Wall clock time and date at job start Mon Mar 30 2020 08:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 115.55003 * 2 1 4 4 C 1.53001 * 117.49745 * 145.66260 * 2 1 3 5 5 C 1.52999 * 117.50123 * 214.28548 * 2 1 3 6 6 C 1.53007 * 117.49792 * 145.02025 * 5 2 1 7 7 C 1.50703 * 117.49683 * 0.02562 * 5 2 1 8 8 O 1.21280 * 120.00053 * 45.89003 * 7 5 2 9 9 N 1.34777 * 119.99849 * 225.88706 * 7 5 2 10 10 C 1.46921 * 120.63057 * 4.85341 * 9 7 5 11 11 C 1.53195 * 108.77628 * 233.58671 * 10 9 7 12 12 C 1.53042 * 109.31025 * 305.36541 * 11 10 9 13 13 C 1.53042 * 109.53822 * 61.36606 * 12 11 10 14 14 H 1.08998 * 109.50053 * 58.58691 * 13 12 11 15 15 C 1.50700 * 109.49867 * 178.65262 * 13 12 11 16 16 H 1.07991 * 120.00426 * 119.99669 * 15 13 12 17 17 C 1.37874 * 119.99602 * 299.99828 * 15 13 12 18 18 N 1.31511 * 120.00417 * 0.02562 * 17 15 13 19 19 Si 1.86809 * 120.00011 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46756 * 89.99695 * 19 17 15 21 21 H 1.48494 * 109.47239 * 209.99963 * 19 17 15 22 22 H 1.48496 * 109.46867 * 330.00031 * 19 17 15 23 23 C 1.46921 * 120.62896 * 184.57527 * 9 7 5 24 24 H 1.09003 * 109.47258 * 325.72959 * 1 2 3 25 25 H 1.09006 * 109.47008 * 85.72204 * 1 2 3 26 26 H 1.08993 * 109.47363 * 205.72495 * 1 2 3 27 27 H 1.08999 * 109.47122 * 154.27656 * 3 2 1 28 28 H 1.08997 * 109.46989 * 274.27206 * 3 2 1 29 29 H 1.08995 * 109.47409 * 34.27516 * 3 2 1 30 30 H 1.08996 * 117.49996 * 214.97823 * 4 2 1 31 31 H 1.09001 * 117.49775 * 0.02562 * 4 2 1 32 32 H 1.09001 * 109.46499 * 134.48409 * 6 5 2 33 33 H 1.08994 * 109.46891 * 254.48357 * 6 5 2 34 34 H 1.09002 * 109.47145 * 14.48152 * 6 5 2 35 35 H 1.09005 * 109.58816 * 353.36845 * 10 9 7 36 36 H 1.08996 * 109.58880 * 113.65576 * 10 9 7 37 37 H 1.09005 * 109.49907 * 65.31244 * 11 10 9 38 38 H 1.08995 * 109.50129 * 185.38170 * 11 10 9 39 39 H 1.08998 * 109.46057 * 181.38189 * 12 11 10 40 40 H 1.08996 * 109.45995 * 301.35747 * 12 11 10 41 41 H 0.97009 * 120.00113 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.58475 * 246.20459 * 23 9 7 43 43 H 1.09005 * 109.58815 * 6.62408 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2364 -1.1207 0.7655 5 6 2.2365 -1.1213 -0.7645 6 6 3.5491 -0.7765 -1.4711 7 6 1.3720 -2.1409 -1.4604 8 8 0.4257 -1.7797 -2.1273 9 7 1.6507 -3.4542 -1.3416 10 6 2.7272 -3.9137 -0.4536 11 6 3.6834 -4.8015 -1.2563 12 6 2.8901 -5.9303 -1.9186 13 6 1.8601 -5.3353 -2.8817 14 1 2.3703 -4.7334 -3.6336 15 6 1.1020 -6.4484 -3.5580 16 1 0.0306 -6.5197 -3.4430 17 6 1.7764 -7.3759 -4.3235 18 7 3.0813 -7.2895 -4.4631 19 14 0.8369 -8.7561 -5.1613 20 1 0.4124 -8.3157 -6.5144 21 1 1.7126 -9.9494 -5.2811 22 1 -0.3612 -9.1003 -4.3542 23 6 0.8797 -4.4539 -2.0930 24 1 -0.3634 0.8493 0.5787 25 1 -0.3633 0.0767 -1.0249 26 1 -0.3634 -0.9257 0.4460 27 1 3.1819 1.3089 0.4460 28 1 2.2775 1.7412 -1.0248 29 1 1.5805 2.0745 0.5787 30 1 3.1715 -0.8746 1.2687 31 1 1.6111 -1.8581 1.2688 32 1 4.2868 -1.5521 -1.2656 33 1 3.3776 -0.7135 -2.5456 34 1 3.9178 0.1819 -1.1053 35 1 3.2698 -3.0534 -0.0616 36 1 2.3016 -4.4843 0.3718 37 1 4.1764 -4.2046 -2.0237 38 1 4.4327 -5.2262 -0.5884 39 1 3.5715 -6.5778 -2.4705 40 1 2.3772 -6.5117 -1.1525 41 1 3.5557 -7.9418 -5.0020 42 1 0.3066 -5.0698 -1.4000 43 1 0.2027 -3.9502 -2.7831 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702153129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:30 Heat of formation + Delta-G solvation = -46.161098 kcal Electronic energy + Delta-G solvation = -21401.446440 eV Core-core repulsion = 18445.885638 eV Total energy + Delta-G solvation = -2955.560802 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.68270 -39.21659 -37.97417 -35.35742 -33.07824 -32.18875 -31.24936 -29.03040 -27.88438 -27.09704 -26.42735 -23.48993 -23.28928 -21.51900 -20.39893 -18.99766 -18.33879 -17.48775 -16.82420 -16.58999 -16.29052 -15.36907 -15.19870 -14.99209 -14.78689 -14.63455 -14.54242 -14.01092 -13.92210 -13.63714 -13.35784 -13.17655 -13.13579 -12.89713 -12.81566 -12.75297 -12.58032 -12.52419 -12.04858 -11.96199 -11.86504 -11.61213 -11.26996 -11.12939 -10.84438 -10.55270 -10.45863 -10.26624 -9.47683 -8.12218 -6.27750 1.39581 1.40584 1.50684 1.64475 2.08033 2.42190 2.65307 3.14094 3.48874 3.61400 3.78484 3.99790 4.12980 4.18072 4.25565 4.35577 4.51100 4.56593 4.60906 4.74978 4.78267 4.81911 4.84810 4.85466 4.89779 4.93436 4.97892 5.03171 5.08039 5.09612 5.12124 5.24319 5.29884 5.35637 5.47408 5.50021 5.57844 5.59682 5.91216 6.11600 6.32893 6.59434 6.81309 7.25341 7.40446 8.91396 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.035589 B = 0.004929 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.575761 B = 5679.854123 C = 6020.644453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.098 4.098 3 C -0.110 4.110 4 C -0.136 4.136 5 C -0.166 4.166 6 C -0.106 4.106 7 C 0.537 3.463 8 O -0.591 6.591 9 N -0.603 5.603 10 C 0.112 3.888 11 C -0.126 4.126 12 C -0.105 4.105 13 C 0.044 3.956 14 H -0.015 1.015 15 C -0.540 4.540 16 H 0.050 0.950 17 C 0.019 3.981 18 N -0.912 5.912 19 Si 0.955 3.045 20 H -0.280 1.280 21 H -0.278 1.278 22 H -0.268 1.268 23 C 0.130 3.870 24 H 0.080 0.920 25 H 0.044 0.956 26 H 0.037 0.963 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.137 0.863 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.037 0.963 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.036 0.964 41 H 0.262 0.738 42 H 0.058 0.942 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.614 13.146 13.791 19.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.098 4.098 3 C -0.167 4.167 4 C -0.173 4.173 5 C -0.169 4.169 6 C -0.163 4.163 7 C 0.327 3.673 8 O -0.472 6.472 9 N -0.334 5.334 10 C -0.010 4.010 11 C -0.164 4.164 12 C -0.143 4.143 13 C 0.025 3.975 14 H 0.003 0.997 15 C -0.579 4.579 16 H 0.069 0.931 17 C -0.181 4.181 18 N -0.551 5.551 19 Si 0.781 3.219 20 H -0.206 1.206 21 H -0.204 1.204 22 H -0.192 1.192 23 C 0.007 3.993 24 H 0.099 0.901 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.155 0.845 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.117 0.883 35 H 0.130 0.870 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.273 13.224 13.368 19.086 hybrid contribution -0.744 -1.288 -1.294 1.972 sum 2.529 11.935 12.073 17.164 Atomic orbital electron populations 1.21363 0.92916 1.01466 1.01498 1.21816 0.94599 0.92369 1.01033 1.21398 1.00954 0.92069 1.02293 1.23594 1.03798 1.00173 0.89756 1.21489 0.99278 1.00133 0.96004 1.21305 0.92497 1.03579 0.98894 1.20378 0.83972 0.82757 0.80213 1.90597 1.32172 1.80613 1.43788 1.48334 1.35164 1.05541 1.44364 1.21990 0.87765 0.99618 0.91629 1.21911 0.98018 0.97236 0.99259 1.21419 0.98485 0.97466 0.96951 1.18930 0.93113 0.92822 0.92681 0.99672 1.21434 0.93872 1.11822 1.30749 0.93137 1.25676 0.95728 0.99982 0.96681 1.70005 1.08012 1.37001 1.40106 0.85603 0.78758 0.78829 0.78754 1.20563 1.20357 1.19229 1.21627 0.94290 0.89132 0.94217 0.90102 0.93694 0.94367 0.89997 0.92515 0.90581 0.84505 0.88816 0.90829 0.94409 0.88290 0.86976 0.90533 0.93652 0.89178 0.91824 0.94525 0.92875 0.92357 0.93279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 8.53 71.98 0.61 -2.33 16 2 C -0.10 -2.13 2.70 -52.18 -0.14 -2.27 16 3 C -0.11 -1.68 8.38 71.98 0.60 -1.08 16 4 C -0.14 -2.54 7.47 30.59 0.23 -2.31 16 5 C -0.17 -4.35 1.34 -52.92 -0.07 -4.42 16 6 C -0.11 -2.39 9.50 71.98 0.68 -1.71 16 7 C 0.54 20.22 6.42 87.66 0.56 20.78 16 8 O -0.59 -27.19 14.46 -3.03 -0.04 -27.23 16 9 N -0.60 -22.95 2.97 -818.08 -2.43 -25.38 16 10 C 0.11 3.30 6.04 86.36 0.52 3.82 16 11 C -0.13 -4.34 6.08 30.67 0.19 -4.16 16 12 C -0.10 -4.80 4.96 30.62 0.15 -4.65 16 13 C 0.04 2.27 2.26 -11.32 -0.03 2.24 16 14 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 15 C -0.54 -30.63 8.57 25.60 0.22 -30.41 16 16 H 0.05 2.84 7.74 -2.92 -0.02 2.82 16 17 C 0.02 1.04 5.30 84.65 0.45 1.49 16 18 N -0.91 -52.68 11.31 21.45 0.24 -52.44 16 19 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 23 C 0.13 5.99 5.67 86.51 0.49 6.48 16 24 H 0.08 1.58 7.92 -2.39 -0.02 1.56 16 25 H 0.04 1.43 6.94 -2.38 -0.02 1.41 16 26 H 0.04 1.05 7.90 -2.39 -0.02 1.03 16 27 H 0.08 0.89 7.32 -2.39 -0.02 0.87 16 28 H 0.06 0.95 8.09 -2.39 -0.02 0.93 16 29 H 0.08 0.96 7.92 -2.39 -0.02 0.95 16 30 H 0.14 1.63 8.05 -2.39 -0.02 1.61 16 31 H 0.09 1.85 8.05 -2.39 -0.02 1.83 16 32 H 0.07 1.52 7.51 -2.39 -0.02 1.50 16 33 H 0.04 1.04 8.13 -2.39 -0.02 1.02 16 34 H 0.10 1.59 6.09 -2.39 -0.01 1.58 16 35 H 0.11 2.55 4.54 -2.38 -0.01 2.54 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.06 3.33 6.04 -2.39 -0.01 3.31 16 40 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 42 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 43 H 0.05 2.50 7.03 -2.38 -0.02 2.48 16 Total: -1.00 -69.30 329.24 5.24 -64.06 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.97 Total: 13.32 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 4.47 Total: -18.51 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -2.18 Total: -77.82 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.04 Total: -27.23 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -69.30 5.24 -64.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702153129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.898 kcal (2) G-P(sol) polarization free energy of solvation -69.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds