 hybrid contribution 0.822 0.021 0.091 0.828 sum 4.921 -4.168 -20.862 21.836 Atomic orbital electron populations 1.21791 0.92624 1.02609 1.02405 1.20101 0.96826 0.98790 0.85362 0.87165 1.19719 0.96313 0.96751 0.91820 1.20924 1.36510 1.09859 0.88540 0.90208 1.24933 0.95346 0.96813 0.95813 1.69886 1.46455 1.39101 0.98126 0.86880 0.80770 0.84458 0.77892 1.20233 1.21153 1.18820 1.29583 0.91698 0.82092 0.97568 1.71897 1.18173 1.29582 1.03564 1.25219 1.00545 0.85799 0.98947 1.20748 0.91048 0.98080 0.85454 0.89939 1.22336 0.94641 0.99861 0.98613 1.22292 0.97482 1.01611 0.94580 1.23121 0.90868 1.00781 0.94621 1.65227 1.10201 1.39837 1.07639 1.22509 0.95569 0.95375 0.99853 1.74630 1.12131 1.23469 0.97365 1.85326 1.54255 1.29967 1.28844 0.92348 0.89167 0.93893 0.95318 0.96480 0.92531 0.90505 0.90225 0.90552 0.90825 0.93432 0.89574 0.90794 0.91470 0.94956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.99 37.16 0.33 -1.99 16 2 C 0.01 0.18 2.81 -91.77 -0.26 -0.07 16 3 H 0.11 2.08 8.14 -51.93 -0.42 1.66 16 4 C -0.01 -0.18 3.50 -27.89 -0.10 -0.27 16 5 C -0.52 -13.79 8.96 -34.44 -0.31 -14.10 16 6 H 0.08 2.22 7.30 -52.49 -0.38 1.83 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 8 N -0.90 -26.56 13.96 55.43 0.77 -25.78 16 9 Si 0.87 21.15 27.47 -169.99 -4.67 16.48 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 13 C 0.21 3.96 7.02 -13.05 -0.09 3.86 16 14 N -0.50 -9.21 11.55 -9.86 -0.11 -9.32 16 15 C 0.17 2.87 6.80 -156.37 -1.06 1.81 16 16 C 0.16 2.08 2.83 -67.07 -0.19 1.89 16 17 H 0.08 1.03 7.91 -51.93 -0.41 0.62 16 18 C -0.12 -1.31 6.54 -25.35 -0.17 -1.48 16 19 C -0.12 -1.06 7.00 -25.35 -0.18 -1.23 16 20 C 0.03 0.30 6.48 -2.18 -0.01 0.29 16 21 N -0.50 -6.12 5.32 -231.49 -1.23 -7.35 16 22 C 0.02 0.17 9.43 60.06 0.57 0.73 16 23 N -0.37 -6.83 12.14 30.90 0.38 -6.45 16 24 O 0.07 1.42 11.31 18.09 0.20 1.63 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.09 1.62 6.95 -51.93 -0.36 1.26 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 29 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.08 1.01 7.85 -51.93 -0.41 0.61 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.36 7.97 -51.93 -0.41 -0.05 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 38 H 0.07 0.83 8.06 -51.93 -0.42 0.41 16 39 H 0.03 0.30 7.98 -51.93 -0.41 -0.11 16 LS Contribution 320.57 15.07 4.83 4.83 Total: -1.00 -30.15 320.57 -7.52 -37.67 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -6.13 Total: -3.08 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -1.56 Total: -8.62 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: -0.20 Total: -48.91 kcal Atomic # 8 Polarization: 1.42 SS G_CDS: 0.20 Total: 1.63 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.15 -7.52 -37.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700212203.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.306 kcal (2) G-P(sol) polarization free energy of solvation -30.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds