Wall clock time and date at job start Mon Mar 30 2020 06:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47877 * 2 1 4 4 C 1.52995 * 109.47148 * 120.00719 * 2 1 3 5 5 C 1.50699 * 109.46951 * 294.99530 * 4 2 1 6 6 H 1.07992 * 120.00146 * 0.02562 * 5 4 2 7 7 C 1.37883 * 120.00182 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00095 * 180.02562 * 7 5 4 9 9 Si 1.86808 * 119.99741 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47068 * 90.00148 * 9 7 5 11 11 H 1.48500 * 109.46756 * 209.99938 * 9 7 5 12 12 H 1.48499 * 109.46945 * 329.99968 * 9 7 5 13 13 C 1.50703 * 109.46858 * 240.00140 * 2 1 3 14 14 N 1.31135 * 126.54943 * 120.30446 * 13 2 1 15 15 C 1.34498 * 105.61549 * 180.12486 * 14 13 2 16 16 C 1.50694 * 126.28760 * 179.90330 * 15 14 13 17 17 H 1.09004 * 110.36987 * 342.35911 * 16 15 14 18 18 C 1.54382 * 110.41203 * 104.71084 * 16 15 14 19 19 C 1.54257 * 105.06052 * 142.63050 * 18 16 15 20 20 C 1.54379 * 105.06256 * 0.02562 * 19 18 16 21 21 N 1.48562 * 104.69842 * 336.08765 * 20 19 18 22 22 C 1.46894 * 111.00344 * 159.09785 * 21 20 19 23 23 N 1.29943 * 107.42199 * 359.63789 * 15 14 13 24 24 O 1.21300 * 110.25618 * 0.22789 * 23 15 14 25 25 H 1.08991 * 109.47394 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46843 * 299.99471 * 1 2 3 27 27 H 1.08998 * 109.46721 * 59.99325 * 1 2 3 28 28 H 1.09000 * 109.47738 * 54.99613 * 4 2 1 29 29 H 1.09006 * 109.47353 * 174.99524 * 4 2 1 30 30 H 0.97007 * 120.00157 * 179.97438 * 8 7 5 31 31 H 1.08997 * 110.32536 * 23.73672 * 18 16 15 32 32 H 1.09004 * 110.32474 * 261.52897 * 18 16 15 33 33 H 1.08998 * 110.32238 * 241.10511 * 19 18 16 34 34 H 1.09002 * 110.32308 * 118.90057 * 19 18 16 35 35 H 1.09002 * 110.41258 * 94.92615 * 20 19 18 36 36 H 1.09002 * 110.41328 * 217.24846 * 20 19 18 37 37 H 1.09007 * 109.47069 * 59.87301 * 22 21 20 38 38 H 1.08995 * 109.47381 * 179.87413 * 22 21 20 39 39 H 1.09000 * 109.47076 * 299.87817 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6414 0.0568 2.4765 6 1 1.0801 0.9739 2.3758 7 6 1.9933 -0.4020 3.7282 8 7 1.6450 0.2769 4.7993 9 14 2.9649 -1.9880 3.9025 10 1 4.4181 -1.6835 3.8782 11 1 2.6176 -2.6422 5.1896 12 1 2.6310 -2.8990 2.7783 13 6 2.0323 -0.7104 -1.2305 14 7 2.7937 -0.2023 -2.1695 15 6 2.9815 -1.1933 -3.0592 16 6 3.7893 -1.1110 -4.3286 17 1 3.9549 -0.0700 -4.6061 18 6 5.1374 -1.8437 -4.1575 19 6 5.4000 -2.5228 -5.5174 20 6 4.1888 -2.1428 -6.3961 21 7 3.1021 -1.8398 -5.4295 22 6 2.0635 -1.0062 -6.0493 23 7 2.3431 -2.2365 -2.6201 24 8 1.7911 -1.9801 -1.5708 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6054 -1.7199 1.2950 29 1 3.1264 -0.7997 1.2054 30 1 1.8923 -0.0461 5.6800 31 1 5.0640 -2.5921 -3.3685 32 1 5.9299 -1.1303 -3.9312 33 1 5.4554 -3.6045 -5.3959 34 1 6.3214 -2.1428 -5.9586 35 1 4.4174 -1.2640 -6.9990 36 1 3.9062 -2.9788 -7.0360 37 1 1.6372 -1.5322 -6.9036 38 1 1.2793 -0.8012 -5.3206 39 1 2.5033 -0.0666 -6.3838 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700212203.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:04 Heat of formation + Delta-G solvation = 41.339818 kcal Electronic energy + Delta-G solvation = -20207.458366 eV Core-core repulsion = 17152.151545 eV Total energy + Delta-G solvation = -3055.306821 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -46.59377 -40.15312 -37.60499 -36.56492 -34.52027 -33.27811 -32.65378 -30.14940 -29.52223 -26.77151 -26.19644 -24.94991 -24.25657 -22.44900 -21.94089 -20.58003 -19.17108 -18.98108 -18.37026 -16.95184 -16.87917 -16.47170 -16.05645 -15.42734 -15.31646 -14.84463 -14.66025 -14.46284 -14.01697 -13.61190 -13.51631 -13.25326 -13.22035 -12.97017 -12.87759 -12.59344 -12.57699 -12.38062 -12.15557 -12.10566 -11.98033 -11.83246 -11.69467 -11.56572 -11.33448 -10.81120 -10.73881 -9.66415 -8.26659 -6.29846 0.13222 1.15293 1.36054 1.39481 1.48964 1.84491 2.35071 2.36721 2.91633 3.08705 3.16338 3.51685 3.68036 3.85106 4.03487 4.10791 4.19313 4.25445 4.34096 4.38222 4.46305 4.51340 4.64903 4.74882 4.79251 4.85116 4.85631 4.94548 4.96819 5.02212 5.03210 5.16238 5.17110 5.31770 5.45415 5.60919 5.64997 5.88461 6.27007 6.76533 7.16387 7.33965 8.88674 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.032289 B = 0.004404 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.954756 B = 6356.319670 C = 6866.461015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.017 3.983 3 H 0.111 0.889 4 C -0.004 4.004 5 C -0.517 4.517 6 H 0.056 0.944 7 C 0.017 3.983 8 N -0.942 5.942 9 Si 0.930 3.070 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.252 1.252 13 C 0.208 3.792 14 N -0.507 5.507 15 C 0.176 3.824 16 C 0.151 3.849 17 H 0.092 0.908 18 C -0.116 4.116 19 C -0.115 4.115 20 C 0.035 3.965 21 N -0.526 5.526 22 C 0.017 3.983 23 N -0.384 5.384 24 O 0.062 5.938 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.030 0.970 29 H 0.014 0.986 30 H 0.267 0.733 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.042 0.958 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.282 -4.069 -23.092 24.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.003 4.003 3 H 0.129 0.871 4 C -0.042 4.042 5 C -0.555 4.555 6 H 0.075 0.925 7 C -0.181 4.181 8 N -0.583 5.583 9 Si 0.755 3.245 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.176 1.176 13 C -0.012 4.012 14 N -0.241 5.241 15 C -0.098 4.098 16 C 0.041 3.959 17 H 0.109 0.891 18 C -0.155 4.155 19 C -0.153 4.153 20 C -0.092 4.092 21 N -0.251 5.251 22 C -0.131 4.131 23 N -0.094 5.094 24 O 0.007 5.993 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.048 0.952 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.061 0.939 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.224 -5.011 -23.364 24.460 hybrid contribution 0.450 0.333 0.762 0.945 sum 5.674 -4.678 -22.602 23.769 Atomic orbital electron populations 1.21732 0.91107 1.03074 1.02929 1.19900 0.98070 0.98259 0.84112 0.87120 1.19597 0.96064 0.96568 0.91969 1.21187 1.35162 1.09173 0.89970 0.92533 1.25726 0.96627 1.00041 0.95662 1.70010 1.48423 1.41121 0.98731 0.85952 0.79446 0.80869 0.78227 1.19703 1.20797 1.17576 1.29388 0.91986 0.82218 0.97631 1.71911 1.18108 1.30181 1.03917 1.25948 0.99514 0.84744 0.99552 1.20993 0.91373 0.99094 0.84439 0.89062 1.22364 0.93984 0.99582 0.99563 1.22306 0.98602 1.01402 0.92947 1.23224 0.89801 1.01962 0.94201 1.65206 1.11461 1.40024 1.08436 1.22502 0.94795 0.96230 0.99568 1.74623 1.13098 1.24182 0.97496 1.85309 1.54727 1.29978 1.29309 0.91923 0.90513 0.91447 0.95183 0.96813 0.92438 0.92898 0.88895 0.90663 0.88225 0.91584 0.88483 0.89097 0.93877 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 8.99 71.98 0.65 -3.70 16 2 C 0.02 0.64 2.81 -11.54 -0.03 0.61 16 3 H 0.11 4.15 8.14 -2.39 -0.02 4.13 16 4 C 0.00 -0.16 3.50 29.85 0.10 -0.06 16 5 C -0.52 -27.68 8.96 25.60 0.23 -27.45 16 6 H 0.06 3.22 7.30 -2.91 -0.02 3.20 16 7 C 0.02 0.97 5.47 84.66 0.46 1.44 16 8 N -0.94 -56.76 13.96 21.45 0.30 -56.46 16 9 Si 0.93 43.40 27.47 68.60 1.88 45.29 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 13 C 0.21 7.66 7.02 88.38 0.62 8.28 16 14 N -0.51 -18.26 11.55 -303.17 -3.50 -21.77 16 15 C 0.18 5.84 6.80 138.46 0.94 6.78 16 16 C 0.15 3.74 2.83 44.26 0.13 3.87 16 17 H 0.09 2.07 7.91 -2.39 -0.02 2.06 16 18 C -0.12 -2.40 6.54 31.49 0.21 -2.19 16 19 C -0.11 -1.64 7.00 31.49 0.22 -1.42 16 20 C 0.03 0.51 6.48 86.45 0.56 1.07 16 21 N -0.53 -11.63 5.32 -886.31 -4.72 -16.35 16 22 C 0.02 0.33 9.43 127.69 1.20 1.54 16 23 N -0.38 -13.98 12.14 -60.31 -0.73 -14.72 16 24 O 0.06 2.32 11.31 74.81 0.85 3.17 16 25 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.08 2.77 6.95 -2.39 -0.02 2.75 16 27 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 28 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 29 H 0.01 0.62 7.57 -2.38 -0.02 0.60 16 30 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 31 H 0.05 1.34 7.85 -2.39 -0.02 1.32 16 32 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 0.74 7.97 -2.39 -0.02 0.72 16 36 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.04 1.02 8.06 -2.39 -0.02 1.00 16 39 H 0.05 0.74 7.98 -2.39 -0.02 0.72 16 Total: -1.00 -64.61 320.57 0.34 -64.27 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 0.97 Total: 7.82 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 5.29 Total: -11.26 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -8.65 Total: -109.29 kcal Atomic # 8 Polarization: 2.32 SS G_CDS: 0.85 Total: 3.17 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.88 Total: 45.29 kcal Total: -64.61 0.34 -64.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700212203.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.614 kcal (2) G-P(sol) polarization free energy of solvation -64.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds