Wall clock time and date at job start Mon Mar 30 2020 08:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 115.55003 * 2 1 4 4 C 1.53001 * 117.49745 * 145.66260 * 2 1 3 5 5 C 1.52999 * 117.50123 * 214.28548 * 2 1 3 6 6 C 1.53007 * 117.49792 * 145.02025 * 5 2 1 7 7 C 1.50703 * 117.49683 * 0.02562 * 5 2 1 8 8 O 1.21280 * 120.00053 * 45.89003 * 7 5 2 9 9 N 1.34777 * 119.99849 * 225.88706 * 7 5 2 10 10 C 1.46921 * 120.63057 * 4.85341 * 9 7 5 11 11 C 1.53195 * 108.77628 * 233.58671 * 10 9 7 12 12 C 1.53042 * 109.31025 * 305.36541 * 11 10 9 13 13 C 1.53042 * 109.53822 * 61.36606 * 12 11 10 14 14 H 1.08998 * 109.50053 * 58.58691 * 13 12 11 15 15 C 1.50700 * 109.49867 * 178.65262 * 13 12 11 16 16 H 1.07991 * 120.00426 * 119.99669 * 15 13 12 17 17 C 1.37874 * 119.99602 * 299.99828 * 15 13 12 18 18 N 1.31511 * 120.00417 * 0.02562 * 17 15 13 19 19 Si 1.86809 * 120.00011 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46756 * 89.99695 * 19 17 15 21 21 H 1.48494 * 109.47239 * 209.99963 * 19 17 15 22 22 H 1.48496 * 109.46867 * 330.00031 * 19 17 15 23 23 C 1.46921 * 120.62896 * 184.57527 * 9 7 5 24 24 H 1.09003 * 109.47258 * 325.72959 * 1 2 3 25 25 H 1.09006 * 109.47008 * 85.72204 * 1 2 3 26 26 H 1.08993 * 109.47363 * 205.72495 * 1 2 3 27 27 H 1.08999 * 109.47122 * 154.27656 * 3 2 1 28 28 H 1.08997 * 109.46989 * 274.27206 * 3 2 1 29 29 H 1.08995 * 109.47409 * 34.27516 * 3 2 1 30 30 H 1.08996 * 117.49996 * 214.97823 * 4 2 1 31 31 H 1.09001 * 117.49775 * 0.02562 * 4 2 1 32 32 H 1.09001 * 109.46499 * 134.48409 * 6 5 2 33 33 H 1.08994 * 109.46891 * 254.48357 * 6 5 2 34 34 H 1.09002 * 109.47145 * 14.48152 * 6 5 2 35 35 H 1.09005 * 109.58816 * 353.36845 * 10 9 7 36 36 H 1.08996 * 109.58880 * 113.65576 * 10 9 7 37 37 H 1.09005 * 109.49907 * 65.31244 * 11 10 9 38 38 H 1.08995 * 109.50129 * 185.38170 * 11 10 9 39 39 H 1.08998 * 109.46057 * 181.38189 * 12 11 10 40 40 H 1.08996 * 109.45995 * 301.35747 * 12 11 10 41 41 H 0.97009 * 120.00113 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.58475 * 246.20459 * 23 9 7 43 43 H 1.09005 * 109.58815 * 6.62408 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2364 -1.1207 0.7655 5 6 2.2365 -1.1213 -0.7645 6 6 3.5491 -0.7765 -1.4711 7 6 1.3720 -2.1409 -1.4604 8 8 0.4257 -1.7797 -2.1273 9 7 1.6507 -3.4542 -1.3416 10 6 2.7272 -3.9137 -0.4536 11 6 3.6834 -4.8015 -1.2563 12 6 2.8901 -5.9303 -1.9186 13 6 1.8601 -5.3353 -2.8817 14 1 2.3703 -4.7334 -3.6336 15 6 1.1020 -6.4484 -3.5580 16 1 0.0306 -6.5197 -3.4430 17 6 1.7764 -7.3759 -4.3235 18 7 3.0813 -7.2895 -4.4631 19 14 0.8369 -8.7561 -5.1613 20 1 0.4124 -8.3157 -6.5144 21 1 1.7126 -9.9494 -5.2811 22 1 -0.3612 -9.1003 -4.3542 23 6 0.8797 -4.4539 -2.0930 24 1 -0.3634 0.8493 0.5787 25 1 -0.3633 0.0767 -1.0249 26 1 -0.3634 -0.9257 0.4460 27 1 3.1819 1.3089 0.4460 28 1 2.2775 1.7412 -1.0248 29 1 1.5805 2.0745 0.5787 30 1 3.1715 -0.8746 1.2687 31 1 1.6111 -1.8581 1.2688 32 1 4.2868 -1.5521 -1.2656 33 1 3.3776 -0.7135 -2.5456 34 1 3.9178 0.1819 -1.1053 35 1 3.2698 -3.0534 -0.0616 36 1 2.3016 -4.4843 0.3718 37 1 4.1764 -4.2046 -2.0237 38 1 4.4327 -5.2262 -0.5884 39 1 3.5715 -6.5778 -2.4705 40 1 2.3772 -6.5117 -1.1525 41 1 3.5557 -7.9418 -5.0020 42 1 0.3066 -5.0698 -1.4000 43 1 0.2027 -3.9502 -2.7831 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702153129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:30 Heat of formation + Delta-G solvation = -29.683642 kcal Electronic energy + Delta-G solvation = -21400.731924 eV Core-core repulsion = 18445.885638 eV Total energy + Delta-G solvation = -2954.846286 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.38359 -37.86946 -36.42465 -33.45868 -31.36865 -30.75620 -29.84326 -28.19295 -26.89895 -25.14102 -24.89386 -22.06502 -21.68949 -20.22100 -18.87842 -17.58822 -16.49948 -15.95295 -15.44477 -15.11811 -14.61130 -14.01969 -13.91973 -13.73748 -13.52584 -13.22346 -12.77398 -12.72719 -12.52063 -12.22851 -12.16532 -11.97255 -11.89586 -11.86838 -11.66312 -11.15355 -10.98317 -10.83246 -10.72798 -10.31822 -10.08388 -9.89899 -9.77852 -9.55230 -9.43349 -9.02645 -8.78380 -8.37866 -7.84394 -6.01625 -4.08747 3.06975 3.30181 3.36557 3.38699 3.42978 3.73269 4.42782 4.56429 4.68174 4.70574 5.04201 5.08455 5.27856 5.45353 5.48864 5.62262 5.64972 5.68821 5.71652 5.79657 5.81615 5.86041 5.90993 5.94875 6.01454 6.14286 6.16823 6.26322 6.35473 6.41939 6.46771 6.50824 6.68241 6.83581 7.01251 7.19733 7.35229 7.69514 7.93042 8.07128 8.08478 8.38461 8.72443 8.95067 9.56149 11.03761 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.035589 B = 0.004929 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.575761 B = 5679.854123 C = 6020.644453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.096 4.096 3 C -0.113 4.113 4 C -0.162 4.162 5 C -0.144 4.144 6 C -0.110 4.110 7 C 0.546 3.454 8 O -0.546 6.546 9 N -0.598 5.598 10 C 0.109 3.891 11 C -0.135 4.135 12 C -0.112 4.112 13 C 0.041 3.959 14 H 0.029 0.971 15 C -0.514 4.514 16 H 0.057 0.943 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.117 3.883 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.095 0.905 40 H 0.035 0.965 41 H 0.260 0.740 42 H 0.053 0.947 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.336 12.215 11.204 16.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.097 4.097 3 C -0.170 4.170 4 C -0.199 4.199 5 C -0.147 4.147 6 C -0.168 4.168 7 C 0.333 3.667 8 O -0.424 6.424 9 N -0.329 5.329 10 C -0.014 4.014 11 C -0.173 4.173 12 C -0.150 4.150 13 C 0.022 3.978 14 H 0.047 0.953 15 C -0.553 4.553 16 H 0.075 0.925 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.004 4.004 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.976 12.287 10.758 16.450 hybrid contribution -0.294 -1.015 -0.447 1.148 sum 1.682 11.271 10.312 15.369 Atomic orbital electron populations 1.21399 0.91541 1.01099 1.03260 1.21624 0.95348 0.90887 1.01792 1.21362 0.99726 0.93820 1.02103 1.23437 1.02672 1.01437 0.92342 1.21534 0.98973 1.00071 0.94172 1.21292 0.93250 1.01630 1.00590 1.19439 0.84089 0.82380 0.80810 1.90625 1.29990 1.79952 1.41874 1.48246 1.34704 1.05699 1.44282 1.21785 0.88855 0.98437 0.92331 1.22005 0.97569 0.98716 0.98984 1.21625 0.99397 0.96344 0.97647 1.19040 0.92394 0.93505 0.92833 0.95311 1.21086 0.93833 1.10669 1.29682 0.92513 1.24929 0.94862 0.97795 0.96181 1.69874 1.06839 1.36295 1.39788 0.86584 0.79792 0.81599 0.79979 1.20663 1.21250 1.19885 1.22084 0.94961 0.88886 0.94471 0.92689 0.90481 0.92912 0.92316 0.91881 0.92009 0.88133 0.88569 0.91598 0.91730 0.91441 0.90546 0.92328 0.92427 0.92609 0.88668 0.94657 0.92997 0.92832 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 8.53 37.16 0.32 -1.21 16 2 C -0.10 -1.17 2.70 -154.51 -0.42 -1.59 16 3 C -0.11 -1.08 8.38 37.16 0.31 -0.77 16 4 C -0.16 -1.85 7.47 -26.73 -0.20 -2.05 16 5 C -0.14 -2.03 1.34 -155.65 -0.21 -2.24 16 6 C -0.11 -1.38 9.50 37.16 0.35 -1.03 16 7 C 0.55 10.16 6.42 -10.98 -0.07 10.09 16 8 O -0.55 -11.96 14.46 5.56 0.08 -11.88 16 9 N -0.60 -11.34 2.97 -172.51 -0.51 -11.85 16 10 C 0.11 1.74 6.04 -3.71 -0.02 1.72 16 11 C -0.13 -2.41 6.08 -26.61 -0.16 -2.58 16 12 C -0.11 -2.53 4.96 -26.69 -0.13 -2.66 16 13 C 0.04 1.03 2.26 -91.43 -0.21 0.82 16 14 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 15 C -0.51 -14.02 8.57 -34.44 -0.30 -14.31 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 18 N -0.89 -25.01 11.31 55.43 0.63 -24.38 16 19 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.12 2.58 5.67 -3.49 -0.02 2.56 16 24 H 0.05 0.59 7.92 -51.93 -0.41 0.18 16 25 H 0.08 1.19 6.94 -51.93 -0.36 0.83 16 26 H 0.05 0.73 7.90 -51.93 -0.41 0.32 16 27 H 0.06 0.48 7.32 -51.93 -0.38 0.10 16 28 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.06 0.52 7.92 -51.93 -0.41 0.11 16 30 H 0.10 0.93 8.05 -51.93 -0.42 0.51 16 31 H 0.10 1.14 8.05 -51.93 -0.42 0.72 16 32 H 0.07 0.79 7.51 -51.93 -0.39 0.40 16 33 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 34 H 0.07 0.68 6.09 -51.93 -0.32 0.36 16 35 H 0.08 1.03 4.54 -51.93 -0.24 0.79 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.10 2.43 6.04 -51.93 -0.31 2.12 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.08 1.84 7.03 -51.93 -0.37 1.47 16 LS Contribution 329.24 15.07 4.96 4.96 Total: -1.00 -29.73 329.24 -8.06 -37.79 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -7.35 Total: 0.79 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -0.85 Total: -11.59 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.12 Total: -36.23 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.08 Total: -11.88 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.73 -8.06 -37.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702153129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.105 kcal (2) G-P(sol) polarization free energy of solvation -29.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds